Wall clock time and date at job start Mon Mar 30 2020 00:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00363 * 2 1 4 4 H 1.48505 * 109.47247 * 90.00112 * 3 2 1 5 5 H 1.48495 * 109.47491 * 210.00092 * 3 2 1 6 6 H 1.48506 * 109.47271 * 330.00371 * 3 2 1 7 7 C 1.37880 * 119.99679 * 180.27896 * 2 1 3 8 8 H 1.08001 * 120.00029 * 185.15351 * 7 2 1 9 9 C 1.50696 * 119.99939 * 5.15097 * 7 2 1 10 10 C 1.53000 * 115.55050 * 279.43388 * 9 7 2 11 11 N 1.46900 * 109.47145 * 294.89846 * 10 9 7 12 12 C 1.46902 * 111.00109 * 184.73214 * 11 10 9 13 13 C 1.53002 * 109.47126 * 180.02562 * 12 11 10 14 14 H 1.08996 * 110.26523 * 52.92589 * 13 12 11 15 15 C 1.54350 * 110.30038 * 174.99789 * 13 12 11 16 16 C 1.54347 * 102.38870 * 92.57395 * 15 13 12 17 17 C 1.51368 * 105.17230 * 26.34941 * 16 15 13 18 18 C 1.38496 * 130.39653 * 162.81174 * 17 16 15 19 19 C 1.38099 * 120.21988 * 179.97438 * 18 17 16 20 20 C 1.38262 * 119.93285 * 0.02562 * 19 18 17 21 21 C 1.38106 * 119.93366 * 359.97438 * 20 19 18 22 22 C 1.38227 * 109.75474 * 342.80622 * 17 16 15 23 23 C 1.53005 * 117.49810 * 133.72917 * 9 7 2 24 24 C 1.53005 * 117.50000 * 65.10438 * 9 7 2 25 25 H 0.96993 * 120.00233 * 175.00256 * 1 2 3 26 26 H 1.09001 * 109.46991 * 54.90400 * 10 9 7 27 27 H 1.09001 * 109.47183 * 174.89714 * 10 9 7 28 28 H 1.00900 * 110.99956 * 308.68192 * 11 10 9 29 29 H 1.09001 * 109.46643 * 300.00119 * 12 11 10 30 30 H 1.09000 * 109.47274 * 59.99827 * 12 11 10 31 31 H 1.08999 * 110.82029 * 210.79838 * 15 13 12 32 32 H 1.08999 * 110.82209 * 334.15270 * 15 13 12 33 33 H 1.09000 * 110.29895 * 145.27230 * 16 15 13 34 34 H 1.08996 * 110.30672 * 267.42114 * 16 15 13 35 35 H 1.08001 * 119.88914 * 359.97186 * 18 17 16 36 36 H 1.07993 * 120.03625 * 179.97438 * 19 18 17 37 37 H 1.07993 * 120.03207 * 180.02562 * 20 19 18 38 38 H 1.07994 * 119.89210 * 179.97438 * 21 20 19 39 39 H 1.08993 * 117.49757 * 359.97438 * 23 9 7 40 40 H 1.09000 * 117.49961 * 145.02673 * 23 9 7 41 41 H 1.08994 * 117.49810 * 214.97662 * 24 9 7 42 42 H 1.08996 * 117.49636 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0058 8 1 3.0812 -1.1965 0.0782 9 6 1.2555 -2.4959 -0.1293 10 6 0.6261 -3.0203 1.1629 11 7 1.6862 -3.3568 2.1225 12 6 1.1247 -3.9689 3.3341 13 6 2.2564 -4.3040 4.3076 14 1 2.8737 -3.4237 4.4864 15 6 1.6794 -4.8328 5.6380 16 6 1.6653 -6.3592 5.4094 17 6 2.7596 -6.6182 4.3962 18 6 3.4069 -7.7941 4.0551 19 6 4.3896 -7.7903 3.0848 20 6 4.7294 -6.6090 2.4516 21 6 4.0850 -5.4354 2.7904 22 6 3.0992 -5.4373 3.7631 23 6 1.7914 -3.5277 -1.1239 24 6 0.5063 -2.7586 -1.4373 25 1 -0.4850 -0.8368 -0.0732 26 1 -0.0202 -2.2532 1.5895 27 1 0.0372 -3.9112 0.9447 28 1 2.3780 -3.9582 1.7009 29 1 0.4338 -3.2709 3.8070 30 1 0.5926 -4.8818 3.0668 31 1 2.3296 -4.5721 6.4731 32 1 0.6709 -4.4530 5.8010 33 1 1.8804 -6.8830 6.3407 34 1 0.7000 -6.6732 5.0122 35 1 3.1424 -8.7170 4.5495 36 1 4.8928 -8.7088 2.8214 37 1 5.4973 -6.6043 1.6923 38 1 4.3513 -4.5131 2.2957 39 1 2.6854 -3.2647 -1.6892 40 1 1.6956 -4.5803 -0.8578 41 1 -0.4347 -3.3053 -1.3772 42 1 0.5548 -1.9896 -2.2082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894197233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:44 Heat of formation + Delta-G solvation = 35.217559 kcal Electronic energy + Delta-G solvation = -20696.914167 eV Core-core repulsion = 17834.423598 eV Total energy + Delta-G solvation = -2862.490569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.25929 -37.32942 -36.14947 -33.95121 -31.76878 -31.19249 -29.14187 -28.16855 -25.42114 -24.49686 -22.80724 -22.50853 -21.18402 -20.80299 -20.04291 -19.15252 -16.64544 -16.28336 -15.70372 -15.16484 -15.02457 -14.61168 -13.93577 -13.70625 -13.66049 -13.32265 -13.09329 -12.95683 -12.61761 -12.24318 -12.13520 -11.91620 -11.63435 -11.27480 -11.07207 -10.95835 -10.75022 -10.68859 -10.59313 -10.42413 -10.38972 -10.04998 -9.44507 -8.75286 -8.47693 -8.45477 -8.37917 -8.18785 -7.56481 -6.21823 -3.91836 1.40708 1.45298 3.50475 3.53580 3.68851 3.81021 4.37754 4.54647 4.60988 4.76615 5.00100 5.04648 5.08393 5.15423 5.24257 5.45499 5.48491 5.54370 5.56671 5.62561 5.69168 5.81571 5.91114 5.98017 6.01174 6.06791 6.13099 6.19947 6.26194 6.33379 6.39336 6.43529 6.51067 6.58060 6.60043 6.72142 6.78216 6.91291 7.07078 7.27453 7.37616 7.89333 8.13423 8.41696 8.56121 9.00922 9.79968 11.17944 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.004822 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.568833 B = 5805.068638 C = 6137.392370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.029 3.971 10 C 0.102 3.898 11 N -0.666 5.666 12 C 0.072 3.928 13 C -0.051 4.051 14 H 0.092 0.908 15 C -0.115 4.115 16 C -0.080 4.080 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.082 4.082 23 C -0.200 4.200 24 C -0.183 4.183 25 H 0.272 0.728 26 H 0.070 0.930 27 H -0.006 1.006 28 H 0.333 0.667 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -13.871 9.349 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.898 3.102 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.027 4.027 11 N -0.297 5.297 12 C -0.058 4.058 13 C -0.070 4.070 14 H 0.110 0.890 15 C -0.153 4.153 16 C -0.117 4.117 17 C -0.102 4.102 18 C -0.132 4.132 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.120 4.120 22 C -0.082 4.082 23 C -0.237 4.237 24 C -0.222 4.222 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.012 0.988 28 H 0.152 0.848 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.735 -11.573 9.684 15.816 hybrid contribution -0.047 -2.736 -0.566 2.795 sum 4.688 -14.310 9.118 17.603 Atomic orbital electron populations 1.70699 1.06782 1.31271 1.46181 1.25677 0.96564 1.02077 0.93656 0.83545 0.74624 0.75336 0.76660 1.21569 1.21672 1.21319 1.21136 0.93730 0.89328 1.54257 0.93074 1.19162 0.97498 0.95014 0.85543 1.21602 0.91928 0.96077 0.93043 1.60338 1.15341 1.47449 1.06559 1.21901 0.95050 0.96598 0.92206 1.20761 0.95840 0.96452 0.93946 0.89025 1.22321 1.01729 0.94326 0.96910 1.21039 0.96755 0.96812 0.97141 1.20637 0.97563 0.93601 0.98363 1.20554 0.97086 0.96939 0.98577 1.20989 0.98194 0.98051 0.97122 1.21068 1.00215 0.92566 1.00040 1.20847 0.95533 0.98755 0.96827 1.20619 0.95973 0.95466 0.96152 1.22828 0.97676 0.95319 1.07916 1.22792 0.93327 1.02603 1.03441 0.91691 0.91121 0.98798 0.84839 0.90945 0.96432 0.90874 0.90335 0.91024 0.90486 0.86716 0.86268 0.85987 0.85409 0.90206 0.92029 0.91840 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.14 13.61 55.43 0.75 -26.39 16 2 C 0.02 0.69 5.42 -17.82 -0.10 0.60 16 3 Si 1.07 25.48 29.91 -169.99 -5.08 20.40 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.55 -15.16 8.72 -34.44 -0.30 -15.46 16 8 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.71 0.97 -155.66 -0.15 0.55 16 10 C 0.10 2.33 5.40 -3.82 -0.02 2.31 16 11 N -0.67 -13.45 6.44 -113.78 -0.73 -14.18 16 12 C 0.07 1.20 5.06 -3.82 -0.02 1.18 16 13 C -0.05 -0.73 3.11 -90.74 -0.28 -1.01 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 15 C -0.11 -1.29 6.60 -25.32 -0.17 -1.45 16 16 C -0.08 -0.87 6.76 -26.85 -0.18 -1.05 16 17 C -0.10 -1.31 6.14 -104.20 -0.64 -1.95 16 18 C -0.11 -1.34 10.04 -39.54 -0.40 -1.74 16 19 C -0.13 -1.45 10.05 -39.62 -0.40 -1.85 16 20 C -0.12 -1.52 10.05 -39.62 -0.40 -1.92 16 21 C -0.10 -1.46 8.89 -39.53 -0.35 -1.81 16 22 C -0.08 -1.17 5.14 -104.21 -0.54 -1.71 16 23 C -0.20 -4.41 9.96 -26.72 -0.27 -4.68 16 24 C -0.18 -4.30 8.96 -26.72 -0.24 -4.54 16 25 H 0.27 8.02 6.08 -40.82 -0.25 7.77 16 26 H 0.07 1.78 7.64 -51.93 -0.40 1.38 16 27 H -0.01 -0.13 8.08 -51.93 -0.42 -0.55 16 28 H 0.33 6.54 6.50 -39.29 -0.26 6.29 16 29 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 30 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.90 7.55 -52.49 -0.40 1.50 16 39 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -30.00 339.59 -11.21 -41.22 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.82 Total: 8.36 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: -4.44 Total: -34.52 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.02 Total: -40.57 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.00 -11.21 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894197233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.433 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds