Wall clock time and date at job start Mon Mar 30 2020 01:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48507 * 109.46964 * 239.99566 * 3 2 1 5 5 H 1.48497 * 109.47529 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47134 * 119.99621 * 3 2 1 7 7 C 1.39866 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99985 * 197.95739 * 7 2 1 9 9 C 1.41141 * 119.99888 * 17.96864 * 7 2 1 10 10 C 1.40885 * 120.15248 * 204.61068 * 9 7 2 11 11 C 1.36336 * 119.83841 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.15760 * 359.97438 * 11 10 9 13 13 N 1.38860 * 119.83961 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99806 * 179.97438 * 13 12 11 15 15 C 1.55926 * 110.22930 * 87.48308 * 14 13 12 16 16 C 1.49973 * 104.08143 * 125.71193 * 15 14 13 17 17 H 1.08997 * 107.81044 * 78.51628 * 16 15 14 18 18 C 1.50213 * 128.12745 * 209.02559 * 16 15 14 19 19 C 1.55916 * 104.81429 * 149.23137 * 18 16 15 20 20 C 1.56250 * 105.86878 * 354.50162 * 19 18 16 21 21 C 1.51729 * 101.92066 * 334.74964 * 20 19 18 22 22 H 1.08992 * 110.89531 * 287.16024 * 21 20 19 23 23 C 1.51736 * 122.52338 * 153.03987 * 21 20 19 24 24 C 1.39564 * 120.31798 * 0.25892 * 12 11 10 25 25 C 1.36347 * 120.15802 * 359.48489 * 24 12 11 26 26 H 0.97002 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.08267 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.92110 * 179.97438 * 11 10 9 29 29 H 0.96993 * 120.00586 * 0.02562 * 13 12 11 30 30 H 1.08994 * 110.15098 * 325.70528 * 14 13 12 31 31 H 1.08991 * 110.50345 * 244.35979 * 15 14 13 32 32 H 1.08999 * 110.50667 * 7.06394 * 15 14 13 33 33 H 1.08997 * 109.23933 * 30.79903 * 18 16 15 34 34 H 1.09004 * 111.06576 * 268.58694 * 18 16 15 35 35 H 1.08997 * 110.16933 * 235.40141 * 19 18 16 36 36 H 1.09004 * 110.17143 * 113.60000 * 19 18 16 37 37 H 1.08996 * 110.93612 * 216.59485 * 20 19 18 38 38 H 1.09000 * 110.93950 * 92.91229 * 20 19 18 39 39 H 1.08992 * 110.94141 * 87.56117 * 23 21 20 40 40 H 1.09000 * 110.94102 * 323.87502 * 23 21 20 41 41 H 1.08001 * 119.92164 * 179.72020 * 24 12 11 42 42 H 1.07997 * 120.07883 * 180.27377 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0969 1.6963 -1.2125 5 1 1.2782 2.7465 -0.0006 6 1 3.0967 1.6964 1.2126 7 6 2.0083 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2889 9 6 1.3542 -2.4039 -0.3760 10 6 1.8264 -3.6472 0.0889 11 6 1.1899 -4.7953 -0.2793 12 6 0.0728 -4.7409 -1.1142 13 7 -0.5700 -5.9144 -1.4855 14 6 -1.7433 -5.8613 -2.3613 15 6 -1.3014 -5.8835 -3.8565 16 6 -2.0658 -7.0313 -4.4459 17 1 -3.0861 -6.6939 -4.6280 18 6 -1.6740 -7.9126 -5.5975 19 6 -2.3252 -9.2937 -5.2821 20 6 -2.9536 -9.1546 -3.8583 21 6 -2.1069 -8.0532 -3.2483 22 1 -1.1090 -8.4187 -3.0065 23 6 -2.6257 -7.1346 -2.1576 24 6 -0.3976 -3.5133 -1.5825 25 6 0.2258 -2.3567 -1.2182 26 1 -0.4850 0.8401 -0.0004 27 1 2.6910 -3.6908 0.7347 28 1 1.5511 -5.7491 0.0760 29 1 -0.2428 -6.7692 -1.1644 30 1 -2.3257 -4.9635 -2.1548 31 1 -1.5740 -4.9502 -4.3489 32 1 -0.2285 -6.0587 -3.9350 33 1 -0.5881 -8.0007 -5.6291 34 1 -2.0536 -7.5177 -6.5399 35 1 -1.5662 -10.0760 -5.2831 36 1 -3.1001 -9.5199 -6.0145 37 1 -2.8510 -10.0820 -3.2950 38 1 -3.9990 -8.8526 -3.9217 39 1 -2.4612 -7.5690 -1.1716 40 1 -3.6805 -6.9060 -2.3099 41 1 -1.2599 -3.4790 -2.2319 42 1 -0.1420 -1.4071 -1.5778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893576350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:34 Heat of formation + Delta-G solvation = 11.794643 kcal Electronic energy + Delta-G solvation = -20323.745712 eV Core-core repulsion = 17460.239449 eV Total energy + Delta-G solvation = -2863.506263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14577 -37.77568 -35.36006 -33.45726 -31.69427 -30.28385 -29.41537 -28.42669 -25.96951 -25.90286 -24.03929 -21.50838 -20.62794 -20.24517 -19.61572 -19.17626 -17.17818 -16.37268 -15.55950 -15.10917 -14.86217 -14.73402 -14.50808 -13.90336 -13.64735 -12.91982 -12.71646 -12.51683 -12.27595 -12.04735 -11.74122 -11.61636 -11.46082 -11.35464 -11.15148 -10.99553 -10.95141 -10.76164 -10.64633 -10.44564 -10.24920 -10.19927 -9.95850 -9.67572 -9.24153 -9.15756 -8.49901 -7.45344 -6.61029 -6.34294 -3.99967 2.95683 3.13693 3.16045 3.19293 3.38832 4.07626 4.08070 4.34891 4.63078 4.65942 4.79790 5.07947 5.12211 5.17406 5.23877 5.43847 5.61674 5.63412 5.68757 5.73555 5.77427 5.83152 5.87324 5.95344 6.05255 6.11099 6.19390 6.29707 6.31991 6.36494 6.41725 6.42684 6.60199 6.97426 7.01174 7.23811 7.39201 7.61098 7.72917 7.88627 8.18532 8.33957 8.54775 8.75346 8.84804 9.09306 9.19163 10.40424 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.040265 B = 0.003525 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.223918 B = 7942.432413 C = 8158.377842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.071 0.929 9 C 0.074 3.926 10 C -0.187 4.187 11 C -0.160 4.160 12 C 0.094 3.906 13 N -0.752 5.752 14 C 0.163 3.837 15 C -0.121 4.121 16 C -0.109 4.109 17 H 0.059 0.941 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.110 4.110 22 H 0.076 0.924 23 C -0.117 4.117 24 C -0.163 4.163 25 C -0.124 4.124 26 H 0.276 0.724 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.382 0.618 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -13.299 -8.050 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.182 4.182 12 C -0.003 4.003 13 N -0.386 5.386 14 C 0.055 3.945 15 C -0.160 4.160 16 C -0.128 4.128 17 H 0.077 0.923 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.128 4.128 22 H 0.095 0.905 23 C -0.155 4.155 24 C -0.185 4.185 25 C -0.144 4.144 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.215 0.785 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.411 -13.018 -8.123 16.630 hybrid contribution 0.457 0.520 0.143 0.707 sum -5.954 -12.497 -7.980 15.979 Atomic orbital electron populations 1.69852 1.07342 1.28652 1.37712 1.25785 0.94648 1.00830 0.92749 0.86472 0.80136 0.80901 0.79713 1.19113 1.20608 1.19297 1.19334 0.97893 0.91419 1.41302 0.91041 1.17479 0.92489 0.91946 0.90951 1.20534 1.02687 0.92650 1.04875 1.19802 0.97965 0.96995 1.03470 1.17354 0.95648 0.85754 1.01548 1.43948 1.32523 1.05657 1.56432 1.21998 0.86972 0.97113 0.88414 1.22051 1.00711 0.96860 0.96426 1.21607 1.00670 0.95560 0.94966 0.92287 1.21465 1.00677 0.94786 0.97555 1.22891 0.99467 0.97046 0.96483 1.21934 0.98995 0.98292 0.95629 1.22366 0.99838 0.94900 0.95738 0.90524 1.22248 0.99243 0.95564 0.98471 1.20115 1.01497 0.91915 1.04990 1.20936 0.98186 0.96443 0.98867 0.91317 0.89158 0.89710 0.78490 0.90691 0.91922 0.91084 0.91981 0.91945 0.91884 0.92039 0.91920 0.91590 0.91305 0.90955 0.89346 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 10.96 55.54 0.61 -21.07 16 2 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 3 Si 0.90 19.45 29.60 -169.99 -5.03 14.41 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.47 -12.88 9.03 -37.87 -0.34 -13.23 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.07 2.03 5.57 -106.79 -0.60 1.44 16 10 C -0.19 -4.70 9.74 -39.27 -0.38 -5.08 16 11 C -0.16 -3.64 9.82 -39.77 -0.39 -4.03 16 12 C 0.09 2.05 6.67 -83.69 -0.56 1.49 16 13 N -0.75 -13.00 5.18 -48.86 -0.25 -13.26 16 14 C 0.16 2.42 2.96 -64.62 -0.19 2.23 16 15 C -0.12 -1.69 6.51 -26.67 -0.17 -1.87 16 16 C -0.11 -1.25 2.55 -91.07 -0.23 -1.48 16 17 H 0.06 0.67 8.02 -51.93 -0.42 0.26 16 18 C -0.11 -1.08 6.71 -26.56 -0.18 -1.26 16 19 C -0.12 -1.06 6.95 -23.43 -0.16 -1.22 16 20 C -0.11 -1.02 6.67 -25.63 -0.17 -1.19 16 21 C -0.11 -1.20 2.93 -89.46 -0.26 -1.46 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.12 -1.40 6.20 -25.63 -0.16 -1.55 16 24 C -0.16 -3.84 9.13 -39.77 -0.36 -4.21 16 25 C -0.12 -3.29 8.64 -39.26 -0.34 -3.63 16 26 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 27 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 28 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.38 5.99 8.61 -40.82 -0.35 5.64 16 30 H 0.08 1.24 6.46 -51.93 -0.34 0.90 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.11 7.98 -51.93 -0.41 0.69 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.91 6.21 -52.49 -0.33 1.58 16 42 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -27.68 329.37 -11.09 -38.77 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.79 Total: 9.37 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: -4.59 Total: -33.18 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.36 Total: -34.33 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.68 -11.09 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893576350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.560 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds