Wall clock time and date at job start Mon Mar 30 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47191 * 275.10736 * 3 2 1 5 5 C 1.46899 * 110.99696 * 202.44488 * 4 3 2 6 6 C 1.50705 * 109.46750 * 162.44745 * 5 4 3 7 7 C 1.38636 * 119.74918 * 292.42714 * 6 5 4 8 8 C 1.37619 * 120.24679 * 179.72111 * 7 6 5 9 9 C 1.40722 * 119.74420 * 0.56985 * 8 7 6 10 10 C 1.41392 * 120.24233 * 179.68288 * 9 8 7 11 11 H 1.08002 * 119.99677 * 166.03956 * 10 9 8 12 12 C 1.39943 * 120.00167 * 346.03487 * 10 9 8 13 13 N 1.30817 * 120.00339 * 323.69960 * 12 10 9 14 14 Si 1.86805 * 119.99881 * 143.69492 * 12 10 9 15 15 H 1.48508 * 109.46700 * 94.99677 * 14 12 10 16 16 H 1.48500 * 109.47325 * 214.99509 * 14 12 10 17 17 H 1.48498 * 109.47274 * 334.99873 * 14 12 10 18 18 C 1.40713 * 119.51109 * 359.70387 * 9 8 7 19 19 C 1.37625 * 119.74627 * 0.02562 * 18 9 8 20 20 C 1.46899 * 110.99941 * 78.49181 * 4 3 2 21 21 C 1.52999 * 109.47380 * 81.26882 * 20 4 3 22 22 C 1.52995 * 109.47028 * 201.26921 * 20 4 3 23 23 C 1.52998 * 109.47446 * 321.26709 * 20 4 3 24 24 H 4.40893 * 5.52075 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47296 * 155.10379 * 3 2 1 26 26 H 1.09005 * 109.47216 * 35.10596 * 3 2 1 27 27 H 1.08999 * 109.47251 * 282.44625 * 5 4 3 28 28 H 1.08997 * 109.47015 * 42.44906 * 5 4 3 29 29 H 1.07998 * 119.87416 * 359.97438 * 7 6 5 30 30 H 1.07999 * 120.12724 * 180.27840 * 8 7 6 31 31 H 0.96997 * 120.00581 * 179.97438 * 13 12 10 32 32 H 1.07997 * 120.13124 * 179.97438 * 18 9 8 33 33 H 1.07994 * 119.87763 * 180.02562 * 19 18 9 34 34 H 1.09002 * 109.47236 * 72.09289 * 21 20 4 35 35 H 1.09000 * 109.47429 * 192.09607 * 21 20 4 36 36 H 1.09006 * 109.47030 * 312.09934 * 21 20 4 37 37 H 1.09001 * 109.47342 * 57.10097 * 22 20 4 38 38 H 1.09000 * 109.47291 * 177.10544 * 22 20 4 39 39 H 1.09000 * 109.47336 * 297.09871 * 22 20 4 40 40 H 1.09007 * 109.47119 * 63.08130 * 23 20 4 41 41 H 1.08997 * 109.47482 * 183.08471 * 23 20 4 42 42 H 1.09006 * 109.47314 * 303.08833 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1358 -0.1224 1.3795 5 6 4.5060 0.3932 1.4996 6 6 4.8189 0.6549 2.9504 7 6 4.1591 1.6713 3.6238 8 6 4.4326 1.9156 4.9503 9 6 5.3948 1.1368 5.6196 10 6 5.6890 1.3830 6.9805 11 1 6.2489 0.6573 7.5517 12 6 5.2547 2.5670 7.5871 13 7 5.2410 3.6840 6.9064 14 14 4.6944 2.5523 9.3691 15 1 5.8288 2.9355 10.2477 16 1 3.5822 3.5201 9.5464 17 1 4.2272 1.1897 9.7300 18 6 6.0624 0.1116 4.9243 19 6 5.7687 -0.1185 3.5996 20 6 3.0539 -1.5133 1.8451 21 6 4.2599 -2.2974 1.3239 22 6 3.0508 -1.5397 3.3748 23 6 1.7657 -2.1515 1.3215 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.9330 -0.4326 26 1 3.0097 -0.8399 -0.5910 27 1 5.2068 -0.3419 1.1036 28 1 4.5957 1.3214 0.9353 29 1 3.4247 2.2711 3.1067 30 1 3.9143 2.7049 5.4742 31 1 4.9396 4.5045 7.3267 32 1 6.8029 -0.4919 5.4281 33 1 6.2795 -0.9051 3.0641 34 1 5.1560 -1.9841 1.8596 35 1 4.0961 -3.3634 1.4820 36 1 4.3868 -2.1032 0.2588 37 1 2.2213 -0.9384 3.7469 38 1 2.9383 -2.5673 3.7202 39 1 3.9907 -1.1321 3.7471 40 1 1.7922 -2.1823 0.2321 41 1 1.6779 -3.1654 1.7116 42 1 0.9092 -1.5612 1.6474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932461459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:22 Heat of formation + Delta-G solvation = 85.364538 kcal Electronic energy + Delta-G solvation = -21053.592188 eV Core-core repulsion = 18193.276155 eV Total energy + Delta-G solvation = -2860.316033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.51018 -37.19152 -34.03068 -33.36936 -32.26109 -30.23686 -29.26461 -27.69989 -26.91110 -26.18068 -24.98713 -22.95217 -20.93587 -20.10164 -18.56086 -17.71122 -17.31861 -15.94178 -15.31264 -15.07179 -14.82416 -14.06493 -13.94161 -13.59599 -13.37877 -12.92068 -12.67484 -12.53882 -12.30815 -11.93892 -11.80939 -11.61001 -11.45407 -11.42538 -11.12335 -11.03219 -10.97762 -10.67454 -10.60782 -10.44283 -10.06652 -9.97809 -9.66877 -9.55530 -9.34111 -8.84854 -7.86675 -7.40916 -7.28136 -6.93430 -4.26096 2.72136 2.92210 3.03605 3.05946 3.09844 3.13401 3.29087 3.89815 4.31526 4.56154 4.63795 5.17754 5.23635 5.42699 5.48782 5.55762 5.71151 5.73913 5.84773 5.89989 5.96318 6.01988 6.10429 6.24679 6.27562 6.32020 6.39951 6.42416 6.50460 6.51970 6.73253 6.99977 7.04237 7.13280 7.31589 7.39614 7.51839 7.55189 7.65391 7.81910 7.95410 8.07654 8.24606 8.31314 8.65546 8.90257 9.03053 10.00359 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.004733 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.712214 B = 5913.889274 C = 6154.914703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.149 4.149 3 C 0.152 3.848 4 N -0.518 5.518 5 C 0.113 3.887 6 C -0.214 4.214 7 C -0.062 4.062 8 C -0.193 4.193 9 C 0.115 3.885 10 C -0.470 4.470 11 H 0.080 0.920 12 C 0.093 3.907 13 N -0.760 5.760 14 Si 0.891 3.109 15 H -0.270 1.270 16 H -0.274 1.274 17 H -0.257 1.257 18 C -0.239 4.239 19 C -0.077 4.077 20 C 0.114 3.886 21 C -0.178 4.178 22 C -0.152 4.152 23 C -0.149 4.149 24 H 0.212 0.788 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.283 0.717 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 -6.340 -9.275 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.150 4.150 3 C 0.025 3.975 4 N -0.242 5.242 5 C -0.013 4.013 6 C -0.216 4.216 7 C -0.081 4.081 8 C -0.212 4.212 9 C 0.113 3.887 10 C -0.497 4.497 11 H 0.098 0.902 12 C -0.130 4.130 13 N -0.382 5.382 14 Si 0.715 3.285 15 H -0.195 1.195 16 H -0.199 1.199 17 H -0.181 1.181 18 C -0.259 4.259 19 C -0.095 4.095 20 C 0.025 3.975 21 C -0.237 4.237 22 C -0.209 4.209 23 C -0.206 4.206 24 H 0.229 0.771 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.177 -5.787 -8.984 11.875 hybrid contribution -0.029 -0.359 0.308 0.474 sum -5.206 -6.145 -8.676 11.838 Atomic orbital electron populations 1.24704 0.95748 1.03029 1.01171 1.22902 0.94217 0.98553 0.99332 1.19079 0.85336 1.01447 0.91636 1.62331 1.24150 1.19567 1.18171 1.20896 0.86537 0.97718 0.96110 1.18648 1.05594 1.03106 0.94238 1.20353 0.97236 0.96041 0.94432 1.21111 1.02059 1.03793 0.94269 1.17510 0.89108 0.89907 0.92188 1.19548 1.31832 1.02650 0.95650 0.90227 1.25946 0.92353 0.94445 1.00296 1.69966 1.29484 0.99381 1.39411 0.86587 0.79394 0.79831 0.82735 1.19478 1.19857 1.18052 1.20764 1.05610 1.05096 0.94423 1.20269 0.97142 0.97502 0.94608 1.20961 0.93524 0.86308 0.96722 1.22516 1.00425 1.00407 1.00336 1.22241 1.05898 0.99926 0.92800 1.22275 0.98197 1.00007 1.00113 0.77129 0.89219 0.92658 0.94403 0.92047 0.89627 0.87599 0.90591 0.89402 0.89951 0.91137 0.92679 0.93452 0.92689 0.94264 0.88296 0.93031 0.92984 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.87 18.29 29.55 0.54 -2.33 16 2 C -0.15 -2.09 10.16 -37.12 -0.38 -2.47 16 3 C 0.15 2.07 5.01 -6.61 -0.03 2.04 16 4 N -0.52 -8.34 4.24 -223.87 -0.95 -9.29 16 5 C 0.11 1.93 4.76 -4.97 -0.02 1.90 16 6 C -0.21 -4.45 3.39 -104.33 -0.35 -4.80 16 7 C -0.06 -1.43 9.66 -39.66 -0.38 -1.81 16 8 C -0.19 -4.97 8.86 -38.87 -0.34 -5.32 16 9 C 0.12 3.03 5.65 -106.82 -0.60 2.43 16 10 C -0.47 -12.36 8.95 -37.74 -0.34 -12.70 16 11 H 0.08 2.03 8.04 -52.49 -0.42 1.61 16 12 C 0.09 2.29 4.78 -17.35 -0.08 2.21 16 13 N -0.76 -19.31 11.54 55.55 0.64 -18.67 16 14 Si 0.89 18.27 29.68 -169.99 -5.04 13.22 16 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 C -0.24 -5.75 9.79 -38.87 -0.38 -6.13 16 19 C -0.08 -1.63 6.91 -39.66 -0.27 -1.90 16 20 C 0.11 1.75 0.71 -131.61 -0.09 1.65 16 21 C -0.18 -2.46 7.16 37.16 0.27 -2.20 16 22 C -0.15 -2.69 8.05 37.15 0.30 -2.39 16 23 C -0.15 -2.05 6.83 37.16 0.25 -1.79 16 24 H 0.21 1.93 7.80 -54.09 -0.42 1.51 16 25 H 0.09 1.13 7.57 -51.93 -0.39 0.73 16 26 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 27 H 0.04 0.60 5.26 -51.93 -0.27 0.33 16 28 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 29 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.11 2.84 6.14 -52.49 -0.32 2.52 16 31 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 32 H 0.09 2.02 8.06 -52.49 -0.42 1.59 16 33 H 0.08 1.56 6.62 -52.49 -0.35 1.22 16 34 H 0.07 1.05 4.93 -51.93 -0.26 0.80 16 35 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.05 0.60 6.83 -51.93 -0.35 0.24 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.97 3.58 -51.93 -0.19 1.79 16 40 H 0.05 0.66 5.86 -51.93 -0.30 0.36 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.00 6.23 -51.93 -0.32 0.68 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -26.75 325.25 -8.36 -35.11 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -5.99 Total: 8.32 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: -1.93 Total: -33.60 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: -0.31 Total: -27.96 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.04 Total: 13.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.75 -8.36 -35.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932461459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.475 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds