Wall clock time and date at job start Mon Mar 30 2020 01:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.48561 * 110.99759 * 54.58261 * 12 11 10 14 14 C 1.54381 * 104.59554 * 159.04235 * 13 12 11 15 15 H 1.09001 * 118.15816 * 196.44330 * 14 13 12 16 16 C 1.52999 * 118.12731 * 39.51840 * 14 13 12 17 17 C 1.52997 * 60.54799 * 268.33446 * 16 14 13 18 18 C 1.50702 * 120.23396 * 248.54358 * 17 16 14 19 19 C 1.38232 * 119.99840 * 68.02923 * 18 17 16 20 20 C 1.38241 * 119.99879 * 179.76652 * 19 18 17 21 21 C 1.38233 * 119.99832 * 0.50096 * 20 19 18 22 22 C 1.38238 * 120.00200 * 359.75109 * 21 20 19 23 23 C 1.38233 * 120.00007 * 248.29672 * 18 17 16 24 24 C 1.48555 * 110.99917 * 170.00000 * 12 11 10 25 25 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 27 27 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 28 28 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 29 29 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 30 30 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 32 32 H 1.09006 * 110.41278 * 277.81600 * 13 12 11 33 33 H 1.08992 * 110.41412 * 40.26124 * 13 12 11 34 34 H 1.09003 * 117.44074 * 160.69041 * 16 14 13 35 35 H 1.08991 * 117.44654 * 15.98236 * 16 14 13 36 36 H 1.08000 * 119.99976 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.99896 * 180.22928 * 20 19 18 38 38 H 1.07997 * 120.00143 * 179.72416 * 21 20 19 39 39 H 1.07994 * 120.00351 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00208 * 0.02562 * 23 18 17 41 41 H 1.09001 * 110.41306 * 319.73767 * 24 12 11 42 42 H 1.08993 * 110.41560 * 82.06682 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 3.3927 -5.9858 1.1302 14 6 3.9386 -7.4162 1.3281 15 1 4.4487 -7.6473 2.2633 16 6 4.2303 -8.2558 0.0827 17 6 2.8533 -8.3439 0.7438 18 6 2.4278 -9.6080 1.4452 19 6 3.0569 -9.9954 2.6136 20 6 2.6634 -11.1525 3.2596 21 6 1.6478 -11.9276 2.7316 22 6 1.0222 -11.5429 1.5605 23 6 1.4122 -10.3831 0.9173 24 6 1.7430 -7.3958 0.2420 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0451 -0.8886 31 1 0.8541 -5.0445 0.8914 32 1 4.2019 -5.3024 0.8728 33 1 2.8794 -5.6469 2.0300 34 1 4.8982 -9.1095 0.1975 35 1 4.2969 -7.7329 -0.8713 36 1 3.8536 -9.3924 3.0235 37 1 3.1523 -11.4532 4.1743 38 1 1.3433 -12.8339 3.2339 39 1 0.2290 -12.1486 1.1478 40 1 0.9240 -10.0829 0.0020 41 1 0.9715 -7.2776 1.0029 42 1 1.3083 -7.7730 -0.6836 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931933395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:47 Heat of formation + Delta-G solvation = 34.201764 kcal Electronic energy + Delta-G solvation = -19841.843569 eV Core-core repulsion = 16979.308952 eV Total energy + Delta-G solvation = -2862.534617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54689 -39.50823 -36.86538 -35.12754 -32.90910 -32.00156 -31.51961 -29.15858 -28.54556 -26.00594 -24.18779 -23.46860 -23.23747 -22.13228 -20.68719 -20.09630 -18.58097 -18.03489 -16.87353 -16.69844 -16.42842 -15.72465 -15.65280 -15.26135 -15.16246 -14.70288 -14.43207 -14.21658 -14.09699 -13.87200 -13.51353 -13.36302 -13.21258 -12.87307 -12.70697 -12.47457 -12.21827 -12.13016 -11.92435 -11.90449 -11.57300 -11.38873 -11.25028 -11.10414 -10.66716 -10.56438 -9.80835 -9.52341 -9.45858 -8.21459 -6.32731 0.43377 0.51623 1.39250 1.40919 1.52046 2.39957 2.56052 2.90395 2.99650 3.11671 3.44120 3.61850 3.72578 4.01614 4.10604 4.16184 4.17355 4.24233 4.30155 4.45225 4.55507 4.58336 4.64964 4.67377 4.74388 4.78887 4.85192 4.90189 4.93921 4.96267 5.07741 5.12444 5.17424 5.19377 5.28851 5.49402 5.60311 5.64217 5.69883 5.72473 5.82677 5.84330 5.98412 6.13297 6.24621 6.83876 7.36610 8.90647 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.040070 B = 0.002964 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.601029 B = 9443.927897 C = 9670.617781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.090 4.090 11 C 0.058 3.942 12 N -0.515 5.515 13 C 0.056 3.944 14 C -0.159 4.159 15 H 0.133 0.867 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.046 4.046 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.126 4.126 24 C 0.071 3.929 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.011 1.011 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.042 0.958 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 -24.932 4.854 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.070 4.070 12 N -0.238 5.238 13 C -0.071 4.071 14 C -0.177 4.177 15 H 0.151 0.849 16 C -0.144 4.144 17 C -0.113 4.113 18 C -0.046 4.046 19 C -0.147 4.147 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.057 4.057 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.008 0.992 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.060 0.940 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.613 -24.787 4.336 26.018 hybrid contribution -0.608 1.267 0.714 1.576 sum 6.006 -23.520 5.050 24.795 Atomic orbital electron populations 1.70101 1.07836 1.27815 1.51706 1.26006 0.95794 1.03444 0.94676 0.85430 0.78658 0.78301 0.78572 1.19682 1.20647 1.18700 1.21679 0.93527 0.92340 1.50536 0.92227 1.18962 0.94365 0.93095 0.94708 1.21413 0.98024 0.92583 1.00768 1.22192 0.94035 0.90584 1.00209 1.65448 1.15167 1.01750 1.41458 1.22620 0.95868 0.96272 0.92369 1.23507 1.02982 0.91255 0.99971 0.84894 1.22942 0.94111 1.00648 0.96671 1.21014 0.90381 0.94437 1.05444 1.18901 0.96751 0.93897 0.95070 1.21204 1.00700 0.97695 0.95098 1.21422 0.97645 0.94621 1.00454 1.21485 0.96518 1.00614 0.96352 1.21428 1.00293 0.96546 0.95934 1.21147 0.97374 0.95352 1.00531 1.22520 0.94497 0.88477 1.00201 0.92732 0.98973 0.99243 0.92994 0.92796 0.91098 0.95574 0.89961 0.93829 0.86689 0.88553 0.85431 0.84090 0.83957 0.84204 0.85786 0.93981 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.43 4.97 29.84 0.15 1.58 16 10 C -0.09 -3.86 4.87 30.59 0.15 -3.71 16 11 C 0.06 2.11 5.06 86.30 0.44 2.54 16 12 N -0.51 -15.82 5.07 -881.50 -4.47 -20.29 16 13 C 0.06 1.59 5.01 86.45 0.43 2.02 16 14 C -0.16 -3.52 6.49 -9.90 -0.06 -3.58 16 15 H 0.13 2.44 6.95 -2.39 -0.02 2.42 16 16 C -0.11 -2.21 9.70 30.59 0.30 -1.91 16 17 C -0.11 -2.52 2.75 -52.03 -0.14 -2.67 16 18 C -0.05 -0.96 5.53 -19.87 -0.11 -1.07 16 19 C -0.13 -2.39 9.51 22.27 0.21 -2.18 16 20 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 21 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 22 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 23 C -0.13 -2.46 9.43 22.27 0.21 -2.25 16 24 C 0.07 1.87 5.68 86.45 0.49 2.36 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H 0.05 2.16 6.84 -2.39 -0.02 2.15 16 29 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.03 0.97 7.88 -2.39 -0.02 0.95 16 32 H 0.08 2.39 7.67 -2.38 -0.02 2.37 16 33 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 34 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 2.22 8.00 -2.39 -0.02 2.20 16 36 H 0.13 2.07 6.55 -2.91 -0.02 2.05 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.12 2.26 7.92 -2.91 -0.02 2.24 16 41 H 0.04 1.18 7.82 -2.39 -0.02 1.16 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -65.83 339.62 2.24 -63.59 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.97 Total: 12.52 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 3.43 Total: -45.18 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -4.19 Total: -77.88 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.83 2.24 -63.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931933395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.795 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds