Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47257 * 116.74009 * 3 2 1 5 5 C 1.36936 * 119.99901 * 263.91843 * 4 3 2 6 6 H 1.08004 * 120.00122 * 199.36515 * 5 4 3 7 7 C 1.38817 * 120.00127 * 19.35399 * 5 4 3 8 8 N 1.31617 * 119.99759 * 22.31712 * 7 5 4 9 9 Si 1.86803 * 120.00061 * 202.30797 * 7 5 4 10 10 H 1.48497 * 109.46808 * 90.00517 * 9 7 5 11 11 H 1.48495 * 109.46968 * 210.00326 * 9 7 5 12 12 H 1.48499 * 109.47026 * 330.00249 * 9 7 5 13 13 C 1.46499 * 119.99838 * 83.91263 * 4 3 2 14 14 C 1.50698 * 109.47032 * 90.00399 * 13 4 3 15 15 C 1.38232 * 119.99883 * 89.99725 * 14 13 4 16 16 C 1.38236 * 119.99673 * 180.02562 * 15 14 13 17 17 C 1.38231 * 120.00402 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00299 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47309 * 89.99824 * 18 17 16 20 20 C 1.52996 * 109.47423 * 294.99917 * 19 18 17 21 21 C 1.53008 * 109.47135 * 174.99876 * 19 18 17 22 22 C 1.38237 * 119.99846 * 0.25471 * 17 16 15 23 23 C 1.38228 * 119.99818 * 270.02062 * 14 13 4 24 24 H 4.40642 * 5.51378 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47442 * 356.73821 * 3 2 1 26 26 H 1.08999 * 109.47225 * 236.74092 * 3 2 1 27 27 H 0.97000 * 120.00051 * 179.97438 * 8 7 5 28 28 H 1.08992 * 109.47349 * 329.99951 * 13 4 3 29 29 H 1.09003 * 109.46690 * 210.00446 * 13 4 3 30 30 H 1.07996 * 120.00458 * 359.97438 * 15 14 13 31 31 H 1.08006 * 119.99970 * 179.97438 * 16 15 14 32 32 H 1.09004 * 109.47369 * 329.99648 * 18 17 16 33 33 H 1.09008 * 109.47285 * 210.00048 * 18 17 16 34 34 H 1.09002 * 109.47345 * 55.00188 * 19 18 17 35 35 H 1.08998 * 109.47196 * 59.99573 * 20 19 18 36 36 H 1.08999 * 109.47309 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47081 * 300.00433 * 20 19 18 38 38 H 1.08999 * 109.47270 * 180.02562 * 21 19 18 39 39 H 1.08996 * 109.47193 * 300.00092 * 21 19 18 40 40 H 1.09002 * 109.46749 * 59.99947 * 21 19 18 41 41 H 1.07998 * 120.00350 * 179.72712 * 22 17 16 42 42 H 1.07994 * 120.00316 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.6224 -1.2335 5 6 3.4811 -0.1590 -2.3032 6 1 4.1191 0.2391 -3.0784 7 6 3.0132 -1.4630 -2.3911 8 7 1.9288 -1.8185 -1.7353 9 14 3.9222 -2.7129 -3.4403 10 1 4.9474 -3.4001 -2.6145 11 1 2.9582 -3.7127 -3.9656 12 1 4.5837 -2.0194 -4.5746 13 6 3.2508 2.0800 -1.3226 14 6 4.6228 2.5030 -0.8649 15 6 5.6575 2.5959 -1.7768 16 6 6.9162 2.9834 -1.3568 17 6 7.1401 3.2785 -0.0250 18 6 8.5124 3.7004 0.4329 19 6 8.6357 5.2225 0.3396 20 6 8.5483 5.6524 -1.1262 21 6 9.9813 5.6618 0.9205 22 6 6.1065 3.1810 0.8877 23 6 4.8467 2.7976 0.4669 24 1 -1.0500 0.0001 0.0003 25 1 3.0099 -1.0252 0.0585 26 1 3.0091 0.5644 0.8593 27 1 1.6015 -2.7296 -1.7970 28 1 2.4966 2.5444 -0.6874 29 1 3.0994 2.3940 -2.3554 30 1 5.4828 2.3649 -2.8172 31 1 7.7248 3.0556 -2.0692 32 1 9.2664 3.2352 -0.2021 33 1 8.6633 3.3863 1.4658 34 1 7.8272 5.6879 0.9035 35 1 7.5897 5.3394 -1.5400 36 1 8.6366 6.7368 -1.1927 37 1 9.3567 5.1871 -1.6901 38 1 10.0690 6.7463 0.8544 39 1 10.0436 5.3556 1.9647 40 1 10.7898 5.1965 0.3566 41 1 6.2824 3.4073 1.9290 42 1 4.0384 2.7251 1.1794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799201613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = 82.773079 kcal Electronic energy + Delta-G solvation = -20219.219422 eV Core-core repulsion = 17358.791015 eV Total energy + Delta-G solvation = -2860.428407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.24547 -36.67690 -35.51582 -32.21954 -31.54077 -30.46578 -30.26199 -27.42493 -27.21303 -25.98666 -24.55909 -22.21541 -21.72655 -20.37222 -19.79381 -17.39842 -16.45506 -15.80625 -15.17554 -15.05875 -14.74776 -14.41014 -14.28893 -13.67114 -13.48164 -13.28536 -12.94192 -12.91484 -12.34413 -12.22442 -11.92516 -11.84085 -11.53594 -11.37480 -11.17945 -10.95100 -10.81109 -10.78634 -10.66450 -10.43147 -10.35228 -10.21762 -9.97868 -8.93951 -8.76352 -8.43857 -8.39518 -7.98996 -6.96382 -5.76923 -3.19603 1.85229 1.91177 3.38595 3.46319 3.46799 4.09714 4.33849 4.40221 4.56641 4.79339 4.82903 4.92093 5.25232 5.33137 5.36443 5.44906 5.49286 5.57644 5.61313 5.67688 5.74894 5.76517 5.83500 5.85968 5.88157 6.02720 6.03470 6.07498 6.23500 6.25192 6.30029 6.53950 6.60551 6.65617 6.72939 6.95993 7.02286 7.21901 7.30571 7.43406 7.53880 7.77822 8.30216 9.11481 9.21395 9.78297 10.25307 11.26307 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.004429 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.830878 B = 6320.141463 C = 7095.324163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.096 4.096 3 C 0.270 3.730 4 N -0.578 5.578 5 C -0.264 4.264 6 H 0.074 0.926 7 C 0.005 3.995 8 N -0.886 5.886 9 Si 0.898 3.102 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.179 3.821 14 C -0.079 4.079 15 C -0.101 4.101 16 C -0.119 4.119 17 C -0.098 4.098 18 C -0.072 4.072 19 C -0.091 4.091 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.122 4.122 23 C -0.113 4.113 24 H 0.190 0.810 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.254 0.746 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.111 0.889 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.039 12.527 5.000 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.099 4.099 3 C 0.144 3.856 4 N -0.297 5.297 5 C -0.392 4.392 6 H 0.091 0.909 7 C -0.194 4.194 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.052 3.948 14 C -0.082 4.082 15 C -0.120 4.120 16 C -0.137 4.137 17 C -0.098 4.098 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.207 4.207 21 C -0.204 4.204 22 C -0.140 4.140 23 C -0.132 4.132 24 H 0.207 0.793 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.964 12.343 4.963 17.239 hybrid contribution 0.092 -0.976 -0.665 1.184 sum 11.056 11.367 4.299 16.430 Atomic orbital electron populations 1.24175 0.95320 1.06637 1.05804 1.24292 0.95299 0.95024 0.95282 1.17695 0.82798 0.98579 0.86506 1.43955 1.74557 0.99300 1.11893 1.19159 1.24418 0.93957 1.01712 0.90869 1.24907 0.96102 0.98943 0.99445 1.70137 1.19337 1.17945 1.45474 0.86363 0.79313 0.81665 0.79914 1.21456 1.21934 1.20504 1.19805 0.89985 0.85610 0.99371 1.21029 0.98841 0.95005 0.93292 1.21022 0.92496 0.98710 0.99749 1.20923 0.96928 1.00821 0.95039 1.19636 0.95105 1.01334 0.93753 1.20605 0.94025 0.95037 1.01226 1.21078 0.97615 0.95270 0.96963 1.21912 1.02448 1.00451 0.95905 1.21859 0.97081 1.00872 1.00631 1.20877 0.93068 1.01557 0.98529 1.20992 0.96603 0.99925 0.95633 0.79276 0.89112 0.94585 0.93566 0.93517 0.92425 0.86499 0.87070 0.91485 0.91528 0.91228 0.91763 0.93230 0.92961 0.92880 0.92832 0.92788 0.87142 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.92 19.25 29.55 0.57 -6.35 16 2 C -0.10 -2.36 11.50 -37.12 -0.43 -2.79 16 3 C 0.27 6.45 5.41 -6.83 -0.04 6.41 16 4 N -0.58 -14.06 2.47 -177.95 -0.44 -14.50 16 5 C -0.26 -7.04 9.63 -15.06 -0.14 -7.18 16 6 H 0.07 1.92 7.92 -52.48 -0.42 1.51 16 7 C 0.01 0.15 4.82 -17.43 -0.08 0.06 16 8 N -0.89 -25.29 9.61 55.49 0.53 -24.76 16 9 Si 0.90 21.64 29.61 -169.99 -5.03 16.60 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.18 3.66 5.80 -5.19 -0.03 3.63 16 14 C -0.08 -1.43 5.46 -104.63 -0.57 -2.00 16 15 C -0.10 -1.74 9.70 -39.58 -0.38 -2.12 16 16 C -0.12 -1.78 7.96 -39.58 -0.32 -2.09 16 17 C -0.10 -1.36 4.71 -104.63 -0.49 -1.86 16 18 C -0.07 -0.79 4.84 -27.89 -0.14 -0.93 16 19 C -0.09 -0.89 2.91 -90.62 -0.26 -1.15 16 20 C -0.15 -1.47 8.76 37.16 0.33 -1.15 16 21 C -0.15 -1.20 9.19 37.16 0.34 -0.85 16 22 C -0.12 -1.78 9.70 -39.58 -0.38 -2.17 16 23 C -0.11 -1.86 9.70 -39.58 -0.38 -2.24 16 24 H 0.19 3.66 7.80 -54.09 -0.42 3.24 16 25 H 0.09 2.38 6.59 -51.93 -0.34 2.04 16 26 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 29 H 0.06 1.18 7.98 -51.93 -0.41 0.77 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.11 1.45 8.04 -52.48 -0.42 1.03 16 32 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.07 0.69 8.08 -51.92 -0.42 0.27 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.72 6.27 -51.93 -0.33 0.40 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 350.61 15.07 5.28 5.28 Total: -1.00 -29.26 350.61 -9.03 -38.29 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.96 Total: 1.85 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.42 Total: -22.77 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.09 Total: -39.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.26 -9.03 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.066 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds