Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.03044 * 2 1 4 4 C 1.38104 * 119.93769 * 180.02562 * 3 2 1 5 5 C 1.38499 * 120.20927 * 0.02562 * 4 3 2 6 6 C 1.38217 * 119.85295 * 359.97438 * 5 4 3 7 7 C 1.38099 * 120.03426 * 180.02562 * 2 1 3 8 8 C 1.51371 * 109.75629 * 180.02562 * 6 5 4 9 9 C 1.54351 * 105.25729 * 342.76314 * 8 6 5 10 10 C 1.51367 * 130.38496 * 179.97438 * 5 4 3 11 11 H 1.08999 * 110.30520 * 316.10813 * 10 5 4 12 12 N 1.46899 * 110.30700 * 78.16293 * 10 5 4 13 13 C 1.46900 * 111.00166 * 273.54411 * 12 10 5 14 14 C 1.53000 * 109.47048 * 175.68536 * 13 12 10 15 15 C 1.50701 * 115.55070 * 65.18507 * 14 13 12 16 16 H 1.07995 * 119.99873 * 265.17898 * 15 14 13 17 17 C 1.37881 * 119.99778 * 85.17575 * 15 14 13 18 18 N 1.31517 * 119.99793 * 353.29115 * 17 15 14 19 19 Si 1.86799 * 119.99921 * 173.28708 * 17 15 14 20 20 H 1.48504 * 109.46888 * 90.00327 * 19 17 15 21 21 H 1.48497 * 109.46935 * 210.00212 * 19 17 15 22 22 H 1.48496 * 109.46985 * 330.00054 * 19 17 15 23 23 C 1.52999 * 117.49955 * 279.51477 * 14 13 12 24 24 C 1.52998 * 117.49750 * 210.85819 * 14 13 12 25 25 H 1.08998 * 109.47567 * 269.98061 * 1 2 3 26 26 H 1.08998 * 109.47517 * 29.98880 * 1 2 3 27 27 H 1.09006 * 109.46708 * 149.98192 * 1 2 3 28 28 H 1.08007 * 120.03300 * 0.03741 * 3 2 1 29 29 H 1.07993 * 119.89276 * 180.02562 * 4 3 2 30 30 H 1.07993 * 119.89345 * 359.97438 * 7 2 1 31 31 H 1.09003 * 110.29943 * 101.73338 * 8 6 5 32 32 H 1.08995 * 110.29942 * 223.78934 * 8 6 5 33 33 H 1.08993 * 110.82163 * 144.62265 * 9 8 6 34 34 H 1.09003 * 110.81474 * 268.17020 * 9 8 6 35 35 H 1.00902 * 110.99903 * 149.58816 * 12 10 5 36 36 H 1.09002 * 109.47213 * 295.68684 * 13 12 10 37 37 H 1.08999 * 109.46848 * 55.68373 * 13 12 10 38 38 H 0.97006 * 119.99543 * 185.05291 * 18 17 15 39 39 H 1.09003 * 117.49644 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.50148 * 145.02045 * 23 14 13 41 41 H 1.09000 * 117.50206 * 214.98267 * 24 14 13 42 42 H 1.09002 * 117.50062 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1969 0.0000 4 6 3.5799 1.1947 -0.0005 5 6 4.2748 -0.0033 -0.0016 6 6 3.5831 -1.2000 -0.0016 7 6 2.1982 -1.1956 -0.0005 8 6 4.5604 -2.3559 -0.0022 9 6 5.9086 -1.7477 -0.4439 10 6 5.7643 -0.2732 -0.0029 11 1 6.2672 0.3846 -0.7117 12 7 6.3173 -0.0866 1.3452 13 6 6.6770 1.3188 1.5768 14 6 7.1470 1.4933 3.0223 15 6 8.4200 0.7721 3.3834 16 1 8.3759 -0.2068 3.8376 17 6 9.6411 1.3619 3.1340 18 7 9.7008 2.4916 2.4632 19 14 11.2104 0.5566 3.7488 20 1 11.7278 -0.3737 2.7134 21 1 12.2272 1.6024 4.0272 22 1 10.9237 -0.1991 4.9946 23 6 6.0726 1.6149 4.1047 24 6 6.8860 2.8441 3.6918 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3634 0.8900 -0.5136 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6599 2.1329 0.0006 29 1 4.1196 2.1301 -0.0001 30 1 1.6570 -2.1301 -0.0005 31 1 4.6462 -2.7791 0.9986 32 1 4.2407 -3.1209 -0.7097 33 1 6.7386 -2.2291 0.0730 34 1 6.0301 -1.8190 -1.5248 35 1 7.1095 -0.6925 1.4981 36 1 7.4792 1.6054 0.8967 37 1 5.8068 1.9506 1.3988 38 1 10.5620 2.8687 2.2241 39 1 5.0309 1.5702 3.7871 40 1 6.2866 1.1737 5.0782 41 1 7.6349 3.2110 4.3937 42 1 6.3799 3.6085 3.1023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797587280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = 24.985673 kcal Electronic energy + Delta-G solvation = -20680.219017 eV Core-core repulsion = 17817.284760 eV Total energy + Delta-G solvation = -2862.934257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13946 -38.74435 -37.37976 -34.35190 -33.91951 -32.74981 -30.65427 -28.36113 -27.55639 -26.80980 -24.96901 -23.30298 -22.86797 -21.56283 -20.92775 -20.78171 -17.96161 -17.00584 -16.63814 -16.57949 -16.33820 -15.90469 -15.62875 -15.56079 -14.63867 -14.47604 -14.28388 -14.11624 -13.94176 -13.40080 -13.19870 -13.00838 -12.89850 -12.83395 -12.82065 -12.45260 -12.32050 -12.10353 -12.06161 -11.90923 -11.82307 -11.58272 -11.25171 -10.72351 -10.40518 -9.96763 -9.60402 -9.28923 -9.07405 -8.07984 -6.19711 0.49584 0.54538 1.40846 1.44267 1.53302 2.43339 2.82394 3.19881 3.34649 3.53893 3.69592 3.82058 4.05773 4.13606 4.15657 4.26309 4.34830 4.45742 4.59072 4.63573 4.66703 4.73075 4.76016 4.85036 4.88948 4.90661 5.00786 5.01599 5.04017 5.06917 5.10529 5.22418 5.25252 5.36135 5.38251 5.58542 5.63409 5.67036 5.73867 5.79854 5.86590 6.19877 6.35005 6.48025 6.67942 6.89391 7.48529 8.99501 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.004810 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.365978 B = 5819.815096 C = 6434.799580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.098 4.098 6 C -0.092 4.092 7 C -0.120 4.120 8 C -0.068 4.068 9 C -0.115 4.115 10 C 0.115 3.885 11 H 0.028 0.972 12 N -0.664 5.664 13 C 0.127 3.873 14 C 0.030 3.970 15 C -0.502 4.502 16 H 0.054 0.946 17 C 0.026 3.974 18 N -0.909 5.909 19 Si 0.949 3.051 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.270 1.270 23 C -0.178 4.178 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.344 0.656 36 H 0.001 0.999 37 H 0.038 0.962 38 H 0.258 0.742 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.661 -7.752 -7.611 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.099 4.099 6 C -0.092 4.092 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.153 4.153 10 C 0.005 3.995 11 H 0.046 0.954 12 N -0.296 5.296 13 C -0.003 4.003 14 C 0.029 3.971 15 C -0.540 4.540 16 H 0.072 0.928 17 C -0.174 4.174 18 N -0.547 5.547 19 Si 0.775 3.225 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.195 1.195 23 C -0.215 4.215 24 C -0.205 4.205 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.158 0.842 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.164 0.836 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.129 -7.532 -7.327 18.420 hybrid contribution 2.152 0.539 -0.087 2.220 sum -12.977 -6.993 -7.415 16.501 Atomic orbital electron populations 1.20787 0.88852 1.03734 1.02963 1.20134 0.97560 0.92441 0.99197 1.21105 0.93109 0.98805 1.02107 1.20772 0.94908 0.96979 1.00880 1.20566 0.95294 0.93962 1.00101 1.20831 0.94169 0.95665 0.98578 1.20747 0.92350 0.98618 1.02039 1.20963 0.91721 0.95321 1.02504 1.22509 0.98431 0.92559 1.01789 1.21079 0.91285 0.97406 0.89742 0.95420 1.60382 1.37372 1.06669 1.25205 1.21135 0.94698 0.88514 0.95923 1.18900 0.93286 0.95467 0.89430 1.20661 0.89940 1.02680 1.40731 0.92787 1.25667 1.01627 0.95050 0.95041 1.70115 1.25327 1.20143 1.39134 0.85697 0.79667 0.78064 0.79075 1.19920 1.21465 1.19477 1.22786 0.95707 1.02846 1.00187 1.22438 1.01923 0.91723 1.04447 0.90645 0.90699 0.90245 0.84630 0.87873 0.84197 0.90192 0.88683 0.89806 0.89314 0.83597 0.98039 0.94317 0.93275 0.90467 0.90901 0.92349 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.23 0.71 -0.96 16 2 C -0.09 -2.19 5.88 -19.89 -0.12 -2.30 16 3 C -0.13 -3.55 9.70 22.24 0.22 -3.34 16 4 C -0.12 -3.75 9.54 22.30 0.21 -3.54 16 5 C -0.10 -3.22 5.63 -19.59 -0.11 -3.33 16 6 C -0.09 -2.58 6.14 -19.59 -0.12 -2.70 16 7 C -0.12 -2.91 9.70 22.30 0.22 -2.69 16 8 C -0.07 -1.63 6.76 30.52 0.21 -1.42 16 9 C -0.12 -3.00 6.76 31.59 0.21 -2.79 16 10 C 0.11 3.89 3.19 44.92 0.14 4.03 16 11 H 0.03 1.02 7.90 -2.39 -0.02 1.00 16 12 N -0.66 -26.65 6.31 -491.54 -3.10 -29.75 16 13 C 0.13 5.88 5.35 86.30 0.46 6.35 16 14 C 0.03 1.50 1.56 -52.93 -0.08 1.42 16 15 C -0.50 -27.13 8.31 25.60 0.21 -26.91 16 16 H 0.05 2.92 7.82 -2.91 -0.02 2.89 16 17 C 0.03 1.43 5.39 84.66 0.46 1.88 16 18 N -0.91 -52.00 12.93 21.45 0.28 -51.73 16 19 Si 0.95 43.05 29.55 68.60 2.03 45.08 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C -0.18 -8.17 9.96 30.62 0.30 -7.86 16 24 C -0.17 -8.24 9.44 30.62 0.29 -7.95 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.01 8.09 -2.39 -0.02 1.00 16 27 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 28 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.10 3.42 7.45 -2.91 -0.02 3.40 16 30 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 2.13 7.59 -2.39 -0.02 2.11 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.34 14.17 7.65 -89.69 -0.69 13.48 16 36 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.04 1.76 6.85 -2.39 -0.02 1.74 16 38 H 0.26 14.17 8.32 -92.70 -0.77 13.40 16 39 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -61.16 342.56 2.72 -58.44 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.31 Total: 30.08 kcal Atomic # 6 Polarization: -55.34 SS G_CDS: 3.22 Total: -52.12 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.82 Total: -81.48 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -61.16 2.72 -58.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.424 kcal (2) G-P(sol) polarization free energy of solvation -61.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds