Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 120.00365 * 2 1 4 4 H 1.48505 * 109.46804 * 274.52755 * 3 2 1 5 5 H 1.48494 * 109.47184 * 34.52631 * 3 2 1 6 6 H 1.48501 * 109.47154 * 154.52911 * 3 2 1 7 7 C 1.39929 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00430 * 162.07464 * 7 2 1 9 9 C 1.41413 * 119.99626 * 341.79894 * 7 2 1 10 10 C 1.40781 * 120.21003 * 335.03825 * 9 7 2 11 11 C 1.37648 * 119.89296 * 179.74126 * 10 9 7 12 12 C 1.38515 * 120.32836 * 0.51408 * 11 10 9 13 13 C 1.39297 * 120.42362 * 359.76210 * 12 11 10 14 14 N 1.39682 * 119.95483 * 179.97438 * 13 12 11 15 15 C 1.46497 * 119.99917 * 0.02562 * 14 13 12 16 16 H 1.09002 * 110.77534 * 34.30066 * 15 14 13 17 17 C 1.55057 * 110.87501 * 270.76543 * 15 14 13 18 18 C 1.54891 * 103.65653 * 281.72168 * 17 15 14 19 19 H 1.09008 * 111.97503 * 97.20019 * 18 17 15 20 20 C 1.54181 * 108.83633 * 220.87182 * 18 17 15 21 21 C 1.54849 * 104.30114 * 137.93089 * 20 18 17 22 22 C 1.54848 * 102.73746 * 321.86058 * 21 20 18 23 23 C 1.54176 * 104.30560 * 38.14223 * 22 21 20 24 24 H 1.09003 * 111.46009 * 98.80264 * 23 22 21 25 25 C 1.54331 * 108.84485 * 222.14167 * 23 22 21 26 26 C 1.38319 * 120.09566 * 359.97438 * 13 12 11 27 27 H 0.97008 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.05336 * 359.97169 * 10 9 7 29 29 H 1.08006 * 119.83612 * 180.24975 * 11 10 9 30 30 H 1.07992 * 119.79242 * 179.73805 * 12 11 10 31 31 H 0.96998 * 120.00247 * 180.02562 * 14 13 12 32 32 H 1.08997 * 110.54144 * 40.47189 * 17 15 14 33 33 H 1.09003 * 110.53808 * 163.25189 * 17 15 14 34 34 H 1.09001 * 110.46553 * 19.22900 * 20 18 17 35 35 H 1.08998 * 110.57715 * 256.68938 * 20 18 17 36 36 H 1.08995 * 110.75943 * 203.54762 * 21 20 18 37 37 H 1.09001 * 110.91736 * 80.24313 * 21 20 18 38 38 H 1.09000 * 110.46750 * 279.43578 * 22 21 20 39 39 H 1.09000 * 110.46789 * 156.84985 * 22 21 20 40 40 H 1.08998 * 110.54301 * 20.55020 * 25 23 22 41 41 H 1.08999 * 110.54225 * 257.76394 * 25 23 22 42 42 H 1.08002 * 120.16634 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3942 2.1015 -1.3958 5 1 1.4911 2.6231 0.7935 6 1 3.5845 1.4143 0.6021 7 6 2.0079 -1.2118 -0.0005 8 1 3.0486 -1.2345 -0.2884 9 6 1.3538 -2.4060 0.3815 10 6 0.2338 -2.3589 1.2331 11 6 -0.4012 -3.5249 1.5965 12 6 0.0627 -4.7464 1.1370 13 6 1.1732 -4.8091 0.2984 14 7 1.6330 -6.0463 -0.1588 15 6 0.9470 -7.2768 0.2431 16 1 -0.1251 -7.1069 0.3424 17 6 1.5421 -7.8357 1.5613 18 6 2.8507 -8.5287 1.1069 19 1 3.7211 -7.8869 1.2442 20 6 3.0029 -9.8573 1.8743 21 6 3.4923 -10.8635 0.8039 22 6 2.6902 -10.4428 -0.4521 23 6 2.6507 -8.9032 -0.3810 24 1 3.4095 -8.4548 -1.0224 25 6 1.2342 -8.4228 -0.7612 26 6 1.8214 -3.6480 -0.0822 27 1 -0.4850 0.8401 0.0004 28 1 -0.1289 -1.4092 1.5977 29 1 -1.2628 -3.4874 2.2467 30 1 -0.4395 -5.6562 1.4309 31 1 2.4064 -6.0908 -0.7425 32 1 1.7555 -7.0255 2.2585 33 1 0.8623 -8.5594 2.0112 34 1 2.0433 -10.1730 2.2837 35 1 3.7414 -9.7578 2.6698 36 1 3.2481 -11.8853 1.0939 37 1 4.5634 -10.7579 0.6314 38 1 1.6806 -10.8521 -0.4143 39 1 3.2012 -10.7696 -1.3578 40 1 0.5111 -9.2290 -0.6383 41 1 1.2195 -8.0472 -1.7843 42 1 2.6822 -3.6952 -0.7326 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894767807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = -16.582528 kcal Electronic energy + Delta-G solvation = -20393.427993 eV Core-core repulsion = 17528.691204 eV Total energy + Delta-G solvation = -2864.736789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86518 -39.31612 -36.66790 -35.11669 -32.95949 -31.67653 -31.31228 -29.11587 -27.29771 -26.90296 -26.17850 -22.84217 -22.50432 -21.57621 -20.73353 -19.65449 -19.13183 -17.40342 -17.29260 -16.77963 -16.44656 -16.13332 -15.50181 -15.05004 -14.77266 -14.64447 -14.38051 -14.00632 -13.83075 -13.30847 -13.19995 -12.89098 -12.77822 -12.64852 -12.36446 -12.23591 -12.03596 -11.86930 -11.63123 -11.61730 -11.57273 -11.44896 -11.33752 -11.20576 -11.12239 -10.94691 -10.37814 -9.32502 -8.60874 -7.89716 -6.31984 1.05712 1.35171 1.38897 1.52148 1.60162 2.22867 2.80142 2.83370 3.50425 3.59158 3.77552 3.87133 4.21497 4.34262 4.38972 4.44513 4.49561 4.59815 4.65325 4.69896 4.73520 4.83497 4.92916 4.93525 4.99947 5.03862 5.11997 5.14914 5.16756 5.18606 5.27716 5.32555 5.39029 5.40433 5.44893 5.55287 5.58618 5.62822 5.98196 6.04248 6.21612 6.32830 6.64944 6.92083 7.03072 7.08823 7.28061 8.37943 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.003627 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.393807 B = 7717.909960 C = 7965.623162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.114 3.886 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.302 4.302 13 C 0.238 3.762 14 N -0.739 5.739 15 C 0.145 3.855 16 H 0.069 0.931 17 C -0.129 4.129 18 C -0.088 4.088 19 H 0.057 0.943 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.092 4.092 24 H 0.070 0.930 25 C -0.117 4.117 26 C -0.315 4.315 27 H 0.287 0.713 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.392 0.608 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -17.837 0.562 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.111 3.889 10 C -0.254 4.254 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.137 3.863 14 N -0.370 5.370 15 C 0.039 3.961 16 H 0.087 0.913 17 C -0.168 4.168 18 C -0.107 4.107 19 H 0.076 0.924 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.110 4.110 24 H 0.089 0.911 25 C -0.155 4.155 26 C -0.340 4.340 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.226 0.774 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.266 -17.841 0.624 18.148 hybrid contribution 0.530 1.231 -0.209 1.357 sum 3.796 -16.610 0.415 17.043 Atomic orbital electron populations 1.69926 1.09039 1.30346 1.35689 1.26759 0.95471 1.04457 0.91162 0.85223 0.79171 0.76054 0.79386 1.18648 1.18917 1.18387 1.19797 0.98258 0.92775 1.42689 0.91101 1.17685 0.90937 0.92396 0.87833 1.21060 1.02137 0.96813 1.05388 1.20728 0.97885 0.92731 0.98105 1.20159 1.03376 0.96876 1.12127 1.17520 0.92043 0.85096 0.91656 1.44418 1.34775 1.02002 1.55760 1.21860 0.95831 0.83871 0.94505 0.91278 1.23107 0.97254 0.99261 0.97223 1.22395 0.96791 0.96521 0.94999 0.92428 1.22486 1.01463 0.93968 0.97609 1.22496 0.99665 0.98963 0.94843 1.22481 1.00947 0.93527 0.98245 1.22388 0.96482 0.96703 0.95463 0.91140 1.22845 0.97337 0.97038 0.98276 1.20520 1.07635 0.92177 1.13619 0.90284 0.88809 0.87525 0.87010 0.77400 0.93944 0.89644 0.90931 0.92139 0.90543 0.91783 0.90645 0.91288 0.88588 0.91650 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.18 11.01 21.82 0.24 -44.94 16 2 C 0.04 1.92 5.13 85.25 0.44 2.36 16 3 Si 0.98 39.82 29.60 68.60 2.03 41.85 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 7 C -0.51 -28.88 9.05 23.46 0.21 -28.67 16 8 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 9 C 0.11 6.58 5.57 -21.31 -0.12 6.46 16 10 C -0.23 -13.08 8.69 22.75 0.20 -12.88 16 11 C -0.08 -3.73 10.01 22.20 0.22 -3.50 16 12 C -0.30 -13.75 9.23 22.59 0.21 -13.54 16 13 C 0.24 10.83 6.64 38.16 0.25 11.09 16 14 N -0.74 -25.96 5.27 -312.49 -1.65 -27.60 16 15 C 0.15 4.05 2.95 46.40 0.14 4.18 16 16 H 0.07 2.07 6.52 -2.39 -0.02 2.05 16 17 C -0.13 -3.30 6.08 31.94 0.19 -3.10 16 18 C -0.09 -1.95 3.70 -9.16 -0.03 -1.99 16 19 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 20 C -0.12 -2.07 6.36 31.63 0.20 -1.87 16 21 C -0.12 -1.79 6.90 31.86 0.22 -1.57 16 22 C -0.11 -1.73 6.35 31.62 0.20 -1.53 16 23 C -0.09 -1.79 3.60 -9.35 -0.03 -1.83 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.12 -2.46 5.94 31.75 0.19 -2.27 16 26 C -0.32 -16.44 9.63 22.86 0.22 -16.22 16 27 H 0.29 14.13 8.30 -92.70 -0.77 13.36 16 28 H 0.09 5.49 6.21 -2.91 -0.02 5.47 16 29 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.11 4.45 6.22 -2.91 -0.02 4.43 16 31 H 0.39 12.93 8.54 -92.71 -0.79 12.14 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.84 7.24 -2.39 -0.02 1.83 16 34 H 0.07 1.19 7.22 -2.39 -0.02 1.18 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.03 7.21 -2.39 -0.02 1.01 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 1.65 7.23 -2.39 -0.02 1.64 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -62.30 326.86 3.54 -58.75 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.21 Total: 36.82 kcal Atomic # 6 Polarization: -67.59 SS G_CDS: 2.71 Total: -64.88 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.41 Total: -72.54 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -62.30 3.54 -58.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.170 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds