Wall clock time and date at job start Mon Mar 30 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 C 1.50699 * 109.47157 * 239.99978 * 2 1 3 5 5 H 1.07994 * 120.00258 * 239.99962 * 4 2 1 6 6 C 1.37876 * 120.00032 * 59.99802 * 4 2 1 7 7 N 1.31520 * 120.00123 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46944 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46972 * 120.00150 * 8 6 4 11 11 H 1.48495 * 109.47237 * 240.00273 * 8 6 4 12 12 C 1.52997 * 109.47173 * 120.00134 * 2 1 3 13 13 N 1.46500 * 109.47083 * 299.99953 * 12 2 1 14 14 C 1.34782 * 120.00257 * 179.97438 * 13 12 2 15 15 O 1.21276 * 119.99759 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00125 * 180.02562 * 14 13 12 17 17 F 1.39898 * 109.47057 * 310.00200 * 16 14 13 18 18 C 1.52997 * 109.47265 * 70.00174 * 16 14 13 19 19 C 1.52999 * 109.47592 * 180.02562 * 18 16 14 20 20 C 1.53006 * 109.46626 * 300.00035 * 19 18 16 21 21 C 1.52997 * 109.47164 * 59.99702 * 20 19 18 22 22 C 1.52996 * 109.46861 * 190.00154 * 16 14 13 23 23 H 1.09001 * 109.47227 * 299.99770 * 1 2 3 24 24 H 1.09002 * 109.47234 * 59.99872 * 1 2 3 25 25 H 1.09006 * 109.47205 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46764 * 180.02562 * 3 2 1 27 27 H 1.08992 * 109.47174 * 299.99534 * 3 2 1 28 28 H 1.09001 * 109.47529 * 60.00297 * 3 2 1 29 29 H 0.96998 * 120.00186 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47285 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47181 * 59.99375 * 12 2 1 32 32 H 0.97008 * 120.00151 * 0.02562 * 13 12 2 33 33 H 1.09000 * 109.47140 * 59.99748 * 18 16 14 34 34 H 1.09002 * 109.47045 * 299.99841 * 18 16 14 35 35 H 1.08993 * 109.47839 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47160 * 59.99666 * 19 18 16 37 37 H 1.09001 * 109.46998 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47050 * 299.99699 * 20 19 18 39 39 H 1.09000 * 109.47140 * 60.00051 * 21 20 19 40 40 H 1.09001 * 109.47230 * 179.97438 * 21 20 19 41 41 H 1.08992 * 109.47534 * 60.00272 * 22 16 14 42 42 H 1.08996 * 109.47134 * 299.99466 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8160 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5741 -1.4775 3.7808 16 6 1.3740 0.2186 4.9000 17 9 1.6439 1.5871 4.7917 18 6 -0.1353 0.0053 5.0310 19 6 -0.6460 0.7267 6.2799 20 6 0.0578 0.1649 7.5169 21 6 1.5672 0.3783 7.3858 22 6 2.0778 -0.3437 6.1366 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 0.7094 1.1618 -3.4844 30 1 3.1300 -0.7209 1.2494 31 1 1.6766 -1.7489 1.2492 32 1 0.9937 0.7578 2.3564 33 1 -0.3456 -1.0609 5.1154 34 1 -0.6367 0.4059 4.1500 35 1 -1.7211 0.5743 6.3735 36 1 -0.4358 1.7929 6.1951 37 1 -0.3056 0.6791 8.4066 38 1 -0.1524 -0.9013 7.6016 39 1 1.7774 1.4444 7.3011 40 1 2.0685 -0.0215 8.2673 41 1 3.1531 -0.1916 6.0434 42 1 1.8675 -1.4098 6.2210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837894663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:35 Heat of formation + Delta-G solvation = -132.332434 kcal Electronic energy + Delta-G solvation = -22103.126122 eV Core-core repulsion = 18802.600815 eV Total energy + Delta-G solvation = -3300.525307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.00584 -40.94597 -38.63195 -37.90608 -35.11399 -32.93188 -31.82752 -31.58194 -27.60589 -27.58247 -26.98486 -24.46541 -23.72408 -21.65075 -20.71823 -20.57369 -19.02933 -17.84605 -17.41430 -16.98441 -16.64706 -16.21550 -15.97177 -15.57279 -15.44438 -14.82536 -14.63481 -14.43316 -14.31101 -14.09288 -13.61896 -13.27585 -13.23038 -13.19866 -13.11622 -12.83734 -12.71432 -12.58348 -12.29152 -12.15213 -12.08930 -11.69026 -11.52529 -11.48520 -11.32088 -11.05721 -10.78379 -10.62671 -10.42267 -10.07071 -8.03736 -6.19884 1.35821 1.41053 1.45212 1.54499 2.04661 2.46092 3.19973 3.24648 3.38130 3.53288 3.63705 4.10520 4.14252 4.24770 4.35579 4.39027 4.45364 4.47036 4.60356 4.66751 4.82474 4.92638 4.96904 5.01749 5.03144 5.07774 5.15184 5.15733 5.17099 5.26982 5.29516 5.30905 5.49105 5.51653 5.63485 5.65694 6.10708 6.17788 6.40372 6.45024 6.83831 7.05241 7.48086 8.95525 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.040884 B = 0.004187 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.696804 B = 6686.501751 C = 6900.000313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.145 3.855 13 N -0.700 5.700 14 C 0.486 3.514 15 O -0.570 6.570 16 C 0.114 3.886 17 F -0.198 7.198 18 C -0.137 4.137 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.122 4.122 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 1.619 18.364 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.021 3.979 13 N -0.351 5.351 14 C 0.271 3.729 15 O -0.449 6.449 16 C 0.093 3.907 17 F -0.179 7.179 18 C -0.175 4.175 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.161 4.161 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.246 0.754 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.032 1.076 18.261 18.732 hybrid contribution 0.433 -0.064 -1.516 1.578 sum -3.599 1.012 16.745 17.158 Atomic orbital electron populations 1.21667 0.96902 0.98863 1.00361 1.18377 0.93456 0.92887 0.90334 1.21680 0.97913 0.98040 1.00272 1.21272 1.31761 1.12194 0.91438 0.93610 1.25463 0.95093 0.95576 1.01011 1.69916 1.36997 1.23265 1.23597 0.85681 0.78140 0.78694 0.80135 1.19965 1.20624 1.20791 1.21383 0.97155 0.95344 0.83979 1.46199 1.51934 1.31500 1.05429 1.21488 0.80393 0.85198 0.85831 1.90665 1.38998 1.28115 1.87154 1.21258 0.99449 0.76309 0.93680 1.92866 1.95368 1.32596 1.97067 1.22176 0.89960 1.03727 1.01646 1.21533 1.01157 0.99980 0.92609 1.21610 0.94034 1.02002 0.98142 1.21569 0.96976 1.00616 0.96225 1.21922 0.99891 1.01693 0.92545 0.94670 0.91804 0.95915 0.96359 0.91698 0.94921 0.92994 0.94213 0.93537 0.75436 0.89127 0.90155 0.89215 0.91409 0.89704 0.91100 0.91642 0.89563 0.91771 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 4 C -0.53 -27.99 8.01 25.60 0.21 -27.78 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 6 C 0.03 1.50 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.97 9.35 21.45 0.20 -47.77 16 8 Si 0.95 42.58 29.54 68.60 2.03 44.61 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.14 6.24 4.50 86.38 0.39 6.63 16 13 N -0.70 -25.24 4.93 -463.07 -2.28 -27.52 16 14 C 0.49 16.93 6.79 87.66 0.60 17.53 16 15 O -0.57 -23.54 15.98 -3.02 -0.05 -23.59 16 16 C 0.11 3.01 1.05 -11.54 -0.01 3.00 16 17 F -0.20 -5.52 15.70 44.97 0.71 -4.81 16 18 C -0.14 -2.82 4.98 30.59 0.15 -2.67 16 19 C -0.12 -1.78 5.80 30.60 0.18 -1.60 16 20 C -0.12 -1.63 5.92 30.60 0.18 -1.44 16 21 C -0.12 -1.92 5.80 30.61 0.18 -1.75 16 22 C -0.12 -2.83 4.35 30.61 0.13 -2.70 16 23 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 24 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 25 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 28 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 29 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.41 13.42 6.13 -92.70 -0.57 12.86 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.11 7.80 -2.39 -0.02 1.09 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 1.14 7.80 -2.39 -0.02 1.12 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 2.04 7.99 -2.39 -0.02 2.02 16 Total: -1.00 -59.37 327.05 4.60 -54.77 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.43 Total: 20.57 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 3.57 Total: -16.24 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.08 Total: -75.29 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.71 Total: -4.81 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -59.37 4.60 -54.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837894663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.566 kcal (2) G-P(sol) polarization free energy of solvation -59.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds