Wall clock time and date at job start Mon Mar 30 2020 01:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47352 * 269.99895 * 3 2 1 5 5 H 1.48502 * 109.47437 * 30.00084 * 3 2 1 6 6 H 1.48499 * 109.47168 * 149.99874 * 3 2 1 7 7 C 1.37880 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99409 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.53007 * 115.54739 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.46917 * 34.41612 * 10 9 7 12 12 C 1.47967 * 111.00177 * 268.47035 * 11 10 9 13 13 C 1.53934 * 86.18229 * 222.42116 * 12 11 10 14 14 C 1.48193 * 111.06841 * 169.04284 * 11 10 9 15 15 H 1.09000 * 113.75997 * 23.23547 * 14 11 10 16 16 C 1.53000 * 113.82372 * 251.80888 * 14 11 10 17 17 C 1.50702 * 109.47003 * 68.99678 * 16 14 11 18 18 C 1.38240 * 119.99795 * 269.72520 * 17 16 14 19 19 C 1.38239 * 119.99694 * 179.79025 * 18 17 16 20 20 C 1.38235 * 119.99843 * 0.43746 * 19 18 17 21 21 C 1.38229 * 120.00578 * 359.81898 * 20 19 18 22 22 C 1.38239 * 119.99815 * 359.97386 * 21 20 19 23 23 C 1.53004 * 117.50068 * 325.66951 * 9 7 2 24 24 C 1.53000 * 117.49983 * 34.33170 * 9 7 2 25 25 H 0.97001 * 119.99725 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46884 * 274.41553 * 10 9 7 27 27 H 1.08995 * 109.47029 * 154.41967 * 10 9 7 28 28 H 1.09001 * 113.75575 * 108.09971 * 12 11 10 29 29 H 1.08994 * 113.85516 * 336.75365 * 12 11 10 30 30 H 1.09002 * 113.73279 * 138.08098 * 13 12 11 31 31 H 1.09002 * 113.73078 * 269.25797 * 13 12 11 32 32 H 1.08994 * 109.47384 * 188.99467 * 16 14 11 33 33 H 1.08998 * 109.47616 * 308.99790 * 16 14 11 34 34 H 1.07996 * 120.00343 * 0.02562 * 18 17 16 35 35 H 1.07994 * 120.00157 * 180.27696 * 19 18 17 36 36 H 1.08001 * 119.99725 * 179.83300 * 20 19 18 37 37 H 1.07997 * 120.00630 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.00190 * 180.02562 * 22 21 20 39 39 H 1.09000 * 117.49766 * 215.00068 * 23 9 7 40 40 H 1.08994 * 117.49681 * 0.02988 * 23 9 7 41 41 H 1.08994 * 117.49987 * 359.97438 * 24 9 7 42 42 H 1.09003 * 117.49202 * 144.97239 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.1165 -3.7609 -0.0005 11 7 3.3356 -3.5183 0.7822 12 6 4.4306 -3.0236 -0.0813 13 6 5.3453 -3.9780 0.7075 14 6 4.0715 -4.7811 1.0272 15 1 3.8527 -5.5647 0.3018 16 6 3.9975 -5.2685 2.4756 17 6 2.5925 -5.7190 2.7828 18 6 1.6729 -4.8188 3.2878 19 6 0.3830 -5.2310 3.5655 20 6 0.0153 -6.5455 3.3467 21 6 0.9363 -7.4469 2.8468 22 6 2.2250 -7.0337 2.5650 23 6 -0.0726 -2.5507 0.7654 24 6 -0.0731 -2.5504 -0.7654 25 1 -0.4850 0.8401 -0.0004 26 1 2.3872 -4.0157 -1.0251 27 1 1.5577 -4.5848 0.4432 28 1 4.6642 -1.9692 0.0665 29 1 4.3185 -3.2910 -1.1319 30 1 6.0588 -4.5170 0.0841 31 1 5.8065 -3.5203 1.5826 32 1 4.6849 -6.1029 2.6137 33 1 4.2733 -4.4555 3.1472 34 1 1.9611 -3.7927 3.4618 35 1 -0.3367 -4.5268 3.9558 36 1 -0.9918 -6.8682 3.5663 37 1 0.6491 -8.4739 2.6762 38 1 2.9445 -7.7378 2.1740 39 1 -0.3267 -3.4835 1.2687 40 1 -0.3985 -1.6406 1.2688 41 1 -0.3994 -1.6401 -1.2683 42 1 -0.3274 -3.4829 -1.2694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878177356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:47 Heat of formation + Delta-G solvation = 92.134181 kcal Electronic energy + Delta-G solvation = -21414.312815 eV Core-core repulsion = 18554.290336 eV Total energy + Delta-G solvation = -2860.022479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.79520 -38.46506 -36.14825 -32.65435 -31.55159 -30.53290 -29.43643 -27.61435 -25.61258 -23.54119 -23.36738 -22.22792 -20.78059 -20.53966 -19.06129 -18.75454 -16.47396 -16.15277 -15.37604 -14.99181 -14.82794 -14.62735 -14.44927 -13.74611 -13.32374 -13.09477 -12.80831 -12.62252 -12.32561 -12.27952 -11.48205 -11.39478 -11.21652 -11.09802 -10.98221 -10.78839 -10.61221 -10.50429 -10.29226 -10.12749 -9.84778 -9.76570 -9.29735 -8.66095 -8.55788 -8.35816 -8.17519 -7.96147 -7.77528 -5.82521 -3.84671 1.68562 1.76325 3.33589 3.41035 3.43757 4.12269 4.44177 4.49172 4.87355 5.13938 5.15292 5.23588 5.28354 5.35369 5.47774 5.59106 5.68540 5.81140 5.83599 5.87203 5.94332 5.98402 6.11374 6.18363 6.22790 6.32943 6.42205 6.42487 6.45503 6.61517 6.70245 6.76211 6.89475 6.91640 7.01216 7.11402 7.20679 7.34461 7.36682 7.51489 7.78989 7.95673 8.18495 8.36642 8.68283 9.11552 9.68441 11.13963 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018466 B = 0.006779 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.963551 B = 4129.285281 C = 5017.979049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.053 3.947 3 Si 0.890 3.110 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.070 0.930 9 C 0.032 3.968 10 C 0.071 3.929 11 N -0.440 5.440 12 C 0.015 3.985 13 C -0.146 4.146 14 C 0.025 3.975 15 H 0.067 0.933 16 C -0.058 4.058 17 C -0.074 4.074 18 C -0.086 4.086 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.180 4.180 24 C -0.197 4.197 25 H 0.255 0.745 26 H 0.022 0.978 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.039 0.961 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -11.970 4.492 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.088 0.912 9 C 0.032 3.968 10 C -0.057 4.057 11 N -0.162 5.162 12 C -0.114 4.114 13 C -0.184 4.184 14 C -0.084 4.084 15 H 0.085 0.915 16 C -0.096 4.096 17 C -0.074 4.074 18 C -0.104 4.104 19 C -0.133 4.133 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.218 4.218 24 C -0.236 4.236 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.757 -11.431 5.040 13.755 hybrid contribution 0.184 0.389 -0.911 1.008 sum 5.941 -11.042 4.129 13.201 Atomic orbital electron populations 1.70038 1.05704 1.25491 1.51121 1.25025 0.94887 0.98990 0.95834 0.86621 0.79896 0.83820 0.77782 1.21062 1.21506 1.19953 1.20776 0.93156 0.88402 1.47026 0.91186 1.18807 0.85483 0.92247 1.00304 1.22125 0.92165 0.97745 0.93691 1.68539 1.01034 1.12868 1.33721 1.23811 0.91625 1.00551 0.95404 1.23472 0.96076 0.98049 1.00782 1.23448 0.94968 0.94061 0.95966 0.91521 1.20448 0.92627 1.00454 0.96042 1.19824 0.96280 0.93185 0.98142 1.21164 0.92831 0.99577 0.96804 1.21175 0.96529 0.95672 0.99960 1.21060 0.99078 0.93958 1.00691 1.20988 0.93845 0.99167 1.00683 1.20960 0.96380 0.95650 1.01511 1.22771 1.05937 0.99333 0.93716 1.22844 1.06530 0.99293 0.94901 0.93496 0.95972 0.93008 0.89107 0.92083 0.92071 0.89559 0.91378 0.90297 0.85351 0.86338 0.86820 0.86888 0.86887 0.94266 0.87658 0.87411 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 8.59 55.43 0.48 -24.52 16 2 C 0.05 1.44 5.27 -17.82 -0.09 1.34 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.46 -12.24 8.57 -34.44 -0.30 -12.53 16 8 H 0.07 1.82 4.55 -52.49 -0.24 1.58 16 9 C 0.03 0.81 2.52 -155.66 -0.39 0.41 16 10 C 0.07 1.51 5.04 -3.82 -0.02 1.49 16 11 N -0.44 -8.29 5.41 -230.47 -1.25 -9.53 16 12 C 0.01 0.26 6.50 -2.76 -0.02 0.24 16 13 C -0.15 -2.00 7.84 -25.80 -0.20 -2.20 16 14 C 0.03 0.38 3.22 -66.52 -0.21 0.17 16 15 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 16 C -0.06 -0.79 5.40 -27.88 -0.15 -0.94 16 17 C -0.07 -1.11 4.64 -104.62 -0.48 -1.59 16 18 C -0.09 -1.41 9.51 -39.58 -0.38 -1.79 16 19 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 20 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 21 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 22 C -0.13 -1.73 9.70 -39.58 -0.38 -2.12 16 23 C -0.18 -4.58 9.31 -26.69 -0.25 -4.83 16 24 C -0.20 -5.07 9.39 -26.69 -0.25 -5.32 16 25 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.02 0.47 7.36 -51.93 -0.38 0.09 16 27 H 0.05 1.11 7.19 -51.93 -0.37 0.73 16 28 H 0.09 1.68 6.70 -51.93 -0.35 1.34 16 29 H 0.06 1.04 7.47 -51.93 -0.39 0.66 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 34 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.04 0.94 8.05 -51.93 -0.42 0.52 16 40 H 0.11 2.97 6.28 -51.93 -0.33 2.64 16 41 H 0.11 3.04 6.28 -51.93 -0.33 2.71 16 42 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -28.57 332.84 -11.66 -40.23 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.57 Total: 6.71 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: -4.32 Total: -34.19 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.77 Total: -34.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.57 -11.66 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878177356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.368 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds