Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99635 * 2 1 4 4 H 1.48505 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47093 * 299.99947 * 3 2 1 6 6 H 1.48503 * 109.47239 * 60.00228 * 3 2 1 7 7 C 1.38811 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99670 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00268 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 N 1.46896 * 109.47255 * 179.97438 * 16 15 13 18 18 C 1.47011 * 111.00147 * 293.63572 * 17 16 15 19 19 C 1.53094 * 109.25974 * 177.60789 * 18 17 16 20 20 O 1.43021 * 109.25896 * 56.84664 * 19 18 17 21 21 C 1.43018 * 113.73452 * 301.32819 * 20 19 18 22 22 C 1.47014 * 111.00110 * 169.99532 * 17 16 15 23 23 H 0.97004 * 120.00691 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00254 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.47134 * 59.99418 * 10 9 7 26 26 H 1.09005 * 109.46544 * 299.99525 * 10 9 7 27 27 H 1.08998 * 109.47382 * 59.99561 * 11 10 9 28 28 H 1.09002 * 109.47216 * 299.99998 * 11 10 9 29 29 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 33 33 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 34 34 H 1.09000 * 109.50332 * 297.54157 * 18 17 16 35 35 H 1.08997 * 109.50991 * 57.67014 * 18 17 16 36 36 H 1.09001 * 109.50572 * 296.91080 * 19 18 17 37 37 H 1.09001 * 109.54430 * 176.80128 * 19 18 17 38 38 H 1.08991 * 109.50838 * 298.73244 * 21 20 19 39 39 H 1.09003 * 109.53416 * 178.62445 * 21 20 19 40 40 H 1.09003 * 109.50880 * 302.33143 * 22 17 16 41 41 H 1.09008 * 109.50352 * 62.41683 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 7 1.7965 -6.0884 -0.0006 13 6 1.1227 -7.2556 -0.0015 14 8 -0.0902 -7.2556 -0.0024 15 6 1.8762 -8.5607 0.0054 16 6 0.8821 -9.7236 0.0097 17 7 1.6166 -10.9958 0.0158 18 6 2.3575 -11.1824 -1.2401 19 6 3.1538 -12.4879 -1.1674 20 8 2.2597 -13.5716 -0.9001 21 6 1.5222 -13.4228 0.3162 22 6 0.7093 -12.1268 0.2585 23 1 -0.4851 0.8400 -0.0004 24 1 0.3556 -2.3881 -0.0005 25 1 2.6849 -3.7144 0.8894 26 1 2.6847 -3.7144 -0.8906 27 1 0.4376 -4.7618 -0.8913 28 1 0.4370 -4.7622 0.8886 29 1 2.7665 -6.0883 -0.0002 30 1 2.5039 -8.6225 -0.8837 31 1 2.5019 -8.6142 0.8962 32 1 0.2544 -9.6618 0.8988 33 1 0.2563 -9.6700 -0.8811 34 1 1.6558 -11.2300 -2.0729 35 1 3.0414 -10.3465 -1.3869 36 1 3.8923 -12.4197 -0.3686 37 1 3.6601 -12.6596 -2.1174 38 1 2.2132 -13.3819 1.1581 39 1 0.8479 -14.2703 0.4396 40 1 0.1902 -11.9803 1.2057 41 1 -0.0192 -12.1890 -0.5500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135336800.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = -96.256755 kcal Electronic energy + Delta-G solvation = -20225.939365 eV Core-core repulsion = 16946.898379 eV Total energy + Delta-G solvation = -3279.040986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99637 -40.29647 -37.45220 -36.91391 -35.49077 -33.29451 -32.51540 -31.98577 -29.58445 -27.79648 -25.63259 -25.00653 -23.76094 -22.94730 -21.44193 -21.14456 -19.33090 -18.38186 -17.24820 -17.15643 -17.00560 -16.86208 -16.49224 -16.20330 -15.97751 -15.69698 -15.33940 -15.28835 -14.98382 -14.83347 -14.18827 -13.96957 -13.32874 -13.10999 -13.05493 -13.01593 -12.70210 -12.53273 -12.45674 -12.30931 -12.05207 -11.88311 -11.85683 -11.46659 -11.01518 -10.99138 -10.66446 -10.14578 -9.48305 -9.07819 -7.98016 -5.29535 1.48186 1.49595 1.59739 1.61678 2.03209 2.55858 2.78888 2.99007 3.36440 3.73965 3.83153 3.94372 3.99875 4.04678 4.08930 4.18390 4.21262 4.22389 4.34650 4.39020 4.50720 4.57930 4.65101 4.75538 4.83232 4.85079 4.90441 4.95817 5.02440 5.05791 5.12934 5.38838 5.48802 5.85317 5.90866 6.19574 6.22946 6.54757 7.24348 7.29005 8.01003 8.23618 9.25904 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.063473 B = 0.002317 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.025995 B =12082.658911 C =12378.296054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.246 4.246 8 H 0.084 0.916 9 N -0.749 5.749 10 C 0.149 3.851 11 C 0.127 3.873 12 N -0.711 5.711 13 C 0.509 3.491 14 O -0.593 6.593 15 C -0.121 4.121 16 C 0.075 3.925 17 N -0.537 5.537 18 C 0.009 3.991 19 C 0.062 3.938 20 O -0.409 6.409 21 C 0.065 3.935 22 C 0.015 3.985 23 H 0.252 0.748 24 H 0.373 0.627 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.419 0.581 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.032 0.968 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.033 -27.655 -0.232 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.378 4.378 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.022 3.978 11 C 0.002 3.998 12 N -0.363 5.363 13 C 0.297 3.703 14 O -0.473 6.473 15 C -0.161 4.161 16 C -0.053 4.053 17 N -0.262 5.262 18 C -0.119 4.119 19 C -0.015 4.015 20 O -0.328 6.328 21 C -0.012 4.012 22 C -0.113 4.113 23 H 0.061 0.939 24 H 0.205 0.795 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.256 0.744 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.683 -27.709 0.030 29.037 hybrid contribution -0.742 1.503 -0.525 1.756 sum 7.942 -26.206 -0.495 27.387 Atomic orbital electron populations 1.69843 1.06868 1.26233 1.59258 1.25697 0.96464 1.01556 1.03427 0.84982 0.78351 0.79240 0.76591 1.18499 1.22091 1.22069 1.19694 0.91764 0.84822 1.41502 0.89791 1.42458 1.05773 1.01201 1.89760 1.20858 0.93585 0.84024 0.99320 1.21125 0.94827 0.82988 1.00890 1.45759 1.11300 1.04625 1.74663 1.21317 0.87803 0.86567 0.74652 1.90709 1.16479 1.88447 1.51706 1.21565 0.98910 0.88337 1.07278 1.21700 0.94476 0.87867 1.01257 1.62239 1.27651 1.01744 1.34550 1.22977 0.98391 1.00461 0.90061 1.22813 0.91325 0.84395 1.02936 1.87962 1.57451 1.44918 1.42454 1.22766 0.94928 0.96653 0.86848 1.22848 0.94787 0.91535 1.02167 0.93910 0.79523 0.94350 0.94387 0.93120 0.93064 0.74379 0.86341 0.85599 0.90883 0.95630 0.94979 0.87507 0.91430 0.86931 0.91548 0.87001 0.88663 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.75 -37.99 5.60 -343.46 -1.92 -39.92 16 10 C 0.15 5.58 6.37 86.38 0.55 6.13 16 11 C 0.13 4.28 5.79 86.38 0.50 4.78 16 12 N -0.71 -17.36 5.56 -463.06 -2.57 -19.94 16 13 C 0.51 13.03 7.83 87.66 0.69 13.72 16 14 O -0.59 -21.24 15.98 -3.04 -0.05 -21.29 16 15 C -0.12 -1.90 5.64 29.85 0.17 -1.73 16 16 C 0.08 1.41 4.25 86.30 0.37 1.78 16 17 N -0.54 -8.32 4.73 -895.24 -4.23 -12.55 16 18 C 0.01 0.12 5.44 86.31 0.47 0.59 16 19 C 0.06 0.75 7.01 72.01 0.50 1.25 16 20 O -0.41 -6.80 10.83 -148.98 -1.61 -8.42 16 21 C 0.06 0.83 7.01 72.01 0.50 1.33 16 22 C 0.01 0.22 5.64 86.31 0.49 0.70 16 23 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 24 H 0.37 20.57 7.67 -92.71 -0.71 19.86 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.42 7.10 8.47 -92.71 -0.79 6.31 16 30 H 0.12 1.28 6.52 -2.38 -0.02 1.27 16 31 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.55 8.00 -2.38 -0.02 1.53 16 33 H 0.03 0.58 8.08 -2.39 -0.02 0.56 16 34 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.11 1.00 6.38 -2.39 -0.02 0.98 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.24 8.09 -2.39 -0.02 1.22 16 41 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -73.28 335.99 -3.01 -76.28 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.47 Total: 26.21 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.54 Total: 11.74 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -8.44 Total: -132.17 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.66 Total: -29.70 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.28 -3.01 -76.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135336800.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.973 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds