Wall clock time and date at job start Mon Mar 30 2020 01:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.48561 * 110.99759 * 54.58261 * 12 11 10 14 14 C 1.54381 * 104.59554 * 159.04235 * 13 12 11 15 15 H 1.09001 * 118.15816 * 196.44330 * 14 13 12 16 16 C 1.52999 * 118.12731 * 39.51840 * 14 13 12 17 17 C 1.52997 * 60.54799 * 268.33446 * 16 14 13 18 18 C 1.50702 * 120.23396 * 248.54358 * 17 16 14 19 19 C 1.38232 * 119.99840 * 68.02923 * 18 17 16 20 20 C 1.38241 * 119.99879 * 179.76652 * 19 18 17 21 21 C 1.38233 * 119.99832 * 0.50096 * 20 19 18 22 22 C 1.38238 * 120.00200 * 359.75109 * 21 20 19 23 23 C 1.38233 * 120.00007 * 248.29672 * 18 17 16 24 24 C 1.48555 * 110.99917 * 170.00000 * 12 11 10 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.09006 * 110.41278 * 277.81600 * 13 12 11 33 33 H 1.08992 * 110.41412 * 40.26124 * 13 12 11 34 34 H 1.09003 * 117.44074 * 160.69041 * 16 14 13 35 35 H 1.08991 * 117.44654 * 15.98236 * 16 14 13 36 36 H 1.08000 * 119.99976 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.99896 * 180.22928 * 20 19 18 38 38 H 1.07997 * 120.00143 * 179.72416 * 21 20 19 39 39 H 1.07994 * 120.00351 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00208 * 0.02562 * 23 18 17 41 41 H 1.09001 * 110.41306 * 319.73767 * 24 12 11 42 42 H 1.08993 * 110.41560 * 82.06682 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 3.3927 -5.9858 1.1302 14 6 3.9386 -7.4162 1.3281 15 1 4.4487 -7.6473 2.2633 16 6 4.2303 -8.2558 0.0827 17 6 2.8533 -8.3439 0.7438 18 6 2.4278 -9.6080 1.4452 19 6 3.0569 -9.9954 2.6136 20 6 2.6634 -11.1525 3.2596 21 6 1.6478 -11.9276 2.7316 22 6 1.0222 -11.5429 1.5605 23 6 1.4122 -10.3831 0.9173 24 6 1.7430 -7.3958 0.2420 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 4.2019 -5.3024 0.8728 33 1 2.8794 -5.6469 2.0300 34 1 4.8982 -9.1095 0.1975 35 1 4.2969 -7.7329 -0.8713 36 1 3.8536 -9.3924 3.0235 37 1 3.1523 -11.4532 4.1743 38 1 1.3433 -12.8339 3.2339 39 1 0.2290 -12.1486 1.1478 40 1 0.9240 -10.0829 0.0020 41 1 0.9715 -7.2776 1.0029 42 1 1.3083 -7.7730 -0.6836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931933395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:48 Heat of formation + Delta-G solvation = 49.892512 kcal Electronic energy + Delta-G solvation = -19841.163168 eV Core-core repulsion = 16979.308952 eV Total energy + Delta-G solvation = -2861.854215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58374 -38.68069 -35.41175 -33.23122 -31.31817 -31.20815 -30.58286 -28.03913 -26.86946 -24.46925 -23.10919 -22.71318 -21.93511 -20.57251 -19.60543 -19.03307 -17.34862 -16.30890 -15.78039 -15.43976 -14.90728 -14.86175 -14.43178 -14.00056 -13.91737 -13.57945 -13.45047 -13.19578 -12.74334 -12.63295 -12.19848 -11.98034 -11.65928 -11.44214 -11.28373 -11.11816 -10.98657 -10.81657 -10.51167 -10.43719 -10.37306 -9.82229 -9.59297 -9.34294 -9.10955 -9.04507 -8.69074 -8.33088 -8.25573 -5.98317 -4.00415 1.15327 1.21514 3.33246 3.39217 3.41017 3.42765 3.74490 4.11538 4.43655 4.48358 4.52439 4.64257 4.80448 4.83091 4.92856 5.03449 5.27060 5.31684 5.37502 5.41638 5.57796 5.66173 5.69367 5.75580 5.78742 5.85172 5.87528 5.92874 5.97249 6.07095 6.16989 6.29387 6.31889 6.32464 6.46567 6.67198 6.77131 6.81115 6.98633 7.19251 7.34600 7.69486 7.84195 8.01983 8.45138 9.06733 9.63531 11.13189 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.040070 B = 0.002964 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.601029 B = 9443.927897 C = 9670.617781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.046 3.954 12 N -0.511 5.511 13 C 0.061 3.939 14 C -0.161 4.161 15 H 0.114 0.886 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.029 4.029 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.118 4.118 23 C -0.111 4.111 24 C 0.071 3.929 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.049 0.951 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -23.695 4.215 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.082 4.082 12 N -0.235 5.235 13 C -0.067 4.067 14 C -0.179 4.179 15 H 0.132 0.868 16 C -0.152 4.152 17 C -0.117 4.117 18 C -0.029 4.029 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.057 4.057 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.068 0.932 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.263 -23.531 3.699 24.395 hybrid contribution -0.141 0.943 0.904 1.314 sum 5.123 -22.588 4.603 23.615 Atomic orbital electron populations 1.69968 1.06063 1.26555 1.51029 1.25032 0.94847 0.99261 0.95388 0.86597 0.79834 0.83479 0.78115 1.20642 1.21257 1.19887 1.21247 0.93033 0.91042 1.50341 0.92692 1.19067 0.94004 0.91368 0.97113 1.21687 0.99236 0.92794 1.00802 1.22466 0.94118 0.91020 1.00550 1.65494 1.15525 1.01805 1.40635 1.22603 0.96367 0.94431 0.93280 1.23523 1.02567 0.93085 0.98726 0.86794 1.22904 0.94247 1.00499 0.97580 1.21103 0.90938 0.94317 1.05294 1.18870 0.95772 0.93954 0.94321 1.21036 1.00346 0.96998 0.95258 1.21110 0.97610 0.95090 0.99839 1.21130 0.97034 0.99954 0.96589 1.21143 0.99891 0.96821 0.95778 1.20992 0.97171 0.94665 1.00067 1.22509 0.94011 0.89151 1.00006 0.93037 0.96568 0.96837 0.93396 0.92540 0.90821 0.95033 0.89369 0.92921 0.88623 0.87491 0.86177 0.86173 0.86283 0.86074 0.85923 0.93238 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.25 4.87 -26.74 -0.13 -2.38 16 11 C 0.05 0.82 5.06 -3.83 -0.02 0.80 16 12 N -0.51 -7.85 5.07 -229.97 -1.17 -9.02 16 13 C 0.06 0.87 5.01 -2.18 -0.01 0.86 16 14 C -0.16 -1.88 6.49 -89.24 -0.58 -2.46 16 15 H 0.11 1.16 6.95 -51.93 -0.36 0.80 16 16 C -0.12 -1.28 9.70 -26.73 -0.26 -1.54 16 17 C -0.12 -1.36 2.75 -154.27 -0.42 -1.79 16 18 C -0.03 -0.32 5.53 -104.63 -0.58 -0.90 16 19 C -0.12 -1.21 9.51 -39.58 -0.38 -1.58 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 23 C -0.11 -1.15 9.43 -39.58 -0.37 -1.52 16 24 C 0.07 0.95 5.68 -2.18 -0.01 0.94 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.98 6.84 -51.93 -0.36 0.63 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 32 H 0.09 1.29 7.67 -51.93 -0.40 0.89 16 33 H 0.05 0.78 8.00 -51.93 -0.42 0.37 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.11 1.29 8.00 -51.93 -0.42 0.87 16 36 H 0.12 1.10 6.55 -52.49 -0.34 0.76 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.12 1.15 7.92 -52.49 -0.42 0.74 16 41 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -30.62 339.62 -11.71 -42.33 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.87 Total: -1.45 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -4.51 Total: -27.30 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.43 Total: -35.58 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.62 -11.71 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931933395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.223 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds