Wall clock time and date at job start Mon Mar 30 2020 01:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48493 * 109.47124 * 239.99700 * 3 2 1 5 5 H 1.48500 * 109.47337 * 119.99264 * 3 2 1 6 6 H 1.48503 * 109.46881 * 359.97438 * 3 2 1 7 7 C 1.39929 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00242 * 206.93142 * 7 2 1 9 9 C 1.41414 * 119.99845 * 26.92297 * 7 2 1 10 10 C 1.40778 * 120.20810 * 204.99195 * 9 7 2 11 11 C 1.37650 * 119.89286 * 179.81262 * 10 9 7 12 12 C 1.38520 * 120.32580 * 0.44775 * 11 10 9 13 13 C 1.39296 * 120.42145 * 359.78673 * 12 11 10 14 14 N 1.39687 * 119.94977 * 179.97438 * 13 12 11 15 15 C 1.46491 * 120.00244 * 0.02562 * 14 13 12 16 16 C 1.55917 * 110.17005 * 272.56072 * 15 14 13 17 17 C 1.50148 * 103.99621 * 247.48578 * 16 15 14 18 18 H 1.08996 * 107.84507 * 78.48423 * 17 16 15 19 19 C 1.49977 * 126.84955 * 209.60560 * 17 16 15 20 20 C 1.55923 * 104.08439 * 150.34491 * 19 17 16 21 21 C 1.56253 * 105.86717 * 353.41932 * 20 19 17 22 22 C 1.51728 * 101.92220 * 334.75475 * 21 20 19 23 23 H 1.09002 * 110.89120 * 287.15697 * 22 21 20 24 24 C 1.51733 * 122.52211 * 153.03738 * 22 21 20 25 25 C 1.38323 * 120.09839 * 359.97438 * 13 12 11 26 26 H 0.97006 * 119.99537 * 184.13564 * 1 2 3 27 27 H 1.08002 * 120.05815 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.83563 * 180.23761 * 11 10 9 29 29 H 1.07994 * 119.79164 * 179.76489 * 12 11 10 30 30 H 0.97001 * 119.99522 * 180.02562 * 14 13 12 31 31 H 1.09004 * 110.14732 * 34.29558 * 15 14 13 32 32 H 1.09002 * 110.50627 * 6.12178 * 16 15 14 33 33 H 1.09000 * 110.50856 * 128.82584 * 16 15 14 34 34 H 1.09000 * 110.50673 * 31.69533 * 19 17 16 35 35 H 1.08999 * 110.62769 * 269.05146 * 19 17 16 36 36 H 1.09005 * 110.16992 * 234.32587 * 20 19 17 37 37 H 1.08998 * 110.17299 * 112.52160 * 20 19 17 38 38 H 1.08997 * 110.94074 * 216.59404 * 21 20 19 39 39 H 1.09000 * 110.96806 * 92.92775 * 21 20 19 40 40 H 1.08998 * 110.94023 * 88.79914 * 24 22 21 41 41 H 1.08997 * 110.97350 * 325.12249 * 24 22 21 42 42 H 1.07996 * 120.16261 * 179.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 3.0959 1.6966 1.2126 6 1 1.2772 2.7465 -0.0006 7 6 2.0080 -1.2118 0.0005 8 1 3.0002 -1.2623 0.4242 9 6 1.4159 -2.3704 -0.5535 10 6 1.8210 -3.6479 -0.1227 11 6 1.2376 -4.7712 -0.6636 12 6 0.2595 -4.6515 -1.6372 13 6 -0.1480 -3.3941 -2.0767 14 7 -1.1347 -3.2849 -3.0594 15 6 -1.7406 -4.4920 -3.6264 16 6 -0.8954 -5.0017 -4.8335 17 6 -1.7888 -4.7832 -6.0204 18 1 -1.7452 -3.7257 -6.2810 19 6 -1.8130 -5.5849 -7.2876 20 6 -3.2905 -5.4804 -7.7746 21 6 -4.0652 -4.7451 -6.6342 22 6 -3.2160 -5.0687 -5.4192 23 1 -3.3403 -6.1107 -5.1244 24 6 -3.1563 -4.1653 -4.2016 25 6 0.4231 -2.2535 -1.5416 26 1 -0.4850 -0.8379 0.0606 27 1 2.5859 -3.7466 0.6334 28 1 1.5464 -5.7508 -0.3297 29 1 -0.1897 -5.5387 -2.0584 30 1 -1.4187 -2.4096 -3.3662 31 1 -1.8143 -5.2684 -2.8649 32 1 0.0203 -4.4186 -4.9317 33 1 -0.6646 -6.0606 -4.7180 34 1 -1.5494 -6.6234 -7.0875 35 1 -1.1362 -5.1557 -8.0265 36 1 -3.7063 -6.4760 -7.9300 37 1 -3.3422 -4.9025 -8.6973 38 1 -5.0719 -5.1482 -6.5244 39 1 -4.0955 -3.6703 -6.8133 40 1 -3.9367 -4.4240 -3.4859 41 1 -3.2270 -3.1166 -4.4900 42 1 0.1082 -1.2782 -1.8820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894767808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:23 Heat of formation + Delta-G solvation = -11.783524 kcal Electronic energy + Delta-G solvation = -20468.748853 eV Core-core repulsion = 17604.220165 eV Total energy + Delta-G solvation = -2864.528689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21877 -39.63238 -36.92873 -35.41869 -33.47676 -31.25310 -31.08846 -29.55663 -27.11529 -26.78374 -26.41561 -23.08807 -22.41823 -21.32591 -20.97784 -20.46594 -19.52262 -17.49072 -17.02321 -16.59391 -16.32468 -15.75533 -15.62686 -15.59144 -15.33087 -14.56219 -14.31107 -14.08234 -13.85518 -13.73094 -13.24749 -13.11438 -12.87625 -12.48539 -12.38015 -12.29860 -12.08629 -11.98229 -11.93000 -11.74019 -11.51985 -11.40160 -11.28073 -11.13060 -10.88689 -10.87372 -10.55665 -9.46050 -9.22642 -8.05893 -6.43970 1.01885 1.18644 1.49855 1.67055 1.79758 2.34349 2.69448 2.75393 3.14713 3.64369 3.68997 3.73875 4.12678 4.15106 4.24426 4.26549 4.40477 4.53077 4.58860 4.64364 4.68099 4.74170 4.75734 4.85787 4.87498 4.94934 5.01513 5.06142 5.11331 5.16337 5.22179 5.24664 5.28033 5.36139 5.47029 5.53049 5.57230 5.71530 5.74488 5.95869 6.03318 6.18897 6.36439 6.71828 6.93580 7.00828 7.11421 8.07397 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025941 B = 0.004088 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.115230 B = 6848.366816 C = 7402.183169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.006 3.994 3 Si 1.116 2.884 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.270 1.270 7 C -0.568 4.568 8 H 0.067 0.933 9 C 0.102 3.898 10 C -0.291 4.291 11 C -0.050 4.050 12 C -0.308 4.308 13 C 0.242 3.758 14 N -0.745 5.745 15 C 0.152 3.848 16 C -0.116 4.116 17 C -0.106 4.106 18 H 0.050 0.950 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.102 4.102 23 H 0.087 0.913 24 C -0.109 4.109 25 C -0.310 4.310 26 H 0.282 0.718 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.390 0.610 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 -8.414 -13.401 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.210 4.210 3 Si 0.933 3.067 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.098 3.902 10 C -0.312 4.312 11 C -0.069 4.069 12 C -0.331 4.331 13 C 0.139 3.861 14 N -0.375 5.375 15 C 0.046 3.954 16 C -0.155 4.155 17 C -0.125 4.125 18 H 0.069 0.931 19 C -0.145 4.145 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.121 4.121 23 H 0.105 0.895 24 C -0.147 4.147 25 C -0.334 4.334 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.213 -6.978 -13.474 17.254 hybrid contribution 0.392 -1.231 0.349 1.338 sum -7.821 -8.208 -13.125 17.344 Atomic orbital electron populations 1.70564 1.08890 1.33031 1.31407 1.28371 0.95707 1.07261 0.89658 0.83031 0.74810 0.69876 0.78973 1.19099 1.18254 1.19438 1.20735 1.04231 0.95915 1.38723 0.91511 1.17734 0.90046 0.93257 0.89127 1.20956 1.09195 0.93051 1.08010 1.20709 0.94476 0.97193 0.94518 1.20213 1.08912 0.94629 1.09344 1.17668 0.87523 0.93503 0.87356 1.44744 1.42215 1.07749 1.42760 1.22442 0.91718 0.87126 0.94127 1.21955 0.97718 1.01059 0.94795 1.21584 0.96080 1.00170 0.94685 0.93142 1.21470 0.97491 1.00131 0.95422 1.22890 0.93502 1.01087 0.97977 1.21962 0.98571 1.00466 0.93662 1.22295 0.95996 0.99858 0.93951 0.89466 1.22152 0.94877 1.00058 0.97608 1.20445 1.10176 0.95489 1.07325 0.90564 0.89391 0.86123 0.86573 0.77586 0.90837 0.93671 0.91006 0.91230 0.91888 0.90490 0.91174 0.90456 0.91851 0.90639 0.91347 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.93 12.38 21.82 0.27 -45.66 16 2 C 0.01 0.34 4.90 85.25 0.42 0.76 16 3 Si 1.12 45.21 30.01 68.60 2.06 47.27 16 4 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.57 -32.56 8.97 23.46 0.21 -32.35 16 8 H 0.07 3.76 7.97 -2.91 -0.02 3.74 16 9 C 0.10 5.78 5.29 -21.31 -0.11 5.67 16 10 C -0.29 -15.26 9.79 22.75 0.22 -15.04 16 11 C -0.05 -2.29 10.02 22.20 0.22 -2.07 16 12 C -0.31 -13.60 9.22 22.59 0.21 -13.39 16 13 C 0.24 11.21 6.64 38.16 0.25 11.46 16 14 N -0.74 -27.80 5.23 -309.09 -1.62 -29.42 16 15 C 0.15 4.42 2.98 47.13 0.14 4.56 16 16 C -0.12 -3.13 6.51 30.69 0.20 -2.93 16 17 C -0.11 -2.32 2.49 -11.11 -0.03 -2.35 16 18 H 0.05 1.23 8.01 -2.39 -0.02 1.21 16 19 C -0.11 -1.88 6.73 30.63 0.21 -1.67 16 20 C -0.12 -1.66 6.94 32.74 0.23 -1.44 16 21 C -0.11 -1.71 6.62 31.31 0.21 -1.51 16 22 C -0.10 -1.96 2.98 -10.05 -0.03 -1.99 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 C -0.11 -2.52 6.29 31.31 0.20 -2.32 16 25 C -0.31 -16.73 7.81 22.86 0.18 -16.55 16 26 H 0.28 16.66 6.72 -92.70 -0.62 16.04 16 27 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 29 H 0.12 4.44 6.22 -2.91 -0.02 4.43 16 30 H 0.39 14.27 8.43 -92.71 -0.78 13.49 16 31 H 0.07 2.24 6.48 -2.39 -0.02 2.22 16 32 H 0.04 1.46 7.98 -2.39 -0.02 1.44 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.63 7.83 -2.39 -0.02 1.61 16 42 H 0.08 4.71 6.53 -2.91 -0.02 4.69 16 Total: -1.00 -62.27 328.68 3.80 -58.47 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: 0.36 Total: 40.49 kcal Atomic # 6 Polarization: -73.88 SS G_CDS: 2.72 Total: -71.16 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -1.35 Total: -75.08 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.06 Total: 47.27 kcal Total: -62.27 3.80 -58.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894767808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.690 kcal (2) G-P(sol) polarization free energy of solvation -62.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds