Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47257 * 116.74009 * 3 2 1 5 5 C 1.36936 * 119.99901 * 263.91843 * 4 3 2 6 6 H 1.08004 * 120.00122 * 199.36515 * 5 4 3 7 7 C 1.38817 * 120.00127 * 19.35399 * 5 4 3 8 8 N 1.31617 * 119.99759 * 22.31712 * 7 5 4 9 9 Si 1.86803 * 120.00061 * 202.30797 * 7 5 4 10 10 H 1.48497 * 109.46808 * 90.00517 * 9 7 5 11 11 H 1.48495 * 109.46968 * 210.00326 * 9 7 5 12 12 H 1.48499 * 109.47026 * 330.00249 * 9 7 5 13 13 C 1.46499 * 119.99838 * 83.91263 * 4 3 2 14 14 C 1.50698 * 109.47032 * 90.00399 * 13 4 3 15 15 C 1.38232 * 119.99883 * 89.99725 * 14 13 4 16 16 C 1.38236 * 119.99673 * 180.02562 * 15 14 13 17 17 C 1.38231 * 120.00402 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00299 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47309 * 89.99824 * 18 17 16 20 20 C 1.52996 * 109.47423 * 294.99917 * 19 18 17 21 21 C 1.53008 * 109.47135 * 174.99876 * 19 18 17 22 22 C 1.38237 * 119.99846 * 0.25471 * 17 16 15 23 23 C 1.38228 * 119.99818 * 270.02062 * 14 13 4 24 24 H 4.40642 * 5.51378 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47442 * 356.73821 * 3 2 1 26 26 H 1.08999 * 109.47225 * 236.74092 * 3 2 1 27 27 H 0.97000 * 120.00051 * 179.97438 * 8 7 5 28 28 H 1.08992 * 109.47349 * 329.99951 * 13 4 3 29 29 H 1.09003 * 109.46690 * 210.00446 * 13 4 3 30 30 H 1.07996 * 120.00458 * 359.97438 * 15 14 13 31 31 H 1.08006 * 119.99970 * 179.97438 * 16 15 14 32 32 H 1.09004 * 109.47369 * 329.99648 * 18 17 16 33 33 H 1.09008 * 109.47285 * 210.00048 * 18 17 16 34 34 H 1.09002 * 109.47345 * 55.00188 * 19 18 17 35 35 H 1.08998 * 109.47196 * 59.99573 * 20 19 18 36 36 H 1.08999 * 109.47309 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47081 * 300.00433 * 20 19 18 38 38 H 1.08999 * 109.47270 * 180.02562 * 21 19 18 39 39 H 1.08996 * 109.47193 * 300.00092 * 21 19 18 40 40 H 1.09002 * 109.46749 * 59.99947 * 21 19 18 41 41 H 1.07998 * 120.00350 * 179.72712 * 22 17 16 42 42 H 1.07994 * 120.00316 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.6224 -1.2335 5 6 3.4811 -0.1590 -2.3032 6 1 4.1191 0.2391 -3.0784 7 6 3.0132 -1.4630 -2.3911 8 7 1.9288 -1.8185 -1.7353 9 14 3.9222 -2.7129 -3.4403 10 1 4.9474 -3.4001 -2.6145 11 1 2.9582 -3.7127 -3.9656 12 1 4.5837 -2.0194 -4.5746 13 6 3.2508 2.0800 -1.3226 14 6 4.6228 2.5030 -0.8649 15 6 5.6575 2.5959 -1.7768 16 6 6.9162 2.9834 -1.3568 17 6 7.1401 3.2785 -0.0250 18 6 8.5124 3.7004 0.4329 19 6 8.6357 5.2225 0.3396 20 6 8.5483 5.6524 -1.1262 21 6 9.9813 5.6618 0.9205 22 6 6.1065 3.1810 0.8877 23 6 4.8467 2.7976 0.4669 24 1 -1.0500 0.0001 0.0003 25 1 3.0099 -1.0252 0.0585 26 1 3.0091 0.5644 0.8593 27 1 1.6015 -2.7296 -1.7970 28 1 2.4966 2.5444 -0.6874 29 1 3.0994 2.3940 -2.3554 30 1 5.4828 2.3649 -2.8172 31 1 7.7248 3.0556 -2.0692 32 1 9.2664 3.2352 -0.2021 33 1 8.6633 3.3863 1.4658 34 1 7.8272 5.6879 0.9035 35 1 7.5897 5.3394 -1.5400 36 1 8.6366 6.7368 -1.1927 37 1 9.3567 5.1871 -1.6901 38 1 10.0690 6.7463 0.8544 39 1 10.0436 5.3556 1.9647 40 1 10.7898 5.1965 0.3566 41 1 6.2824 3.4073 1.9290 42 1 4.0384 2.7251 1.1794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799201613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = 70.979078 kcal Electronic energy + Delta-G solvation = -20219.730848 eV Core-core repulsion = 17358.791015 eV Total energy + Delta-G solvation = -2860.939833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45431 -38.09852 -36.81030 -33.77345 -33.44758 -31.82059 -31.68348 -28.78276 -27.92889 -27.88175 -25.96823 -23.51575 -23.32528 -21.61335 -20.72770 -19.30104 -18.25003 -17.04582 -16.91815 -16.34473 -16.02374 -15.59021 -15.49039 -15.19330 -15.03787 -14.77160 -14.16149 -14.14551 -13.51568 -13.40182 -13.20847 -12.98920 -12.96077 -12.76021 -12.73159 -12.45447 -12.27825 -12.18622 -11.98742 -11.72197 -11.59065 -11.45479 -11.42969 -10.80833 -10.71306 -10.34849 -9.63744 -9.28433 -8.89110 -7.82714 -5.25988 0.59956 0.66974 1.45725 1.48654 1.55648 2.32329 2.51492 2.59108 3.00363 3.28733 3.91106 3.94603 3.97835 4.09572 4.13778 4.17712 4.26947 4.29604 4.44932 4.50467 4.73048 4.78178 4.83795 4.88759 4.89090 4.97021 5.01330 5.04339 5.12458 5.14412 5.24753 5.27221 5.34758 5.41984 5.50082 5.54300 5.61506 5.67539 5.71799 5.85960 5.97166 6.28525 6.31071 7.09922 7.35102 7.81865 8.26193 9.18193 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.004429 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.830878 B = 6320.141463 C = 7095.324163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.136 4.136 3 C 0.275 3.725 4 N -0.591 5.591 5 C -0.265 4.265 6 H 0.071 0.929 7 C -0.043 4.043 8 N -0.912 5.912 9 Si 0.956 3.044 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.272 1.272 13 C 0.183 3.817 14 C -0.100 4.100 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.090 4.090 18 C -0.070 4.070 19 C -0.088 4.088 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.123 4.123 23 C -0.121 4.121 24 H 0.223 0.777 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.246 0.754 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.137 0.863 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.791 13.647 5.748 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.138 4.138 3 C 0.150 3.850 4 N -0.311 5.311 5 C -0.395 4.395 6 H 0.089 0.911 7 C -0.240 4.240 8 N -0.556 5.556 9 Si 0.785 3.215 10 H -0.215 1.215 11 H -0.226 1.226 12 H -0.197 1.197 13 C 0.058 3.942 14 C -0.102 4.102 15 C -0.137 4.137 16 C -0.137 4.137 17 C -0.090 4.090 18 C -0.107 4.107 19 C -0.106 4.106 20 C -0.208 4.208 21 C -0.201 4.201 22 C -0.141 4.141 23 C -0.139 4.139 24 H 0.239 0.761 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.154 0.846 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.737 13.500 5.710 19.418 hybrid contribution -0.427 -1.209 -0.872 1.550 sum 12.310 12.291 4.838 18.056 Atomic orbital electron populations 1.25006 0.96343 1.05128 1.04437 1.24666 0.96135 0.96418 0.96619 1.17571 0.82875 0.97318 0.87262 1.44118 1.74776 1.00705 1.11466 1.19391 1.23562 0.94469 1.02047 0.91109 1.25536 0.96864 1.00407 1.01161 1.70286 1.20600 1.17518 1.47227 0.85439 0.77935 0.79404 0.78711 1.21524 1.22587 1.19653 1.19810 0.91813 0.83607 0.99012 1.20735 0.97594 0.97426 0.94458 1.21066 0.93495 0.99784 0.99316 1.21122 0.96386 1.00109 0.96103 1.20011 0.96478 0.99387 0.93140 1.20670 0.92098 0.95986 1.01945 1.21045 0.98547 0.94159 0.96860 1.21913 1.01668 1.01125 0.96057 1.21825 0.95975 1.01375 1.00930 1.21180 0.92288 1.00572 1.00015 1.21108 0.97832 1.00089 0.94905 0.76062 0.92037 0.92238 0.94418 0.93093 0.93415 0.87449 0.85256 0.90794 0.90350 0.91750 0.93502 0.92390 0.92347 0.92199 0.92197 0.92342 0.84551 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.19 19.25 74.32 1.43 -11.76 16 2 C -0.14 -6.71 11.50 31.12 0.36 -6.35 16 3 C 0.28 13.39 5.41 84.57 0.46 13.84 16 4 N -0.59 -29.25 2.47 -716.91 -1.77 -31.02 16 5 C -0.27 -14.38 9.63 84.03 0.81 -13.57 16 6 H 0.07 3.79 7.92 -2.91 -0.02 3.76 16 7 C -0.04 -2.39 4.82 84.86 0.41 -1.98 16 8 N -0.91 -53.03 9.61 21.65 0.21 -52.82 16 9 Si 0.96 45.17 29.61 68.60 2.03 47.20 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.18 7.64 5.80 85.63 0.50 8.13 16 14 C -0.10 -3.63 5.46 -19.87 -0.11 -3.74 16 15 C -0.12 -4.05 9.70 22.27 0.22 -3.84 16 16 C -0.12 -3.40 7.96 22.27 0.18 -3.22 16 17 C -0.09 -2.30 4.71 -19.87 -0.09 -2.39 16 18 C -0.07 -1.32 4.84 29.85 0.14 -1.18 16 19 C -0.09 -1.46 2.91 -10.79 -0.03 -1.49 16 20 C -0.15 -2.62 8.76 71.98 0.63 -1.99 16 21 C -0.14 -1.88 9.19 71.98 0.66 -1.21 16 22 C -0.12 -3.31 9.70 22.27 0.22 -3.10 16 23 C -0.12 -3.86 9.70 22.27 0.22 -3.64 16 24 H 0.22 8.14 7.80 -4.42 -0.03 8.10 16 25 H 0.06 3.33 6.59 -2.39 -0.02 3.32 16 26 H 0.06 2.54 8.12 -2.39 -0.02 2.52 16 27 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 29 H 0.05 2.02 7.98 -2.39 -0.02 2.01 16 30 H 0.11 3.79 8.06 -2.91 -0.02 3.76 16 31 H 0.13 3.15 8.04 -2.91 -0.02 3.12 16 32 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 33 H 0.08 1.34 8.08 -2.38 -0.02 1.32 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 0.98 6.27 -2.39 -0.01 0.96 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.12 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -62.51 350.61 7.41 -55.10 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.96 Total: 19.05 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 5.99 Total: -37.51 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.56 Total: -83.84 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -62.51 7.41 -55.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799201613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.076 kcal (2) G-P(sol) polarization free energy of solvation -62.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds