Wall clock time and date at job start Mon Mar 30 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47073 * 2 1 4 4 N 1.46505 * 109.47366 * 240.00059 * 2 1 3 5 5 C 1.46496 * 120.00122 * 244.01172 * 4 2 1 6 6 C 1.50701 * 109.47565 * 84.59479 * 5 4 2 7 7 H 1.08000 * 119.99269 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00275 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00144 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99972 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47048 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47310 * 120.00118 * 10 8 6 13 13 H 1.48502 * 109.47103 * 239.99858 * 10 8 6 14 14 C 1.34780 * 119.99702 * 64.00755 * 4 2 1 15 15 O 1.21271 * 120.00442 * 355.26185 * 14 4 2 16 16 C 1.50707 * 119.99797 * 175.26305 * 14 4 2 17 17 F 1.39900 * 109.47043 * 52.01734 * 16 14 4 18 18 C 1.53003 * 109.46698 * 292.02161 * 16 14 4 19 19 C 1.53004 * 109.46779 * 179.97438 * 18 16 14 20 20 C 1.53000 * 109.47099 * 59.99846 * 19 18 16 21 21 C 1.53000 * 109.47086 * 299.99674 * 20 19 18 22 22 C 1.53000 * 109.47166 * 172.02016 * 16 14 4 23 23 H 1.09001 * 109.47266 * 174.15466 * 1 2 3 24 24 H 1.08994 * 109.47358 * 294.15590 * 1 2 3 25 25 H 1.09001 * 109.47252 * 54.16058 * 1 2 3 26 26 H 1.08997 * 109.47325 * 119.99757 * 2 1 3 27 27 H 1.09008 * 109.47086 * 307.78144 * 3 2 1 28 28 H 1.08992 * 109.47112 * 67.78370 * 3 2 1 29 29 H 1.09001 * 109.47334 * 187.78610 * 3 2 1 30 30 H 1.09003 * 109.47283 * 204.59953 * 5 4 2 31 31 H 1.09003 * 109.47003 * 324.59392 * 5 4 2 32 32 H 0.96994 * 120.00146 * 180.02562 * 9 8 6 33 33 H 1.08992 * 109.47030 * 299.99484 * 18 16 14 34 34 H 1.08999 * 109.47302 * 60.00174 * 18 16 14 35 35 H 1.09005 * 109.47129 * 299.99904 * 19 18 16 36 36 H 1.08998 * 109.47193 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.47595 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.47231 * 59.99639 * 20 19 18 39 39 H 1.08999 * 109.47662 * 300.00526 * 21 20 19 40 40 H 1.09000 * 109.47463 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.46648 * 299.99724 * 22 16 14 42 42 H 1.08998 * 109.47231 * 59.99580 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.7867 -1.9309 -1.0636 6 6 1.8405 -3.0975 -0.9421 7 1 0.7735 -2.9315 -0.9613 8 6 2.3369 -4.3764 -0.8054 9 7 3.6363 -4.5784 -0.7815 10 14 1.1640 -5.8225 -0.6556 11 1 -0.2364 -5.3318 -0.7107 12 1 1.4013 -6.7703 -1.7738 13 1 1.3948 -6.5151 0.6376 14 6 1.7607 -0.1849 -2.4187 15 8 1.0529 0.7931 -2.5335 16 6 2.3523 -0.8348 -3.6430 17 9 2.0629 -2.2035 -3.6302 18 6 3.8691 -0.6342 -3.6443 19 6 4.4697 -1.2946 -4.8869 20 6 3.8700 -0.6587 -6.1426 21 6 2.3532 -0.8594 -6.1413 22 6 1.7525 -0.1984 -4.8984 23 1 -0.3634 -1.0223 -0.1047 24 1 -0.3634 0.4205 0.9376 25 1 -0.3634 0.6017 -0.8331 26 1 1.8933 -0.5138 0.8900 27 1 1.5674 1.9950 -0.8123 28 1 1.7947 1.9146 0.9513 29 1 3.1210 1.4457 -0.1392 30 1 3.4165 -2.0639 -1.9432 31 1 3.4130 -1.8768 -0.1731 32 1 3.9855 -5.4782 -0.6857 33 1 4.0945 0.4321 -3.6542 34 1 4.2963 -1.0876 -2.7499 35 1 4.2442 -2.3610 -4.8765 36 1 5.5502 -1.1513 -4.8881 37 1 4.2975 -1.1295 -7.0279 38 1 4.0954 0.4076 -6.1530 39 1 2.1277 -1.9258 -6.1308 40 1 1.9259 -0.4061 -7.0356 41 1 0.6719 -0.3414 -4.8973 42 1 1.9779 0.8680 -4.9083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811899487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:42 Heat of formation + Delta-G solvation = -115.094687 kcal Electronic energy + Delta-G solvation = -23265.105293 eV Core-core repulsion = 19965.327471 eV Total energy + Delta-G solvation = -3299.777822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.69184 -41.04057 -38.41578 -37.08982 -34.99978 -33.44825 -31.77938 -31.21152 -28.93340 -28.03508 -25.41762 -24.46974 -23.76929 -22.64437 -20.61070 -19.94287 -18.65605 -17.94710 -17.42646 -16.84604 -16.40108 -16.28129 -15.81153 -15.50754 -15.41845 -14.59792 -14.54988 -14.30061 -14.08347 -14.00442 -13.67908 -13.47611 -13.24405 -13.09879 -13.02168 -12.88638 -12.74166 -12.70786 -12.49785 -12.23049 -12.12540 -12.02385 -11.86340 -11.62882 -11.48380 -11.34816 -10.93728 -10.55597 -10.21738 -9.47364 -8.16538 -6.25847 1.36590 1.39179 1.48630 1.56778 2.18561 2.42852 3.14500 3.33475 3.53138 3.60578 3.77131 4.03902 4.17383 4.20145 4.24433 4.32976 4.37800 4.41379 4.48652 4.61598 4.70479 4.76346 4.84568 4.92719 4.95167 4.98269 5.05684 5.09430 5.15665 5.20581 5.21528 5.28636 5.29591 5.35431 5.42077 5.53842 5.70951 5.89399 6.11683 6.55021 6.82718 7.20585 7.42767 8.90155 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.009362 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.004214 B = 2989.957595 C = 4189.611490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 C -0.152 4.152 4 N -0.585 5.585 5 C 0.238 3.762 6 C -0.524 4.524 7 H 0.042 0.958 8 C 0.022 3.978 9 N -0.919 5.919 10 Si 0.948 3.052 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.494 3.506 15 O -0.565 6.565 16 C 0.104 3.896 17 F -0.194 7.194 18 C -0.139 4.139 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.115 4.115 23 H 0.034 0.966 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 9.240 -6.434 11.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 C -0.210 4.210 4 N -0.315 5.315 5 C 0.118 3.882 6 C -0.562 4.562 7 H 0.061 0.939 8 C -0.177 4.177 9 N -0.559 5.559 10 Si 0.774 3.226 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.281 3.719 15 O -0.447 6.447 16 C 0.083 3.917 17 F -0.175 7.175 18 C -0.177 4.177 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.153 4.153 23 H 0.053 0.947 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.869 9.554 -6.425 11.546 hybrid contribution -0.650 -1.453 0.548 1.684 sum 0.219 8.101 -5.876 10.010 Atomic orbital electron populations 1.22051 0.95142 1.00984 1.02843 1.21157 0.94818 0.93704 0.87324 1.22080 1.00622 0.94829 1.03429 1.48398 1.52674 1.25090 1.05310 1.19507 0.91067 0.79773 0.97892 1.21509 0.92793 0.92260 1.49680 0.93944 1.25505 0.96429 1.00848 0.94948 1.69990 1.12431 1.22433 1.51074 0.85656 0.79288 0.79764 0.77855 1.20084 1.20552 1.20069 1.21108 0.80920 0.84297 0.85568 1.90525 1.38886 1.28527 1.86720 1.21249 0.98180 0.77405 0.94847 1.92969 1.94760 1.32423 1.97338 1.22256 0.91137 1.03162 1.01114 1.21489 1.00836 0.99515 0.93446 1.21564 0.94288 1.01808 0.97379 1.21571 0.96606 1.00552 0.96780 1.21868 1.00041 1.01206 0.92204 0.94721 0.89723 0.92476 0.89970 0.91973 0.89552 0.93069 0.92868 0.96805 0.92586 0.88826 0.91295 0.93290 0.89505 0.89823 0.90239 0.92901 0.88962 0.92199 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.09 71.98 0.65 -4.84 16 2 C 0.13 4.98 3.28 44.99 0.15 5.13 16 3 C -0.15 -4.73 8.92 71.98 0.64 -4.09 16 4 N -0.59 -25.33 2.41 -802.14 -1.93 -27.27 16 5 C 0.24 11.80 4.30 85.63 0.37 12.16 16 6 C -0.52 -28.71 8.35 25.60 0.21 -28.50 16 7 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 8 C 0.02 1.22 5.46 84.65 0.46 1.69 16 9 N -0.92 -52.15 13.29 21.45 0.28 -51.87 16 10 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 14 C 0.49 20.74 6.17 87.66 0.54 21.28 16 15 O -0.57 -24.06 12.38 -3.00 -0.04 -24.10 16 16 C 0.10 3.96 0.72 -11.54 -0.01 3.96 16 17 F -0.19 -8.95 12.94 44.97 0.58 -8.37 16 18 C -0.14 -4.57 4.65 30.60 0.14 -4.42 16 19 C -0.12 -3.20 5.80 30.60 0.18 -3.02 16 20 C -0.11 -2.48 5.92 30.59 0.18 -2.30 16 21 C -0.12 -2.97 5.80 30.61 0.18 -2.79 16 22 C -0.11 -3.60 4.33 30.61 0.13 -3.46 16 23 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 24 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.06 2.18 6.46 -2.39 -0.02 2.17 16 26 H 0.08 3.09 7.84 -2.39 -0.02 3.07 16 27 H 0.06 2.11 6.30 -2.38 -0.02 2.09 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 2.71 3.62 -2.39 -0.01 2.70 16 31 H 0.01 0.73 8.01 -2.39 -0.02 0.71 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.07 2.61 5.51 -2.39 -0.01 2.60 16 35 H 0.05 1.60 7.80 -2.38 -0.02 1.58 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.52 7.80 -2.39 -0.02 1.50 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.09 2.67 8.01 -2.39 -0.02 2.65 16 Total: -1.00 -62.40 323.41 5.74 -56.66 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.99 Total: 17.87 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 3.83 Total: -9.21 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.65 Total: -79.13 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.58 Total: -8.37 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.40 5.74 -56.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811899487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.435 kcal (2) G-P(sol) polarization free energy of solvation -62.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds