Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39541 * 120.14353 * 295.13967 * 3 2 1 5 5 C 1.37973 * 119.85371 * 179.72735 * 4 3 2 6 6 C 1.38344 * 120.14490 * 0.52916 * 5 4 3 7 7 C 1.50701 * 119.85849 * 179.74805 * 6 5 4 8 8 N 1.46901 * 109.46887 * 277.68111 * 7 6 5 9 9 C 1.46896 * 111.00113 * 169.22604 * 8 7 6 10 10 C 1.50701 * 109.47193 * 195.82743 * 9 8 7 11 11 H 1.07994 * 120.00087 * 5.03879 * 10 9 8 12 12 C 1.37881 * 119.99738 * 185.04126 * 10 9 8 13 13 N 1.31514 * 120.00372 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99621 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47685 * 0.02562 * 14 12 10 16 16 H 1.48511 * 109.47146 * 120.00382 * 14 12 10 17 17 H 1.48504 * 109.47230 * 239.99715 * 14 12 10 18 18 C 1.46897 * 111.00055 * 293.18079 * 8 7 6 19 19 C 1.53006 * 109.47074 * 87.96673 * 18 8 7 20 20 C 1.53001 * 109.47026 * 65.92076 * 19 18 8 21 21 C 1.52998 * 109.46883 * 185.91794 * 19 18 8 22 22 C 1.38347 * 120.28539 * 359.76676 * 6 5 4 23 23 C 1.37979 * 120.13935 * 359.95548 * 22 6 5 24 24 H 4.52066 * 14.02115 * 359.97438 * 4 2 1 25 25 H 1.07997 * 120.06988 * 359.97170 * 4 3 2 26 26 H 1.08007 * 119.92426 * 180.25768 * 5 4 3 27 27 H 1.09001 * 109.47013 * 37.68057 * 7 6 5 28 28 H 1.08992 * 109.47172 * 157.68200 * 7 6 5 29 29 H 1.08998 * 109.46873 * 315.82841 * 9 8 7 30 30 H 1.09001 * 109.46823 * 75.82795 * 9 8 7 31 31 H 0.96996 * 120.00244 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47209 * 207.96585 * 18 8 7 33 33 H 1.09001 * 109.47284 * 327.97294 * 18 8 7 34 34 H 1.08996 * 109.47260 * 305.91561 * 19 18 8 35 35 H 1.09004 * 109.46746 * 304.84437 * 20 19 18 36 36 H 1.08995 * 109.47081 * 64.84444 * 20 19 18 37 37 H 1.08994 * 109.46895 * 184.84432 * 20 19 18 38 38 H 1.09000 * 109.47717 * 60.00539 * 21 19 18 39 39 H 1.09002 * 109.47173 * 180.02562 * 21 19 18 40 40 H 1.09007 * 109.47435 * 299.99882 * 21 19 18 41 41 H 1.08000 * 119.92994 * 179.97438 * 22 6 5 42 42 H 1.08003 * 120.06722 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3070 -0.5117 1.0924 5 6 4.6867 -0.5133 1.0837 6 6 5.3752 0.0016 -0.0002 7 6 6.8822 0.0018 -0.0005 8 7 7.3718 1.1623 0.7555 9 6 8.8175 1.0622 0.9959 10 6 9.2152 2.0328 2.0779 11 1 8.4587 2.6023 2.5973 12 6 10.5450 2.1938 2.4048 13 7 11.4663 1.5008 1.7721 14 14 11.0380 3.3975 3.7455 15 1 9.8229 4.0480 4.2981 16 1 11.7451 2.6689 4.8293 17 1 11.9381 4.4319 3.1755 18 6 7.0379 2.4171 0.0685 19 6 5.6500 2.8863 0.5094 20 6 5.6846 3.2574 1.9934 21 6 5.2403 4.1098 -0.3128 22 6 4.6862 0.5166 -1.0837 23 6 3.3064 0.5189 -1.0899 24 1 -1.0499 0.0002 0.0007 25 1 2.7707 -0.9097 1.9411 26 1 5.2304 -0.9133 1.9268 27 1 7.2457 -0.9145 0.4646 28 1 7.2453 0.0572 -1.0266 29 1 9.0643 0.0478 1.3091 30 1 9.3556 1.3004 0.0784 31 1 12.4018 1.6143 2.0018 32 1 7.7762 3.1778 0.3223 33 1 7.0407 2.2532 -1.0091 34 1 4.9284 2.0846 0.3521 35 1 6.0589 2.4119 2.5706 36 1 6.3411 4.1153 2.1381 37 1 4.6784 3.5091 2.3284 38 1 5.2155 3.8456 -1.3700 39 1 4.2516 4.4444 0.0016 40 1 5.9618 4.9116 -0.1554 41 1 5.2295 0.9175 -1.9267 42 1 2.7697 0.9216 -1.9362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809538712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = 70.015998 kcal Electronic energy + Delta-G solvation = -20789.497852 eV Core-core repulsion = 17928.516256 eV Total energy + Delta-G solvation = -2860.981595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62842 -37.15190 -34.16322 -33.75098 -32.42072 -30.86808 -30.51756 -27.20554 -26.54884 -26.13415 -24.04957 -22.48334 -21.76576 -20.45758 -19.34792 -18.89817 -16.45528 -15.89927 -15.49787 -15.14513 -14.89935 -14.39823 -14.18133 -13.68023 -13.36689 -13.29980 -13.06444 -12.98594 -12.43084 -12.23842 -11.72459 -11.62012 -11.47373 -11.34311 -11.18606 -10.96739 -10.94879 -10.70008 -10.56803 -10.43209 -10.25877 -10.04213 -9.79898 -9.71507 -9.21897 -8.77395 -8.43492 -8.14231 -7.24661 -6.01894 -4.02596 1.03740 1.54751 2.68739 3.03880 3.31022 3.38989 3.44101 4.07212 4.23581 4.44167 4.92929 5.05718 5.07552 5.17100 5.33505 5.49823 5.50984 5.56171 5.64350 5.64757 5.83205 5.90279 6.01624 6.08287 6.16462 6.21777 6.24952 6.32902 6.40136 6.50288 6.55027 6.56902 6.60710 6.70907 6.85935 7.02417 7.07519 7.11260 7.27435 7.35878 7.46971 7.85706 8.10401 8.20172 8.54801 9.07426 9.61878 11.08617 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.004597 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.432951 B = 6089.747844 C = 6356.204043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.012 4.012 4 C -0.094 4.094 5 C -0.099 4.099 6 C -0.041 4.041 7 C 0.085 3.915 8 N -0.526 5.526 9 C 0.192 3.808 10 C -0.501 4.501 11 H 0.067 0.933 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.068 3.932 19 C -0.101 4.101 20 C -0.132 4.132 21 C -0.144 4.144 22 C -0.113 4.113 23 C -0.097 4.097 24 H 0.221 0.779 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.026 0.974 30 H -0.005 1.005 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.019 0.981 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.122 0.878 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 -1.860 -5.038 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 C -0.012 4.012 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.042 4.042 7 C -0.043 4.043 8 N -0.250 5.250 9 C 0.067 3.933 10 C -0.539 4.539 11 H 0.085 0.915 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.060 4.060 19 C -0.120 4.120 20 C -0.190 4.190 21 C -0.202 4.202 22 C -0.131 4.131 23 C -0.115 4.115 24 H 0.238 0.762 25 H 0.140 0.860 26 H 0.148 0.852 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.140 0.860 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.586 -1.884 -4.578 17.309 hybrid contribution 0.646 0.703 -0.090 0.959 sum -15.940 -1.181 -4.668 16.652 Atomic orbital electron populations 1.24786 0.95713 1.00894 1.00332 1.20203 0.92148 1.00407 1.00521 1.15893 0.86217 1.03045 0.96041 1.21145 0.94186 0.98885 0.96999 1.20976 0.93141 0.99422 0.98163 1.20108 0.96382 0.94552 0.93140 1.21170 0.89567 0.96639 0.96925 1.62085 1.19030 0.99309 1.44565 1.19784 0.79920 0.97630 0.95917 1.21231 0.91776 1.22571 1.18358 0.91453 1.24985 0.96609 0.96309 0.96773 1.69966 1.00709 1.41487 1.41851 0.86498 0.78537 0.80954 0.81799 1.19602 1.21104 1.21212 1.22076 0.96530 0.93363 0.94044 1.21401 0.97845 0.97134 0.95624 1.21663 0.99098 1.02056 0.96138 1.21807 1.00453 0.98585 0.99321 1.20955 0.93543 0.99899 0.98730 1.21046 0.93967 0.99147 0.97306 0.76212 0.86034 0.85185 0.90262 0.94909 0.95628 0.98706 0.93067 0.90276 0.96266 0.90306 0.90901 0.93624 0.94972 0.93610 0.93496 0.93062 0.85956 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.05 19.25 29.55 0.57 -1.48 16 2 C -0.13 -1.68 13.24 -38.84 -0.51 -2.19 16 3 C -0.01 -0.16 5.72 -107.00 -0.61 -0.77 16 4 C -0.09 -1.24 9.75 -39.19 -0.38 -1.62 16 5 C -0.10 -1.40 9.66 -39.64 -0.38 -1.78 16 6 C -0.04 -0.61 3.46 -104.54 -0.36 -0.97 16 7 C 0.09 1.45 5.01 -4.97 -0.02 1.42 16 8 N -0.53 -10.62 3.79 -237.52 -0.90 -11.52 16 9 C 0.19 4.79 4.67 -4.98 -0.02 4.76 16 10 C -0.50 -13.58 8.32 -34.44 -0.29 -13.87 16 11 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 12 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 13 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 14 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.07 1.29 3.93 -3.82 -0.02 1.27 16 19 C -0.10 -1.67 2.62 -90.62 -0.24 -1.90 16 20 C -0.13 -2.31 9.14 37.16 0.34 -1.97 16 21 C -0.14 -2.06 9.19 37.16 0.34 -1.72 16 22 C -0.11 -1.52 7.28 -39.64 -0.29 -1.81 16 23 C -0.10 -1.24 9.66 -39.19 -0.38 -1.61 16 24 H 0.22 1.33 7.80 -54.09 -0.42 0.91 16 25 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 26 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 27 H 0.08 1.34 7.83 -51.93 -0.41 0.94 16 28 H 0.03 0.55 7.76 -51.93 -0.40 0.14 16 29 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 30 H 0.00 -0.13 8.05 -51.93 -0.42 -0.55 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.08 1.70 7.04 -51.93 -0.37 1.34 16 33 H 0.02 0.34 7.64 -51.93 -0.40 -0.05 16 34 H 0.08 1.28 3.85 -51.93 -0.20 1.08 16 35 H 0.07 1.42 7.66 -51.93 -0.40 1.03 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 41 H 0.12 1.53 8.05 -52.49 -0.42 1.11 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -29.14 348.80 -9.05 -38.19 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.76 Total: 0.06 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -2.35 Total: -22.83 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.16 Total: -37.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.14 -9.05 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809538712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.203 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds