Wall clock time and date at job start Mon Mar 30 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38077 * 119.83177 * 2 1 4 4 C 1.38218 * 119.83206 * 180.02562 * 3 2 1 5 5 C 1.38063 * 119.86809 * 0.10639 * 4 3 2 6 6 C 1.38690 * 120.37452 * 359.94930 * 5 4 3 7 7 C 1.37865 * 119.72665 * 359.89580 * 6 5 4 8 8 C 1.50725 * 121.66020 * 180.26718 * 7 6 5 9 9 C 1.52900 * 109.94443 * 343.16141 * 8 7 6 10 10 N 1.47157 * 108.49469 * 50.41451 * 9 8 7 11 11 C 1.46908 * 110.99322 * 165.27468 * 10 9 8 12 12 C 1.53006 * 109.46720 * 198.97354 * 11 10 9 13 13 C 1.50705 * 115.54867 * 54.58859 * 12 11 10 14 14 H 1.07997 * 119.99987 * 271.72957 * 13 12 11 15 15 C 1.37884 * 119.99514 * 91.45182 * 13 12 11 16 16 N 1.31511 * 119.99466 * 172.84740 * 15 13 12 17 17 Si 1.86797 * 120.00181 * 352.84881 * 15 13 12 18 18 H 1.48504 * 109.46958 * 93.81415 * 17 15 13 19 19 H 1.48498 * 109.47336 * 213.81260 * 17 15 13 20 20 H 1.48495 * 109.47329 * 333.81413 * 17 15 13 21 21 C 1.52995 * 117.49844 * 200.25858 * 12 11 10 22 22 C 1.52994 * 117.50024 * 268.91917 * 12 11 10 23 23 C 1.46626 * 110.26719 * 288.70291 * 10 9 8 24 24 H 1.09004 * 109.47114 * 269.97744 * 1 2 3 25 25 H 1.09001 * 109.46847 * 29.97115 * 1 2 3 26 26 H 1.08998 * 109.47347 * 149.97046 * 1 2 3 27 27 H 1.08004 * 120.08776 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.06663 * 180.08133 * 4 3 2 29 29 H 1.08002 * 119.81065 * 180.02562 * 5 4 3 30 30 H 1.09007 * 109.38821 * 103.29678 * 8 7 6 31 31 H 1.09003 * 109.39132 * 223.09585 * 8 7 6 32 32 H 1.08998 * 109.63174 * 290.70833 * 9 8 7 33 33 H 1.09006 * 109.62914 * 170.11885 * 9 8 7 34 34 H 1.08998 * 109.47007 * 78.97968 * 11 10 9 35 35 H 1.08993 * 109.47251 * 318.97083 * 11 10 9 36 36 H 0.97005 * 119.99795 * 179.97438 * 16 15 13 37 37 H 1.09001 * 117.49979 * 215.00471 * 21 12 11 38 38 H 1.09002 * 117.50184 * 0.02868 * 21 12 11 39 39 H 1.09005 * 117.49727 * 359.97438 * 22 12 11 40 40 H 1.09008 * 117.50008 * 144.97277 * 22 12 11 41 41 H 1.09007 * 109.26858 * 172.72659 * 23 10 9 42 42 H 1.08997 * 109.27206 * 292.23744 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1938 1.1978 0.0000 4 6 3.5760 1.1978 -0.0005 5 6 4.2636 0.0006 -0.0033 6 6 3.5752 -1.2035 -0.0045 7 6 2.1966 -1.2027 -0.0007 8 6 1.4048 -2.4852 0.0042 9 6 2.3002 -3.6526 -0.4121 10 7 3.5275 -3.6119 0.3988 11 6 4.2636 -4.8796 0.3035 12 6 5.2374 -4.9934 1.4782 13 6 4.6252 -4.8420 2.8470 14 1 4.5303 -3.8620 3.2907 15 6 4.1810 -5.9542 3.5303 16 7 3.7774 -5.8422 4.7769 17 14 4.1525 -7.6199 2.6853 18 1 5.4126 -8.3473 2.9827 19 1 2.9967 -8.4080 3.1835 20 1 4.0258 -7.4287 1.2182 21 6 6.4098 -5.9654 1.3323 22 6 6.6552 -4.4556 1.2751 23 6 4.3694 -2.4833 -0.0103 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 1.6525 2.1324 0.0004 28 1 4.1171 2.1325 0.0008 29 1 5.3436 0.0017 -0.0033 30 1 1.0162 -2.6668 1.0063 31 1 0.5739 -2.4003 -0.6962 32 1 2.5555 -3.5600 -1.4678 33 1 1.7783 -4.5940 -0.2398 34 1 4.8198 -4.9072 -0.6334 35 1 3.5599 -5.7115 0.3331 36 1 3.4645 -6.6246 5.2575 37 1 6.7384 -6.4955 2.2262 38 1 6.4878 -6.5236 0.3993 39 1 6.8945 -4.0211 0.3044 40 1 7.1452 -3.9920 2.1314 41 1 5.2070 -2.3902 0.6811 42 1 4.7508 -2.6647 -1.0151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878055666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:18 Heat of formation + Delta-G solvation = 36.053678 kcal Electronic energy + Delta-G solvation = -21147.475988 eV Core-core repulsion = 18285.021676 eV Total energy + Delta-G solvation = -2862.454312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14298 -39.23373 -37.24837 -34.60233 -34.09779 -32.73455 -30.86333 -28.40273 -27.55689 -27.11848 -24.91645 -23.84045 -23.21947 -21.64995 -20.72288 -20.36380 -18.20496 -17.26046 -17.06613 -16.48157 -16.43619 -15.83752 -15.48966 -15.19227 -14.81665 -14.78353 -14.63059 -14.15392 -13.85516 -13.77628 -13.54478 -13.24645 -13.04602 -13.01282 -12.79228 -12.47517 -12.24282 -12.13946 -12.10900 -11.95348 -11.64816 -11.39856 -11.34657 -10.77241 -10.52538 -10.19318 -9.47226 -9.37119 -8.94106 -8.17254 -6.17848 0.49622 0.53699 1.38401 1.40673 1.52833 2.44676 2.84333 2.94672 3.16771 3.40879 3.80071 3.85043 4.04881 4.16162 4.19643 4.22028 4.34714 4.39111 4.44857 4.48849 4.53191 4.56805 4.61959 4.66287 4.79974 4.81957 4.86074 4.88576 4.92617 4.95459 5.05612 5.10273 5.14249 5.29905 5.39290 5.42810 5.52618 5.63317 5.70336 5.79614 5.82578 6.18799 6.33437 6.37121 6.52929 6.87675 7.46810 9.00018 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.005654 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.874748 B = 4950.762085 C = 5339.556655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.124 4.124 5 C -0.137 4.137 6 C -0.090 4.090 7 C -0.088 4.088 8 C -0.071 4.071 9 C 0.051 3.949 10 N -0.533 5.533 11 C 0.101 3.899 12 C -0.014 4.014 13 C -0.445 4.445 14 H 0.023 0.977 15 C 0.012 3.988 16 N -0.959 5.959 17 Si 0.940 3.060 18 H -0.275 1.275 19 H -0.303 1.303 20 H -0.232 1.232 21 C -0.197 4.197 22 C -0.168 4.168 23 C 0.104 3.896 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 10.035 -15.618 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.091 4.091 7 C -0.088 4.088 8 C -0.107 4.107 9 C -0.077 4.077 10 N -0.257 5.257 11 C -0.027 4.027 12 C -0.015 4.015 13 C -0.483 4.483 14 H 0.041 0.959 15 C -0.183 4.183 16 N -0.600 5.600 17 Si 0.765 3.235 18 H -0.201 1.201 19 H -0.230 1.230 20 H -0.155 1.155 21 C -0.234 4.234 22 C -0.205 4.205 23 C -0.024 4.024 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.609 10.004 -14.991 18.381 hybrid contribution 0.369 -1.012 -0.114 1.083 sum -3.240 8.993 -15.105 17.875 Atomic orbital electron populations 1.20872 0.89607 1.03812 1.02689 1.20180 0.97429 0.92338 0.99982 1.21270 0.94492 0.97940 1.01201 1.21311 0.94740 0.98098 1.00030 1.21225 1.00455 0.92040 1.01815 1.19831 0.93852 0.95006 1.00366 1.19653 0.93046 0.95443 1.00652 1.20563 0.97350 0.90744 1.02090 1.22226 0.91510 0.99215 0.94754 1.61919 1.06278 1.02837 1.54659 1.21753 0.95570 0.90575 0.94785 1.19326 0.86956 1.00884 0.94313 1.20181 1.37253 0.92573 0.98284 0.95897 1.25774 0.94957 1.02808 0.94756 1.70083 1.47218 1.31174 1.11561 0.85896 0.76829 0.79428 0.81311 1.20105 1.23038 1.15483 1.23000 1.05796 0.92994 1.01641 1.22857 1.01092 0.95285 1.01290 1.20873 0.95050 0.88075 0.98385 0.91230 0.89880 0.90668 0.83788 0.83750 0.85381 0.91710 0.88008 0.93912 0.90600 0.94553 0.92108 0.93126 0.91144 0.88006 0.88149 0.91071 0.90737 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.55 71.23 0.68 -1.51 16 2 C -0.10 -2.56 5.88 -19.81 -0.12 -2.68 16 3 C -0.13 -3.05 9.69 22.23 0.22 -2.83 16 4 C -0.12 -2.96 10.05 22.22 0.22 -2.74 16 5 C -0.14 -3.87 9.65 22.34 0.22 -3.65 16 6 C -0.09 -2.94 5.79 -19.87 -0.12 -3.06 16 7 C -0.09 -2.70 5.77 -19.85 -0.11 -2.81 16 8 C -0.07 -2.07 5.23 29.82 0.16 -1.91 16 9 C 0.05 1.60 5.57 86.22 0.48 2.08 16 10 N -0.53 -20.59 4.30 -901.16 -3.87 -24.46 16 11 C 0.10 3.97 4.70 86.30 0.41 4.38 16 12 C -0.01 -0.61 0.71 -52.93 -0.04 -0.65 16 13 C -0.44 -25.63 9.11 25.60 0.23 -25.39 16 14 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 15 C 0.01 0.72 5.46 84.66 0.46 1.18 16 16 N -0.96 -61.70 13.96 21.45 0.30 -61.40 16 17 Si 0.94 45.09 24.94 68.60 1.71 46.80 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 20 H -0.23 -9.91 5.59 99.48 0.56 -9.35 16 21 C -0.20 -7.92 7.63 30.62 0.23 -7.69 16 22 C -0.17 -6.57 8.65 30.62 0.26 -6.31 16 23 C 0.10 3.59 4.94 85.59 0.42 4.01 16 24 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 26 H 0.07 1.33 6.04 -2.39 -0.01 1.32 16 27 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.10 2.29 6.42 -2.39 -0.02 2.28 16 32 H 0.04 1.20 8.05 -2.39 -0.02 1.19 16 33 H 0.08 2.36 7.74 -2.38 -0.02 2.34 16 34 H 0.04 1.24 7.83 -2.39 -0.02 1.22 16 35 H 0.06 2.48 6.03 -2.39 -0.01 2.46 16 36 H 0.26 15.79 8.31 -92.70 -0.77 15.01 16 37 H 0.07 3.09 7.15 -2.39 -0.02 3.07 16 38 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 40 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 41 H 0.07 2.82 6.71 -2.38 -0.02 2.80 16 42 H 0.05 1.44 7.98 -2.39 -0.02 1.42 16 Total: -1.00 -69.58 324.66 2.58 -67.00 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.84 Total: 21.64 kcal Atomic # 6 Polarization: -53.18 SS G_CDS: 3.61 Total: -49.57 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.57 Total: -85.87 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.71 Total: 46.80 kcal Total: -69.58 2.58 -67.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878055666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.050 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds