Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 120.00365 * 2 1 4 4 H 1.48505 * 109.46804 * 274.52755 * 3 2 1 5 5 H 1.48494 * 109.47184 * 34.52631 * 3 2 1 6 6 H 1.48501 * 109.47154 * 154.52911 * 3 2 1 7 7 C 1.39929 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00430 * 162.07464 * 7 2 1 9 9 C 1.41413 * 119.99626 * 341.79894 * 7 2 1 10 10 C 1.40781 * 120.21003 * 335.03825 * 9 7 2 11 11 C 1.37648 * 119.89296 * 179.74126 * 10 9 7 12 12 C 1.38515 * 120.32836 * 0.51408 * 11 10 9 13 13 C 1.39297 * 120.42362 * 359.76210 * 12 11 10 14 14 N 1.39682 * 119.95483 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99917 * 0.02562 * 14 13 12 16 16 H 1.09002 * 110.77534 * 34.30066 * 15 14 13 17 17 C 1.55057 * 110.87501 * 270.76543 * 15 14 13 18 18 C 1.54891 * 103.65653 * 281.72168 * 17 15 14 19 19 H 1.09008 * 111.97503 * 97.20019 * 18 17 15 20 20 C 1.54181 * 108.83633 * 220.87182 * 18 17 15 21 21 C 1.54849 * 104.30114 * 137.93089 * 20 18 17 22 22 C 1.54848 * 102.73746 * 321.86058 * 21 20 18 23 23 C 1.54176 * 104.30560 * 38.14223 * 22 21 20 24 24 H 1.09003 * 111.46009 * 98.80264 * 23 22 21 25 25 C 1.54331 * 108.84485 * 222.14167 * 23 22 21 26 26 C 1.38319 * 120.09566 * 359.97438 * 13 12 11 27 27 H 0.97008 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05336 * 359.97169 * 10 9 7 29 29 H 1.08006 * 119.83612 * 180.24975 * 11 10 9 30 30 H 1.07992 * 119.79242 * 179.73805 * 12 11 10 31 31 H 0.96998 * 120.00247 * 180.02562 * 14 13 12 32 32 H 1.08997 * 110.54144 * 40.47189 * 17 15 14 33 33 H 1.09003 * 110.53808 * 163.25189 * 17 15 14 34 34 H 1.09001 * 110.46553 * 19.22900 * 20 18 17 35 35 H 1.08998 * 110.57715 * 256.68938 * 20 18 17 36 36 H 1.08995 * 110.75943 * 203.54762 * 21 20 18 37 37 H 1.09001 * 110.91736 * 80.24313 * 21 20 18 38 38 H 1.09000 * 110.46750 * 279.43578 * 22 21 20 39 39 H 1.09000 * 110.46789 * 156.84985 * 22 21 20 40 40 H 1.08998 * 110.54301 * 20.55020 * 25 23 22 41 41 H 1.08999 * 110.54225 * 257.76394 * 25 23 22 42 42 H 1.08002 * 120.16634 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3942 2.1015 -1.3958 5 1 1.4911 2.6231 0.7935 6 1 3.5845 1.4143 0.6021 7 6 2.0079 -1.2118 -0.0005 8 1 3.0486 -1.2345 -0.2884 9 6 1.3538 -2.4060 0.3815 10 6 0.2338 -2.3589 1.2331 11 6 -0.4012 -3.5249 1.5965 12 6 0.0627 -4.7464 1.1370 13 6 1.1732 -4.8091 0.2984 14 7 1.6330 -6.0463 -0.1588 15 6 0.9470 -7.2768 0.2431 16 1 -0.1251 -7.1069 0.3424 17 6 1.5421 -7.8357 1.5613 18 6 2.8507 -8.5287 1.1069 19 1 3.7211 -7.8869 1.2442 20 6 3.0029 -9.8573 1.8743 21 6 3.4923 -10.8635 0.8039 22 6 2.6902 -10.4428 -0.4521 23 6 2.6507 -8.9032 -0.3810 24 1 3.4095 -8.4548 -1.0224 25 6 1.2342 -8.4228 -0.7612 26 6 1.8214 -3.6480 -0.0822 27 1 -0.4850 0.8401 0.0004 28 1 -0.1289 -1.4092 1.5977 29 1 -1.2628 -3.4874 2.2467 30 1 -0.4395 -5.6562 1.4309 31 1 2.4064 -6.0908 -0.7425 32 1 1.7555 -7.0255 2.2585 33 1 0.8623 -8.5594 2.0112 34 1 2.0433 -10.1730 2.2837 35 1 3.7414 -9.7578 2.6698 36 1 3.2481 -11.8853 1.0939 37 1 4.5634 -10.7579 0.6314 38 1 1.6806 -10.8521 -0.4143 39 1 3.2012 -10.7696 -1.3578 40 1 0.5111 -9.2290 -0.6383 41 1 1.2195 -8.0472 -1.7843 42 1 2.6822 -3.6952 -0.7326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894767807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = -3.708692 kcal Electronic energy + Delta-G solvation = -20392.869742 eV Core-core repulsion = 17528.691204 eV Total energy + Delta-G solvation = -2864.178538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81243 -37.56885 -35.19113 -33.39055 -31.54300 -30.43383 -29.68977 -27.57600 -25.89778 -25.36362 -25.00467 -21.18978 -20.94576 -20.45011 -19.30372 -18.73182 -17.28932 -16.32673 -15.60894 -15.19692 -15.03773 -14.47537 -14.21686 -14.02424 -13.63639 -13.15405 -12.66143 -12.56670 -12.16605 -11.99536 -11.69188 -11.43706 -11.33436 -11.19681 -11.02967 -10.87073 -10.83575 -10.70943 -10.59427 -10.51422 -10.41622 -10.34655 -10.08635 -9.68483 -9.25945 -9.13670 -8.65740 -7.33135 -6.67318 -6.13513 -4.26422 2.89128 3.12059 3.17183 3.26896 3.41610 4.00136 4.26931 4.41335 4.49706 4.66169 4.76460 5.12451 5.19107 5.25969 5.43655 5.49209 5.56637 5.59347 5.70037 5.75793 5.84597 5.88948 5.90003 5.96288 6.01979 6.07197 6.18922 6.26672 6.33302 6.40550 6.42126 6.56297 6.62663 7.09010 7.15038 7.16225 7.39164 7.46688 7.85911 7.97251 8.19525 8.30455 8.57421 8.72459 8.84453 9.04768 9.17619 10.29135 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.003627 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.393807 B = 7717.909960 C = 7965.623162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.143 3.857 10 C -0.200 4.200 11 C -0.075 4.075 12 C -0.302 4.302 13 C 0.227 3.773 14 N -0.749 5.749 15 C 0.156 3.844 16 H 0.078 0.922 17 C -0.135 4.135 18 C -0.087 4.087 19 H 0.075 0.925 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.093 4.093 24 H 0.074 0.926 25 C -0.128 4.128 26 C -0.291 4.291 27 H 0.278 0.722 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.386 0.614 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -15.861 0.732 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.139 3.861 10 C -0.220 4.220 11 C -0.094 4.094 12 C -0.324 4.324 13 C 0.129 3.871 14 N -0.381 5.381 15 C 0.049 3.951 16 H 0.096 0.904 17 C -0.174 4.174 18 C -0.106 4.106 19 H 0.093 0.907 20 C -0.157 4.157 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.112 4.112 24 H 0.093 0.907 25 C -0.166 4.166 26 C -0.315 4.315 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.219 0.781 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.093 -15.807 0.802 16.127 hybrid contribution 0.618 0.773 -0.269 1.026 sum 3.711 -15.034 0.534 15.494 Atomic orbital electron populations 1.69870 1.07540 1.28894 1.35487 1.25879 0.94656 1.01111 0.92287 0.86384 0.80827 0.81034 0.78927 1.19703 1.20124 1.18507 1.19536 0.98082 0.91365 1.40618 0.90719 1.17325 0.90227 0.91274 0.87226 1.21134 1.00816 0.96581 1.03510 1.20435 0.97647 0.92968 0.98390 1.19873 1.03430 0.96428 1.12715 1.17466 0.92835 0.84000 0.92820 1.44342 1.34786 1.02404 1.56588 1.21585 0.96620 0.84356 0.92523 0.90443 1.23167 0.95975 0.99659 0.98632 1.22425 0.98462 0.95858 0.93847 0.90674 1.22506 1.00965 0.94862 0.97405 1.22504 0.99677 0.98559 0.95585 1.22501 1.00182 0.95329 0.97644 1.22406 0.97205 0.95100 0.96458 0.90718 1.22877 0.96281 0.97943 0.99464 1.20400 1.06864 0.91620 1.12589 0.91109 0.86997 0.89781 0.89613 0.78087 0.91083 0.91637 0.91586 0.92178 0.92069 0.91815 0.91551 0.92209 0.90742 0.91451 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.11 11.01 55.55 0.61 -20.50 16 2 C 0.08 2.02 5.13 -17.35 -0.09 1.93 16 3 Si 0.90 19.11 29.60 -169.99 -5.03 14.08 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.77 9.05 -37.74 -0.34 -13.11 16 8 H 0.07 1.97 7.91 -52.49 -0.42 1.56 16 9 C 0.14 3.93 5.57 -106.85 -0.59 3.33 16 10 C -0.20 -5.40 8.69 -38.84 -0.34 -5.73 16 11 C -0.08 -1.84 10.01 -39.69 -0.40 -2.24 16 12 C -0.30 -6.92 9.23 -39.09 -0.36 -7.28 16 13 C 0.23 5.14 6.64 -83.86 -0.56 4.58 16 14 N -0.75 -13.39 5.27 -50.12 -0.26 -13.66 16 15 C 0.16 2.31 2.95 -65.75 -0.19 2.12 16 16 H 0.08 1.24 6.52 -51.93 -0.34 0.90 16 17 C -0.14 -1.83 6.08 -24.65 -0.15 -1.98 16 18 C -0.09 -1.04 3.70 -88.10 -0.33 -1.37 16 19 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 20 C -0.12 -1.21 6.36 -25.14 -0.16 -1.37 16 21 C -0.13 -1.13 6.90 -24.78 -0.17 -1.30 16 22 C -0.12 -1.11 6.35 -25.14 -0.16 -1.27 16 23 C -0.09 -1.02 3.60 -88.40 -0.32 -1.34 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 C -0.13 -1.51 5.94 -24.94 -0.15 -1.66 16 26 C -0.29 -7.34 9.63 -38.67 -0.37 -7.71 16 27 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 28 H 0.11 3.12 6.21 -52.49 -0.33 2.79 16 29 H 0.08 1.85 8.06 -52.48 -0.42 1.42 16 30 H 0.09 1.78 6.22 -52.49 -0.33 1.45 16 31 H 0.39 6.46 8.54 -40.82 -0.35 6.11 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.80 7.24 -51.93 -0.38 0.42 16 34 H 0.07 0.65 7.22 -51.93 -0.38 0.27 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.60 7.21 -51.93 -0.37 0.22 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.79 7.23 -51.93 -0.38 0.41 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -27.93 326.86 -11.05 -38.98 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.62 Total: 10.55 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -4.68 Total: -34.38 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.35 Total: -34.16 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.93 -11.05 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.271 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds