Wall clock time and date at job start Mon Mar 30 2020 01:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38252 * 120.03984 * 2 1 4 4 C 1.38698 * 120.00596 * 180.02562 * 3 2 1 5 5 C 1.38498 * 120.05076 * 359.93690 * 4 3 2 6 6 C 1.38458 * 119.81552 * 0.07740 * 5 4 3 7 7 C 1.38109 * 120.02945 * 180.02562 * 2 1 3 8 8 C 1.51367 * 109.62995 * 179.97438 * 6 5 4 9 9 C 1.54351 * 105.25421 * 17.23938 * 8 6 5 10 10 C 1.51369 * 130.39293 * 180.11618 * 5 4 3 11 11 H 1.09007 * 110.29981 * 43.87953 * 10 5 4 12 12 N 1.46894 * 110.30546 * 281.72767 * 10 5 4 13 13 C 1.46898 * 111.00075 * 89.24970 * 12 10 5 14 14 C 1.53004 * 109.47107 * 174.67432 * 13 12 10 15 15 C 1.50698 * 115.55020 * 65.17030 * 14 13 12 16 16 H 1.07998 * 120.00001 * 264.84027 * 15 14 13 17 17 C 1.37873 * 120.00227 * 84.84339 * 15 14 13 18 18 N 1.31513 * 119.99797 * 352.94534 * 17 15 14 19 19 Si 1.86796 * 120.00269 * 172.95162 * 17 15 14 20 20 H 1.48497 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47643 * 119.99771 * 19 17 15 22 22 H 1.48504 * 109.47228 * 239.99879 * 19 17 15 23 23 C 1.53005 * 117.49721 * 279.49892 * 14 13 12 24 24 C 1.52997 * 117.49997 * 210.84180 * 14 13 12 25 25 H 1.09003 * 109.47225 * 269.98007 * 1 2 3 26 26 H 1.09007 * 109.46824 * 29.97339 * 1 2 3 27 27 H 1.09000 * 109.47820 * 149.97518 * 1 2 3 28 28 H 1.08001 * 120.02837 * 0.03464 * 3 2 1 29 29 H 1.08001 * 120.05374 * 180.02562 * 4 3 2 30 30 H 1.08003 * 119.89384 * 359.94781 * 7 2 1 31 31 H 1.08993 * 110.30217 * 258.26251 * 8 6 5 32 32 H 1.09000 * 110.30028 * 136.20636 * 8 6 5 33 33 H 1.08998 * 110.82162 * 91.82157 * 9 8 6 34 34 H 1.08997 * 110.81773 * 215.37698 * 9 8 6 35 35 H 1.00906 * 111.00096 * 325.29636 * 12 10 5 36 36 H 1.09001 * 109.47457 * 294.67255 * 13 12 10 37 37 H 1.09000 * 109.47073 * 54.67547 * 13 12 10 38 38 H 0.97006 * 120.00573 * 185.03267 * 18 17 15 39 39 H 1.08991 * 117.50106 * 0.02562 * 23 14 13 40 40 H 1.08999 * 117.49278 * 145.01950 * 23 14 13 41 41 H 1.08999 * 117.50092 * 214.97819 * 24 14 13 42 42 H 1.09007 * 117.50113 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1968 0.0000 4 6 3.5860 1.1960 -0.0005 5 6 4.2789 -0.0032 0.0002 6 6 3.5831 -1.2003 -0.0001 7 6 2.1981 -1.1957 -0.0005 8 6 4.5601 -2.3564 0.0003 9 6 5.9084 -1.7485 0.4422 10 6 5.7678 -0.2759 0.0022 11 1 6.2716 0.3808 0.7117 12 7 6.3215 -0.0920 -1.3459 13 6 6.7451 1.2988 -1.5559 14 6 7.4351 1.4219 -2.9159 15 6 6.5583 1.1682 -4.1150 16 1 6.5302 0.1870 -4.5655 17 6 5.7920 2.1885 -4.6370 18 7 5.7178 3.3421 -4.0099 19 14 4.8590 1.9325 -6.2349 20 1 5.1070 0.5576 -6.7381 21 1 3.4053 2.1173 -5.9945 22 1 5.3234 2.9192 -7.2429 23 6 8.8995 0.9879 -3.0070 24 6 8.5368 2.4742 -3.0564 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3635 -0.8897 -0.5142 28 1 1.6602 2.1328 0.0006 29 1 4.1275 2.1305 -0.0001 30 1 1.6569 -2.1303 -0.0001 31 1 4.6458 -2.7794 -1.0005 32 1 4.2404 -3.1216 0.7077 33 1 6.0299 -1.8199 1.5230 34 1 6.7384 -2.2300 -0.0749 35 1 5.6592 -0.3787 -2.0510 36 1 5.8729 1.9520 -1.5306 37 1 7.4400 1.5898 -0.7682 38 1 5.1223 4.0346 -4.3368 39 1 9.3711 0.6143 -2.0982 40 1 9.2286 0.5191 -3.9343 41 1 8.6277 2.9827 -4.0163 42 1 8.7698 3.0791 -2.1801 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797587283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:25 Heat of formation + Delta-G solvation = 36.954901 kcal Electronic energy + Delta-G solvation = -20870.706857 eV Core-core repulsion = 18008.291625 eV Total energy + Delta-G solvation = -2862.415232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00341 -37.02023 -35.98604 -32.82400 -31.86992 -31.59607 -29.50145 -27.05878 -25.84419 -25.21470 -23.59390 -22.08156 -20.95530 -20.05661 -19.92492 -18.95550 -16.21659 -15.88782 -15.34990 -14.89366 -14.58632 -14.53366 -14.01562 -13.77729 -13.58794 -13.22433 -12.97507 -12.71017 -12.46614 -12.11396 -11.97317 -11.56264 -11.45990 -11.23613 -11.05686 -10.95910 -10.83817 -10.69631 -10.54766 -10.45930 -10.37298 -10.09213 -9.36649 -8.71778 -8.49680 -8.39372 -8.30786 -7.95911 -7.41932 -5.99588 -4.04840 1.59729 1.67560 3.28752 3.37621 3.41703 3.97452 4.42705 4.61830 4.82813 5.01877 5.07732 5.23794 5.29288 5.30836 5.41511 5.45431 5.60399 5.60851 5.73245 5.76491 5.86999 5.87925 6.03184 6.08708 6.21758 6.26721 6.32645 6.40589 6.47787 6.52965 6.61537 6.70631 6.81632 6.88455 6.89717 6.96737 6.98508 7.20635 7.29467 7.56321 7.59604 7.91515 8.02436 8.30398 8.53569 8.97965 9.60630 11.08281 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.006657 C = 0.005297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.965706 B = 4205.355747 C = 5284.339321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.124 4.124 4 C -0.086 4.086 5 C -0.125 4.125 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.081 4.081 9 C -0.110 4.110 10 C 0.122 3.878 11 H 0.076 0.924 12 N -0.662 5.662 13 C 0.104 3.896 14 C 0.051 3.949 15 C -0.491 4.491 16 H 0.059 0.941 17 C 0.072 3.928 18 N -0.878 5.878 19 Si 0.884 3.116 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.284 1.284 23 C -0.200 4.200 24 C -0.163 4.163 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.350 0.650 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.258 0.742 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 -7.185 10.063 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.105 4.105 5 C -0.126 4.126 6 C -0.089 4.089 7 C -0.134 4.134 8 C -0.118 4.118 9 C -0.148 4.148 10 C 0.012 3.988 11 H 0.094 0.906 12 N -0.292 5.292 13 C -0.025 4.025 14 C 0.050 3.950 15 C -0.529 4.529 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.515 5.515 19 Si 0.712 3.288 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.210 1.210 23 C -0.238 4.238 24 C -0.201 4.201 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.169 0.831 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.522 -7.189 10.170 13.624 hybrid contribution -1.530 0.663 -1.068 1.980 sum -7.052 -6.526 9.102 13.236 Atomic orbital electron populations 1.20731 0.91512 1.02549 1.01818 1.19709 0.95633 0.93074 1.00713 1.21016 0.93913 0.97300 1.01973 1.20856 0.93727 0.97450 0.98487 1.21525 0.97871 0.93179 1.00073 1.20652 0.93308 0.95882 0.99059 1.20383 0.92786 0.97206 1.03008 1.21057 0.93347 0.95449 1.01928 1.22316 0.97121 0.95188 1.00145 1.21093 0.87737 0.96327 0.93659 0.90580 1.60758 1.43147 1.23955 1.01304 1.21503 0.97934 0.86863 0.96163 1.18736 0.85955 0.97411 0.92893 1.20479 1.25199 0.96083 1.11161 0.92260 1.24970 0.96440 0.94989 0.96716 1.69995 1.36948 1.05030 1.39574 0.86668 0.79488 0.78303 0.84374 1.19685 1.21202 1.21043 1.22867 1.03094 0.97953 0.99857 1.22528 1.06930 0.90379 1.00241 0.91595 0.91704 0.91826 0.86354 0.86254 0.86827 0.90127 0.91382 0.91487 0.89417 0.83116 0.94383 0.94568 0.93260 0.91685 0.90958 0.90392 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 2 C -0.09 -1.29 5.88 -104.67 -0.62 -1.91 16 3 C -0.12 -1.92 9.72 -39.41 -0.38 -2.31 16 4 C -0.09 -1.49 9.88 -39.32 -0.39 -1.88 16 5 C -0.12 -2.10 5.46 -104.12 -0.57 -2.67 16 6 C -0.09 -1.36 6.15 -104.12 -0.64 -2.00 16 7 C -0.12 -1.66 9.70 -39.53 -0.38 -2.04 16 8 C -0.08 -1.07 6.76 -26.85 -0.18 -1.25 16 9 C -0.11 -1.49 6.78 -25.32 -0.17 -1.66 16 10 C 0.12 2.03 3.19 -67.84 -0.22 1.81 16 11 H 0.08 1.26 7.74 -51.93 -0.40 0.85 16 12 N -0.66 -13.02 6.26 -106.86 -0.67 -13.69 16 13 C 0.10 2.32 5.44 -3.82 -0.02 2.30 16 14 C 0.05 1.25 1.55 -155.66 -0.24 1.00 16 15 C -0.49 -13.24 8.32 -34.44 -0.29 -13.53 16 16 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 17 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 18 N -0.88 -24.72 12.96 55.43 0.72 -24.00 16 19 Si 0.88 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 C -0.20 -4.50 9.96 -26.69 -0.27 -4.77 16 24 C -0.16 -3.89 9.47 -26.70 -0.25 -4.14 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.67 8.09 -51.92 -0.42 0.25 16 27 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.12 2.10 7.80 -52.49 -0.41 1.69 16 30 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 35 H 0.35 7.49 8.02 -39.29 -0.31 7.18 16 36 H 0.04 0.94 7.69 -51.93 -0.40 0.54 16 37 H 0.04 0.77 7.89 -51.93 -0.41 0.36 16 38 H 0.26 6.98 8.32 -40.82 -0.34 6.65 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -28.16 344.52 -11.10 -39.26 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.97 Total: 8.98 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -4.35 Total: -32.00 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.05 Total: -37.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.16 -11.10 -39.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797587283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.217 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds