Wall clock time and date at job start Mon Mar 30 2020 01:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38369 * 119.92564 * 2 1 4 4 C 1.38325 * 120.28464 * 180.02562 * 3 2 1 5 5 C 1.37994 * 120.14036 * 0.02562 * 4 3 2 6 6 C 1.39520 * 119.85694 * 359.97438 * 5 4 3 7 7 C 1.47812 * 120.13723 * 179.97438 * 6 5 4 8 8 C 1.31482 * 118.65841 * 104.98342 * 7 6 5 9 9 C 1.50168 * 123.05557 * 180.31614 * 8 7 6 10 10 N 1.46836 * 110.25728 * 342.95934 * 9 8 7 11 11 C 1.46901 * 111.00173 * 174.59401 * 10 9 8 12 12 C 1.50706 * 109.47055 * 46.98937 * 11 10 9 13 13 H 1.07995 * 120.00033 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99973 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99959 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00011 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46935 * 90.00555 * 16 14 12 18 18 H 1.48505 * 109.46970 * 210.00404 * 16 14 12 19 19 H 1.48496 * 109.47069 * 330.00355 * 16 14 12 20 20 C 1.47216 * 110.26573 * 51.16000 * 10 9 8 21 21 C 1.50330 * 118.66041 * 284.99687 * 7 6 5 22 22 C 1.37947 * 119.93030 * 180.27168 * 2 1 3 23 23 C 1.50709 * 120.07646 * 0.02562 * 22 2 1 24 24 H 1.09005 * 109.46832 * 90.00372 * 1 2 3 25 25 H 1.09000 * 109.47154 * 209.99659 * 1 2 3 26 26 H 1.08992 * 109.47632 * 330.00215 * 1 2 3 27 27 H 1.07993 * 119.85683 * 0.04428 * 3 2 1 28 28 H 1.07999 * 119.92681 * 180.02562 * 4 3 2 29 29 H 1.08005 * 120.07261 * 180.02562 * 5 4 3 30 30 H 1.07997 * 118.46977 * 0.33106 * 8 7 6 31 31 H 1.08996 * 109.34544 * 103.18172 * 9 8 7 32 32 H 1.09006 * 109.34154 * 222.86478 * 9 8 7 33 33 H 1.08995 * 109.47259 * 166.98904 * 11 10 9 34 34 H 1.09004 * 109.46948 * 286.99574 * 11 10 9 35 35 H 0.96996 * 119.99821 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.62446 * 170.99774 * 20 10 9 37 37 H 1.09001 * 109.62229 * 50.42311 * 20 10 9 38 38 H 1.08999 * 109.43429 * 43.40862 * 21 7 6 39 39 H 1.08993 * 109.39692 * 283.52495 * 21 7 6 40 40 H 1.08994 * 109.46289 * 270.21202 * 23 22 2 41 41 H 1.09001 * 109.46494 * 30.20645 * 23 22 2 42 42 H 1.08998 * 109.47412 * 150.20759 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5805 1.2079 -0.0005 5 6 4.2809 0.0189 -0.0016 6 6 3.5908 -1.1937 -0.0016 7 6 4.3348 -2.4710 -0.0033 8 6 4.3957 -3.1667 1.1107 9 6 5.1295 -4.4722 1.2220 10 7 5.3880 -5.0255 -0.1134 11 6 6.2159 -6.2362 -0.0303 12 6 5.6680 -7.1471 1.0381 13 1 4.7922 -6.8559 1.5989 14 6 6.2843 -8.3526 1.2987 15 7 7.3505 -8.7074 0.6154 16 14 5.6048 -9.4819 2.6225 17 1 4.6079 -10.4044 2.0221 18 1 6.7136 -10.2704 3.2174 19 1 4.9527 -8.6686 3.6800 20 6 6.0215 -4.0111 -0.9718 21 6 4.9911 -2.9214 -1.2786 22 6 2.1953 -1.1955 -0.0057 23 6 1.4419 -2.5007 -0.0124 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5137 27 1 1.6538 2.1324 0.0007 28 1 4.1135 2.1472 -0.0001 29 1 5.3609 0.0269 -0.0016 30 1 3.8945 -2.7815 1.9863 31 1 6.0774 -4.3110 1.7353 32 1 4.5257 -5.1782 1.7922 33 1 6.2019 -6.7525 -0.9901 34 1 7.2404 -5.9594 0.2186 35 1 7.7843 -9.5553 0.7990 36 1 6.3532 -4.4736 -1.9014 37 1 6.8741 -3.5731 -0.4528 38 1 5.4892 -2.0737 -1.7491 39 1 4.2340 -3.3182 -1.9548 40 1 1.2567 -2.8185 1.0136 41 1 0.4913 -2.3688 -0.5292 42 1 2.0328 -3.2587 -0.5266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934845751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:14 Heat of formation + Delta-G solvation = 29.386326 kcal Electronic energy + Delta-G solvation = -20378.413030 eV Core-core repulsion = 17515.669600 eV Total energy + Delta-G solvation = -2862.743430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83361 -38.00020 -34.37589 -33.33500 -32.53039 -30.71585 -30.23945 -27.77879 -26.65539 -26.23358 -24.32728 -22.63396 -21.62231 -20.73319 -20.44335 -17.26104 -16.34241 -16.24447 -15.69076 -15.43760 -14.61331 -14.46345 -14.08085 -13.79148 -13.68755 -13.04261 -12.95727 -12.82743 -12.78132 -12.50561 -12.21948 -12.07007 -11.90882 -11.79511 -11.59834 -11.22259 -11.17666 -10.90012 -10.81984 -10.64304 -10.54251 -10.08252 -9.68787 -9.04844 -8.69476 -8.51615 -8.48706 -8.20769 -7.19376 -6.05575 -4.07536 1.33451 1.40353 2.52980 3.30735 3.36782 3.39604 3.73614 4.40857 4.76611 4.79820 4.91285 5.00588 5.06526 5.22200 5.29246 5.31310 5.34037 5.47944 5.57367 5.67157 5.72926 5.77089 5.79935 5.83169 5.92239 6.00780 6.03478 6.13853 6.30773 6.34020 6.43084 6.46243 6.51665 6.56335 6.65065 6.72711 6.89669 7.08309 7.27418 7.32780 7.44829 7.75269 8.03857 8.22461 8.54360 9.00204 9.57375 11.05771 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.003948 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.254660 B = 7090.418337 C = 7615.004518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.114 4.114 6 C -0.034 4.034 7 C -0.099 4.099 8 C -0.126 4.126 9 C 0.091 3.909 10 N -0.532 5.532 11 C 0.191 3.809 12 C -0.518 4.518 13 H 0.066 0.934 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.051 3.949 21 C -0.065 4.065 22 C -0.073 4.073 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.034 0.966 34 H -0.009 1.009 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 18.156 -1.649 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.132 4.132 6 C -0.035 4.035 7 C -0.099 4.099 8 C -0.144 4.144 9 C -0.037 4.037 10 N -0.257 5.257 11 C 0.065 3.935 12 C -0.556 4.556 13 H 0.084 0.916 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.077 4.077 21 C -0.103 4.103 22 C -0.073 4.073 23 C -0.173 4.173 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.052 0.948 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.070 17.860 -1.878 20.589 hybrid contribution 0.604 -0.348 1.085 1.290 sum -9.466 17.512 -0.793 19.922 Atomic orbital electron populations 1.20803 0.91480 1.02630 1.02137 1.19688 0.95817 0.92613 1.00986 1.20971 0.94237 0.97130 1.02065 1.20986 0.94186 0.97767 1.01328 1.21225 0.99730 0.91612 1.00618 1.19016 0.92258 0.93242 0.98935 1.19587 1.00792 0.93356 0.96213 1.22794 0.98846 0.96006 0.96764 1.20898 0.98233 0.92116 0.92433 1.62550 1.47612 1.05363 1.10129 1.19758 0.90277 0.85594 0.97821 1.21289 1.12716 1.02754 1.18850 0.91602 1.24994 0.94940 0.97905 0.96586 1.69964 1.20058 1.22584 1.40938 0.86516 0.78511 0.80744 0.81769 1.20568 1.21285 1.19834 1.22101 0.94423 0.93052 0.98171 1.20392 0.98013 0.97288 0.94578 1.19931 0.92761 0.94949 0.99659 1.20846 0.99597 0.94432 1.02456 0.91364 0.91274 0.91869 0.86569 0.86393 0.86196 0.88080 0.94237 0.88645 0.94843 0.99109 0.92882 0.91125 0.95625 0.91889 0.90730 0.91259 0.91863 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.18 36.01 0.33 -0.68 16 2 C -0.09 -1.06 5.87 -104.68 -0.61 -1.67 16 3 C -0.13 -1.38 9.69 -39.50 -0.38 -1.76 16 4 C -0.12 -1.40 10.03 -39.64 -0.40 -1.80 16 5 C -0.11 -1.46 9.79 -39.19 -0.38 -1.84 16 6 C -0.03 -0.49 5.11 -105.01 -0.54 -1.02 16 7 C -0.10 -1.55 3.87 -102.72 -0.40 -1.95 16 8 C -0.13 -2.11 9.26 -36.40 -0.34 -2.44 16 9 C 0.09 1.82 5.01 -5.27 -0.03 1.79 16 10 N -0.53 -11.58 4.85 -237.57 -1.15 -12.74 16 11 C 0.19 4.98 4.96 -4.97 -0.02 4.95 16 12 C -0.52 -14.36 8.51 -34.44 -0.29 -14.65 16 13 H 0.07 1.78 5.82 -52.49 -0.31 1.47 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 16 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.05 0.95 5.55 -3.61 -0.02 0.93 16 21 C -0.07 -1.02 6.03 -28.02 -0.17 -1.19 16 22 C -0.07 -0.97 5.91 -104.23 -0.62 -1.58 16 23 C -0.12 -1.46 8.53 36.01 0.31 -1.15 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.59 6.71 -51.93 -0.35 0.24 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 30 H 0.10 1.56 7.98 -52.49 -0.42 1.15 16 31 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.10 2.02 6.04 -51.93 -0.31 1.71 16 33 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 34 H -0.01 -0.25 8.08 -51.93 -0.42 -0.67 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 37 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.67 6.71 -51.93 -0.35 0.32 16 42 H 0.08 1.11 7.08 -51.93 -0.37 0.74 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -29.69 335.70 -10.75 -40.45 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.72 Total: -0.83 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.66 Total: -22.54 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.42 Total: -38.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.69 -10.75 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934845751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.834 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds