Wall clock time and date at job start Mon Mar 30 2020 00:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.48650 * 111.00665 * 287.46101 * 11 10 9 13 13 C 1.55190 * 103.38391 * 200.93785 * 12 11 10 14 14 C 1.53436 * 102.63073 * 36.42795 * 13 12 11 15 15 C 1.54018 * 110.95558 * 99.81684 * 14 13 12 16 16 C 1.55395 * 100.27872 * 154.57958 * 15 14 13 17 17 C 1.51860 * 103.73246 * 326.41789 * 16 15 14 18 18 C 1.38229 * 130.76114 * 202.03204 * 17 16 15 19 19 C 1.38156 * 120.21719 * 180.02562 * 18 17 16 20 20 C 1.38251 * 119.91666 * 0.02562 * 19 18 17 21 21 C 1.38131 * 119.98972 * 359.97438 * 20 19 18 22 22 C 1.38334 * 120.26514 * 359.97182 * 21 20 19 23 23 C 1.48226 * 111.00237 * 170.00051 * 11 10 9 24 24 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.09005 * 110.63164 * 319.41332 * 12 11 10 30 30 H 1.08998 * 110.63671 * 82.45626 * 12 11 10 31 31 H 1.09003 * 110.77987 * 278.14575 * 13 12 11 32 32 H 1.09000 * 110.94377 * 154.78829 * 13 12 11 33 33 H 1.08993 * 111.24926 * 272.33882 * 15 14 13 34 34 H 1.09001 * 111.25043 * 36.82534 * 15 14 13 35 35 H 1.09005 * 110.57292 * 84.97998 * 16 15 14 36 36 H 1.08997 * 110.57651 * 207.70626 * 16 15 14 37 37 H 1.08003 * 119.88603 * 0.08004 * 18 17 16 38 38 H 1.07997 * 120.04057 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.00363 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.86788 * 180.02562 * 21 20 19 41 41 H 1.08997 * 110.03446 * 264.93701 * 23 11 10 42 42 H 1.09002 * 110.02884 * 26.31708 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0108 11 7 5.4905 -2.6364 -0.0176 12 6 6.0173 -2.2177 -1.3430 13 6 7.4624 -2.7834 -1.3504 14 6 7.3047 -4.1163 -0.6069 15 6 7.2253 -5.2933 -1.5971 16 6 7.7391 -6.4496 -0.6951 17 6 8.7609 -5.7778 0.2052 18 6 9.8212 -6.3056 0.9180 19 6 10.6254 -5.4809 1.6807 20 6 10.3692 -4.1233 1.7320 21 6 9.3104 -3.5932 1.0208 22 6 8.5035 -4.4155 0.2550 23 6 6.0229 -3.9996 0.2178 24 1 -0.4850 0.8400 -0.0004 25 1 3.8713 -0.6783 -0.8962 26 1 3.8786 -0.6819 0.8837 27 1 3.6619 -3.1521 0.8797 28 1 3.6545 -3.1485 -0.9003 29 1 5.4280 -2.6585 -2.1472 30 1 6.0296 -1.1309 -1.4256 31 1 8.1403 -2.1193 -0.8140 32 1 7.8111 -2.9482 -2.3698 33 1 6.1992 -5.4698 -1.9195 34 1 7.8839 -5.1361 -2.4512 35 1 6.9231 -6.8661 -0.1043 36 1 8.2088 -7.2264 -1.2985 37 1 10.0219 -7.3660 0.8778 38 1 11.4528 -5.8964 2.2368 39 1 10.9967 -3.4775 2.3281 40 1 9.1122 -2.5323 1.0619 41 1 6.2460 -4.1358 1.2760 42 1 5.2982 -4.7451 -0.1096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879995957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:04 Heat of formation + Delta-G solvation = 23.719246 kcal Electronic energy + Delta-G solvation = -20589.564605 eV Core-core repulsion = 17726.575432 eV Total energy + Delta-G solvation = -2862.989173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93082 -38.16325 -35.44376 -33.28611 -32.00309 -30.65565 -29.16754 -28.97701 -27.76842 -24.80369 -22.96700 -22.76820 -21.52500 -21.07580 -19.93863 -19.11632 -16.85425 -16.45169 -15.49598 -15.43314 -14.94022 -14.74731 -14.52156 -14.03762 -14.00965 -13.35509 -13.19715 -12.96658 -12.61129 -12.36495 -12.21657 -12.11806 -11.97192 -11.54319 -11.45460 -11.27245 -11.04350 -10.90951 -10.83828 -10.55241 -10.38311 -9.89915 -9.83129 -9.70623 -9.18788 -8.88483 -8.57114 -8.50841 -7.91387 -6.02450 -4.00466 1.26215 1.33002 3.33671 3.41147 3.47985 3.66793 4.21003 4.34208 4.48526 4.51501 4.70099 4.81697 4.91107 4.98258 5.02671 5.15584 5.32113 5.34800 5.38193 5.47045 5.48032 5.58168 5.70489 5.75160 5.85003 5.88939 5.93976 5.98820 6.04456 6.09670 6.18153 6.23011 6.32135 6.34664 6.40581 6.46480 6.62625 6.79253 6.92742 7.17418 7.24525 7.51725 7.64826 7.87111 8.55159 9.01564 9.60334 11.10973 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.032070 B = 0.003929 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.871208 B = 7124.395495 C = 7449.951812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.004 4.004 10 C 0.062 3.938 11 N -0.519 5.519 12 C 0.037 3.963 13 C -0.113 4.113 14 C -0.031 4.031 15 C -0.111 4.111 16 C -0.082 4.082 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.098 4.098 22 C -0.071 4.071 23 C 0.055 3.945 24 H 0.263 0.737 25 H 0.010 0.990 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.632 -11.843 -1.155 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.042 4.042 10 C -0.065 4.065 11 N -0.243 5.243 12 C -0.091 4.091 13 C -0.150 4.150 14 C -0.032 4.032 15 C -0.148 4.148 16 C -0.119 4.119 17 C -0.100 4.100 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.072 4.072 23 C -0.073 4.073 24 H 0.072 0.928 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.611 -11.372 -0.732 24.431 hybrid contribution 0.015 0.339 -0.523 0.623 sum 21.626 -11.033 -1.255 24.310 Atomic orbital electron populations 1.69919 1.06319 1.26891 1.51272 1.24995 0.94709 0.99184 0.94499 0.86763 0.80558 0.83470 0.78479 1.20382 1.21437 1.18715 1.21100 0.89499 0.94467 1.50889 0.91190 1.19505 0.96301 0.91655 0.96760 1.22299 0.83920 1.00473 0.99783 1.64961 1.10493 1.20642 1.28223 1.23270 0.93714 1.01191 0.90906 1.22503 0.97627 0.95205 0.99710 1.20388 0.92768 0.95967 0.94078 1.22729 1.01848 0.93409 0.96814 1.21362 0.96611 0.97634 0.96295 1.20833 0.96008 0.94892 0.98233 1.20524 0.95168 0.99556 0.97712 1.21012 0.99769 0.93825 0.99577 1.21032 0.97910 0.95333 0.99783 1.20631 0.94600 0.99973 0.96348 1.20348 0.95657 0.93777 0.97371 1.22707 0.93279 0.91401 0.99904 0.92758 0.97178 0.95768 0.91609 0.95340 0.93731 0.90038 0.90711 0.91106 0.90285 0.90620 0.90021 0.90923 0.86571 0.86178 0.86051 0.85988 0.90695 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.15 27.46 -169.99 -4.67 17.49 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.44 6.55 56.52 0.37 -6.07 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 -0.11 4.13 -27.88 -0.12 -0.22 16 10 C 0.06 1.29 4.65 -3.83 -0.02 1.28 16 11 N -0.52 -9.17 5.26 -230.62 -1.21 -10.38 16 12 C 0.04 0.58 5.92 -1.69 -0.01 0.57 16 13 C -0.11 -1.42 6.21 -25.35 -0.16 -1.58 16 14 C -0.03 -0.39 0.69 -155.00 -0.11 -0.50 16 15 C -0.11 -1.16 5.97 -24.93 -0.15 -1.31 16 16 C -0.08 -0.80 6.72 -26.04 -0.17 -0.97 16 17 C -0.10 -1.12 6.14 -103.87 -0.64 -1.76 16 18 C -0.11 -1.13 10.03 -39.61 -0.40 -1.53 16 19 C -0.12 -1.20 10.05 -39.61 -0.40 -1.60 16 20 C -0.12 -1.27 10.04 -39.62 -0.40 -1.66 16 21 C -0.10 -1.16 9.49 -39.59 -0.38 -1.53 16 22 C -0.07 -0.88 4.86 -104.43 -0.51 -1.39 16 23 C 0.06 0.82 5.92 -3.16 -0.02 0.80 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.01 0.24 6.81 -51.93 -0.35 -0.11 16 26 H 0.02 0.61 7.21 -51.93 -0.37 0.24 16 27 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 28 H 0.03 0.59 7.83 -51.93 -0.41 0.18 16 29 H 0.04 0.69 7.80 -51.93 -0.41 0.29 16 30 H 0.08 1.32 7.83 -51.93 -0.41 0.92 16 31 H 0.07 0.94 6.87 -51.93 -0.36 0.58 16 32 H 0.07 0.78 7.59 -51.93 -0.39 0.38 16 33 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 34 H 0.08 0.73 7.76 -51.93 -0.40 0.33 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.41 7.43 -52.49 -0.39 1.02 16 41 H 0.07 1.15 7.74 -51.93 -0.40 0.75 16 42 H 0.05 0.68 7.08 -51.93 -0.37 0.31 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -31.39 327.84 -10.84 -42.23 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.78 Total: -1.85 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -3.90 Total: -24.96 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.44 Total: -37.86 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.39 -10.84 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879995957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.952 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds