Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.81095 * 2 1 4 4 C 1.53010 * 109.64687 * 239.48610 * 2 1 3 5 5 C 1.50072 * 110.15155 * 190.89627 * 4 2 1 6 6 C 1.29447 * 124.07493 * 17.09796 * 5 4 2 7 7 C 1.50063 * 124.07565 * 359.54858 * 6 5 4 8 8 C 1.53025 * 110.14809 * 17.13303 * 7 6 5 9 9 H 1.08998 * 109.64044 * 70.45916 * 8 7 6 10 10 N 1.46903 * 109.63883 * 190.87825 * 8 7 6 11 11 C 1.46894 * 111.00048 * 274.99634 * 10 8 7 12 12 C 1.50704 * 109.47239 * 180.02562 * 11 10 8 13 13 C 1.38640 * 119.74647 * 90.00355 * 12 11 10 14 14 C 1.37611 * 120.24585 * 179.97438 * 13 12 11 15 15 C 1.40719 * 119.74795 * 359.97438 * 14 13 12 16 16 C 1.41394 * 120.24454 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99899 * 330.23302 * 16 15 14 18 18 C 1.39949 * 120.00013 * 150.23027 * 16 15 14 19 19 N 1.30820 * 119.99755 * 161.72722 * 18 16 15 20 20 Si 1.86797 * 119.99659 * 341.73293 * 18 16 15 21 21 H 1.48499 * 109.47212 * 95.40867 * 20 18 16 22 22 H 1.48500 * 109.47145 * 215.40722 * 20 18 16 23 23 H 1.48501 * 109.47423 * 335.40943 * 20 18 16 24 24 C 1.40711 * 119.50920 * 359.97438 * 15 14 13 25 25 C 1.37620 * 119.74567 * 0.03855 * 24 15 14 26 26 H 1.09000 * 109.47210 * 299.47781 * 1 2 3 27 27 H 1.09002 * 109.46900 * 59.47315 * 1 2 3 28 28 H 1.09004 * 109.46978 * 179.47632 * 1 2 3 29 29 H 1.08996 * 109.36538 * 70.68439 * 4 2 1 30 30 H 1.08999 * 109.34094 * 311.09828 * 4 2 1 31 31 H 1.07999 * 117.95811 * 197.11157 * 5 4 2 32 32 H 1.08000 * 117.95601 * 179.52697 * 6 5 4 33 33 H 1.09000 * 109.35704 * 256.92485 * 7 6 5 34 34 H 1.09003 * 109.35856 * 137.33695 * 7 6 5 35 35 H 1.00893 * 111.00126 * 38.95933 * 10 8 7 36 36 H 1.09001 * 109.47108 * 60.00553 * 11 10 8 37 37 H 1.09001 * 109.47855 * 300.00506 * 11 10 8 38 38 H 1.08000 * 119.87424 * 359.95430 * 13 12 11 39 39 H 1.08007 * 120.12674 * 179.72676 * 14 13 12 40 40 H 0.97009 * 119.99285 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.12760 * 179.97438 * 24 15 14 42 42 H 1.08006 * 119.87466 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8995 1.0255 0.0000 4 6 2.0445 -0.7317 -1.2414 5 6 3.5212 -0.9722 -1.1250 6 6 4.1818 -0.9035 -0.0139 7 6 3.5650 -0.5643 1.3114 8 6 2.0456 -0.7337 1.2445 9 1 1.7977 -1.7931 1.1781 10 7 1.4310 -0.1572 2.4478 11 6 1.4255 -1.1261 3.5519 12 6 0.7884 -0.5006 4.7660 13 6 -0.5791 -0.6170 4.9622 14 6 -1.1715 -0.0503 6.0674 15 6 -0.3837 0.6488 7.0005 16 6 -0.9815 1.2357 8.1396 17 1 -2.0034 1.5824 8.0950 18 6 -0.2491 1.3671 9.3249 19 7 -0.6440 2.2056 10.2482 20 14 1.2923 0.3453 9.5884 21 1 2.4845 1.1365 9.1912 22 1 1.4004 -0.0268 11.0220 23 1 1.2174 -0.8860 8.7616 24 6 1.0034 0.7596 6.7916 25 6 1.5744 0.1852 5.6790 26 1 -0.3633 0.5057 0.8946 27 1 -0.3633 0.5220 -0.8852 28 1 -0.3633 -1.0277 -0.0094 29 1 1.8457 -0.1266 -2.1259 30 1 1.5292 -1.6874 -1.3366 31 1 4.0667 -1.2176 -2.0242 32 1 5.2428 -1.1031 -0.0425 33 1 3.8025 0.4684 1.5667 34 1 3.9688 -1.2259 2.0778 35 1 1.8963 0.6963 2.7179 36 1 2.4500 -1.4149 3.7869 37 1 0.8575 -2.0088 3.2580 38 1 -1.1817 -1.1541 4.2447 39 1 -2.2376 -0.1384 6.2161 40 1 -0.1360 2.2969 11.0696 41 1 1.6175 1.2944 7.5012 42 1 2.6388 0.2693 5.5164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934620260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 0.126706 kcal Electronic energy + Delta-G solvation = -20139.271327 eV Core-core repulsion = 17275.259105 eV Total energy + Delta-G solvation = -2864.012223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30613 -39.52705 -36.35731 -35.19473 -33.50040 -32.58939 -31.46411 -30.12657 -27.80138 -26.91641 -24.73134 -23.28909 -23.24048 -21.80408 -21.49761 -19.34448 -19.00858 -17.53728 -16.97731 -16.24030 -16.04668 -15.65496 -15.55301 -15.26705 -15.16511 -14.63698 -14.40425 -14.17082 -14.04043 -13.76860 -13.48936 -13.15361 -12.99940 -12.85346 -12.79829 -12.58621 -12.55684 -12.41965 -11.98701 -11.64249 -11.47057 -11.45689 -11.34253 -11.13015 -10.91614 -9.86090 -9.49316 -9.37012 -9.08266 -8.89411 -6.48140 0.77725 0.91701 1.25306 1.39885 1.42994 1.48551 2.12332 2.57451 3.32763 3.63879 3.82779 3.89030 4.07300 4.23811 4.24899 4.33381 4.42824 4.46506 4.53923 4.60107 4.63119 4.69243 4.77209 4.85848 4.93437 4.96795 5.01687 5.07296 5.08749 5.13363 5.23684 5.28429 5.35319 5.50166 5.61632 5.64985 5.76963 5.81219 5.93415 6.07223 6.09702 6.26839 6.29578 6.44788 6.57413 6.77126 6.86213 8.19726 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.035090 B = 0.003745 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.753121 B = 7474.643093 C = 7972.096616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 H 0.061 0.939 4 C -0.086 4.086 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.119 4.119 8 C 0.095 3.905 9 H 0.074 0.926 10 N -0.680 5.680 11 C 0.130 3.870 12 C -0.188 4.188 13 C -0.060 4.060 14 C -0.224 4.224 15 C 0.073 3.927 16 C -0.490 4.490 17 H 0.053 0.947 18 C 0.046 3.954 19 N -0.854 5.854 20 Si 0.968 3.032 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.254 1.254 24 C -0.249 4.249 25 C -0.075 4.075 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.339 0.661 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.293 0.707 41 H 0.094 0.906 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.741 -7.328 -19.803 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.123 4.123 5 C -0.174 4.174 6 C -0.182 4.182 7 C -0.158 4.158 8 C -0.015 4.015 9 H 0.092 0.908 10 N -0.310 5.310 11 C 0.002 3.998 12 C -0.189 4.189 13 C -0.079 4.079 14 C -0.244 4.244 15 C 0.070 3.930 16 C -0.520 4.520 17 H 0.071 0.929 18 C -0.167 4.167 19 N -0.481 5.481 20 Si 0.792 3.208 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.177 1.177 24 C -0.268 4.268 25 C -0.094 4.094 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.054 -7.339 -19.742 22.926 hybrid contribution 1.093 0.178 1.127 1.580 sum 10.147 -7.161 -18.615 22.378 Atomic orbital electron populations 1.21605 0.94548 1.01365 1.01341 1.21113 0.96154 0.98861 0.93420 0.92004 1.20560 0.92878 1.00934 0.97937 1.22261 0.96500 1.00571 0.98111 1.22052 1.00035 1.01928 0.94188 1.21187 0.96571 1.01646 0.96374 1.21665 0.90869 0.98599 0.90363 0.90810 1.60646 1.58889 1.07032 1.04420 1.20512 0.97659 0.94060 0.87604 1.19464 0.93546 1.07352 0.98550 1.20782 0.94521 0.97322 0.95263 1.21215 0.98857 1.05298 0.99011 1.17869 0.92488 0.89641 0.92982 1.19494 1.00095 1.36140 0.96275 0.92913 1.26826 1.00995 0.93994 0.94920 1.69737 1.40597 1.29311 1.08456 0.85447 0.77831 0.80507 0.77023 1.18422 1.20497 1.17734 1.21090 0.95176 1.09486 1.01094 1.20793 0.98816 0.96174 0.93574 0.92810 0.92809 0.93313 0.89946 0.90407 0.86648 0.87363 0.91064 0.91459 0.84271 0.94784 0.90880 0.86098 0.88465 0.89700 0.88870 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.96 71.98 0.64 -2.00 16 2 C -0.08 -1.45 2.55 -10.66 -0.03 -1.47 16 3 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 4 C -0.09 -1.31 5.44 29.65 0.16 -1.15 16 5 C -0.16 -2.41 9.80 27.04 0.27 -2.14 16 6 C -0.16 -2.74 9.80 27.03 0.27 -2.48 16 7 C -0.12 -2.24 5.41 29.66 0.16 -2.08 16 8 C 0.09 1.96 2.05 45.05 0.09 2.05 16 9 H 0.07 1.58 7.80 -2.39 -0.02 1.56 16 10 N -0.68 -17.13 5.23 -494.85 -2.59 -19.72 16 11 C 0.13 3.61 5.61 85.56 0.48 4.09 16 12 C -0.19 -6.85 5.42 -19.67 -0.11 -6.96 16 13 C -0.06 -2.39 9.67 22.22 0.21 -2.18 16 14 C -0.22 -10.54 9.80 22.73 0.22 -10.32 16 15 C 0.07 3.78 5.11 -21.29 -0.11 3.67 16 16 C -0.49 -28.32 9.57 23.46 0.22 -28.10 16 17 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 18 C 0.05 2.55 5.40 85.26 0.46 3.01 16 19 N -0.85 -48.08 13.93 21.83 0.30 -47.78 16 20 Si 0.97 43.76 24.52 68.60 1.68 45.44 16 21 H -0.26 -11.02 6.71 99.48 0.67 -10.36 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.25 -11.67 6.86 99.48 0.68 -10.99 16 24 C -0.25 -11.82 7.18 22.73 0.16 -11.66 16 25 C -0.08 -2.98 9.67 22.22 0.21 -2.76 16 26 H 0.05 1.33 7.46 -2.39 -0.02 1.31 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.12 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.07 1.38 7.91 -2.39 -0.02 1.36 16 34 H 0.07 1.28 7.77 -2.39 -0.02 1.26 16 35 H 0.34 8.80 8.33 -89.70 -0.75 8.05 16 36 H 0.03 0.88 7.62 -2.39 -0.02 0.86 16 37 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 38 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.29 14.77 8.30 -92.70 -0.77 14.00 16 41 H 0.09 4.46 4.73 -2.91 -0.01 4.44 16 42 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -59.05 332.70 2.90 -56.15 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.18 Total: 26.38 kcal Atomic # 6 Polarization: -63.80 SS G_CDS: 3.33 Total: -60.48 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -2.29 Total: -67.49 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.68 Total: 45.44 kcal Total: -59.05 2.90 -56.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934620260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.275 kcal (2) G-P(sol) polarization free energy of solvation -59.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds