Wall clock time and date at job start Mon Mar 30 2020 01:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48506 * 109.46847 * 269.99613 * 3 2 1 5 5 H 1.48497 * 109.47286 * 29.99592 * 3 2 1 6 6 H 1.48495 * 109.47201 * 149.99843 * 3 2 1 7 7 C 1.37886 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99499 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46758 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47175 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.48552 * 111.00147 * 290.12951 * 12 11 10 14 14 C 1.54380 * 104.59638 * 200.95451 * 13 12 11 15 15 H 1.09001 * 118.16124 * 163.55303 * 14 13 12 16 16 C 1.53002 * 118.12775 * 320.47880 * 14 13 12 17 17 C 1.52999 * 60.48866 * 91.64353 * 16 14 13 18 18 C 1.50696 * 119.52548 * 111.76121 * 17 16 14 19 19 C 1.38241 * 120.00115 * 289.49194 * 18 17 16 20 20 C 1.38234 * 120.00186 * 179.79046 * 19 18 17 21 21 C 1.38236 * 119.99740 * 0.43879 * 20 19 18 22 22 C 1.38237 * 119.99992 * 359.81778 * 21 20 19 23 23 C 1.38230 * 120.00297 * 359.97438 * 22 21 20 24 24 C 1.50633 * 111.16672 * 173.62365 * 12 11 10 25 25 H 0.96995 * 120.00714 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47136 * 60.00649 * 9 7 2 27 27 H 1.08994 * 109.47740 * 299.99919 * 9 7 2 28 28 H 1.08996 * 109.47079 * 59.99967 * 10 9 7 29 29 H 1.09007 * 109.46908 * 300.00162 * 10 9 7 30 30 H 1.09010 * 109.47332 * 59.99797 * 11 10 9 31 31 H 1.08996 * 109.47288 * 300.00543 * 11 10 9 32 32 H 1.09007 * 110.41583 * 82.17790 * 13 12 11 33 33 H 1.08997 * 110.41634 * 319.73429 * 13 12 11 34 34 H 1.09002 * 117.44385 * 344.01669 * 16 14 13 35 35 H 1.09003 * 117.44238 * 199.26989 * 16 14 13 36 36 H 1.08004 * 119.99654 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.00376 * 180.27920 * 20 19 18 38 38 H 1.07998 * 120.00244 * 179.83408 * 21 20 19 39 39 H 1.08000 * 119.99533 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00464 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.15561 * 40.54009 * 24 12 11 42 42 H 1.09001 * 112.66767 * 277.43324 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4350 -6.1036 -0.0007 13 6 3.1436 -6.1975 -1.3029 14 6 3.6635 -7.6500 -1.3591 15 1 3.9791 -8.0465 -2.3242 16 6 4.2144 -8.2693 -0.0730 17 6 2.7345 -8.4437 -0.4197 18 6 2.2135 -9.8095 -0.7860 19 6 2.5709 -10.3853 -1.9910 20 6 2.0965 -11.6400 -2.3251 21 6 1.2575 -12.3150 -1.4584 22 6 0.8959 -11.7370 -0.2558 23 6 1.3737 -10.4842 0.0802 24 6 1.7273 -7.4243 0.1546 25 1 -0.4851 0.8399 -0.0004 26 1 0.6248 -2.5571 -0.8898 27 1 0.6240 -2.5568 0.8902 28 1 2.8719 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8895 30 1 0.8539 -5.0446 -0.8904 31 1 0.8534 -5.0451 0.8896 32 1 3.9760 -5.4944 -1.3344 33 1 2.4540 -6.0085 -2.1256 34 1 4.4625 -7.5921 0.7444 35 1 4.8599 -9.1420 -0.1721 36 1 3.2237 -9.8564 -2.6696 37 1 2.3793 -12.0917 -3.2644 38 1 0.8847 -13.2941 -1.7205 39 1 0.2401 -12.2643 0.4211 40 1 1.0916 -10.0328 1.0199 41 1 0.8152 -7.4137 -0.4420 42 1 1.4999 -7.6592 1.1944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931933392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:44 Heat of formation + Delta-G solvation = 34.113545 kcal Electronic energy + Delta-G solvation = -19791.343298 eV Core-core repulsion = 16928.804855 eV Total energy + Delta-G solvation = -2862.538443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45000 -39.44734 -36.81091 -35.09575 -32.90351 -31.99334 -31.50655 -29.12735 -28.56898 -25.95379 -24.15735 -23.46233 -23.24513 -22.03993 -20.78961 -20.14735 -18.56211 -18.02770 -16.76814 -16.63295 -16.40442 -15.77491 -15.63269 -15.31785 -15.03387 -14.68592 -14.44733 -14.21508 -14.09257 -13.85421 -13.49421 -13.48516 -13.10676 -12.89372 -12.70097 -12.49525 -12.22173 -12.17151 -11.91689 -11.90436 -11.51650 -11.38317 -11.24038 -11.09164 -10.67471 -10.56010 -9.80808 -9.48524 -9.46413 -8.21043 -6.32200 0.43545 0.51707 1.39380 1.41031 1.52452 2.40261 2.57161 2.85413 2.97938 3.12012 3.45570 3.62732 3.73033 4.01614 4.09872 4.17013 4.17481 4.24562 4.31326 4.45638 4.57244 4.58370 4.66116 4.68582 4.75146 4.81175 4.85691 4.91019 4.93476 4.95576 5.06029 5.12691 5.17610 5.21829 5.29138 5.50432 5.60207 5.64286 5.70412 5.72447 5.82648 5.84711 5.99062 6.13360 6.25684 6.84446 7.37037 8.91063 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.043511 B = 0.002906 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.365824 B = 9633.529144 C = 9898.899474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.085 4.085 11 C 0.060 3.940 12 N -0.521 5.521 13 C 0.059 3.941 14 C -0.155 4.155 15 H 0.134 0.866 16 C -0.111 4.111 17 C -0.113 4.113 18 C -0.046 4.046 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.126 4.126 24 C 0.073 3.927 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.042 0.958 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 -25.731 -3.204 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.123 4.123 11 C -0.068 4.068 12 N -0.245 5.245 13 C -0.069 4.069 14 C -0.173 4.173 15 H 0.152 0.848 16 C -0.147 4.147 17 C -0.113 4.113 18 C -0.047 4.047 19 C -0.147 4.147 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.054 4.054 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.060 0.940 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.823 -25.501 -2.765 26.303 hybrid contribution -0.719 1.131 -0.641 1.486 sum 5.104 -24.370 -3.406 25.131 Atomic orbital electron populations 1.70092 1.07830 1.27818 1.51723 1.26004 0.95794 1.03432 0.94683 0.85431 0.78667 0.78314 0.78556 1.19669 1.20616 1.18748 1.21683 0.93519 0.92366 1.50512 0.92277 1.18968 0.94380 0.93114 0.94684 1.21322 0.97890 0.92461 1.00630 1.22148 0.93744 0.90857 1.00091 1.65562 1.25486 1.02101 1.31366 1.22617 0.98003 0.96106 0.90180 1.23462 1.04185 0.93047 0.96643 0.84814 1.22951 0.92270 1.01844 0.97675 1.20988 0.91738 0.92702 1.05914 1.18926 0.97737 0.93137 0.94888 1.21208 1.01065 0.96246 0.96179 1.21421 0.97637 0.94616 1.00471 1.21484 0.98204 1.00938 0.94348 1.21426 0.99997 0.95176 0.97605 1.21149 0.97897 0.95585 0.99778 1.22843 0.94341 0.87021 1.01212 0.92729 0.99248 0.98976 0.92943 0.93296 0.95604 0.91309 0.90000 0.93721 0.88648 0.86803 0.85436 0.84104 0.83976 0.84223 0.85767 0.93957 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.43 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.68 5.21 30.59 0.16 -3.52 16 11 C 0.06 2.18 4.84 86.30 0.42 2.60 16 12 N -0.52 -15.98 4.93 -875.62 -4.32 -20.30 16 13 C 0.06 1.62 5.68 86.45 0.49 2.12 16 14 C -0.16 -3.38 6.49 -9.94 -0.06 -3.44 16 15 H 0.13 2.38 6.94 -2.39 -0.02 2.37 16 16 C -0.11 -2.29 9.67 30.59 0.30 -1.99 16 17 C -0.11 -2.51 2.71 -52.08 -0.14 -2.65 16 18 C -0.05 -0.96 5.50 -19.86 -0.11 -1.07 16 19 C -0.13 -2.36 9.51 22.27 0.21 -2.14 16 20 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 21 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 22 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 23 C -0.13 -2.43 9.43 22.27 0.21 -2.22 16 24 C 0.07 1.90 5.92 86.04 0.51 2.41 16 25 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 26 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.07 7.25 -2.38 -0.02 2.05 16 30 H 0.03 0.96 7.88 -2.38 -0.02 0.94 16 31 H 0.07 2.51 8.13 -2.39 -0.02 2.49 16 32 H 0.08 2.34 7.76 -2.38 -0.02 2.32 16 33 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16 34 H 0.10 2.22 8.00 -2.39 -0.02 2.20 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.13 2.03 6.54 -2.91 -0.02 2.01 16 37 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 40 H 0.12 2.23 7.92 -2.91 -0.02 2.21 16 41 H 0.04 1.16 7.98 -2.39 -0.02 1.14 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -66.06 340.88 2.46 -63.60 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.97 Total: 12.00 kcal Atomic # 6 Polarization: -48.19 SS G_CDS: 3.49 Total: -44.70 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -4.04 Total: -77.96 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.06 2.46 -63.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931933392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.718 kcal (2) G-P(sol) polarization free energy of solvation -66.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds