Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39539 * 120.14033 * 272.63974 * 3 2 1 5 5 C 1.37972 * 119.85500 * 179.72127 * 4 3 2 6 6 C 1.38343 * 120.14237 * 0.53282 * 5 4 3 7 7 C 1.50696 * 119.85910 * 179.74036 * 6 5 4 8 8 N 1.46899 * 109.47474 * 270.02578 * 7 6 5 9 9 C 1.46900 * 110.99810 * 293.95432 * 8 7 6 10 10 C 1.50699 * 109.47520 * 69.99636 * 9 8 7 11 11 H 1.08003 * 119.99616 * 0.02562 * 10 9 8 12 12 C 1.37868 * 120.00358 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00426 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00300 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46902 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47250 * 119.99752 * 14 12 10 17 17 H 1.48499 * 109.47474 * 240.00371 * 14 12 10 18 18 C 1.46900 * 111.00115 * 169.99897 * 8 7 6 19 19 C 1.53002 * 109.46755 * 189.99851 * 18 8 7 20 20 C 1.52997 * 109.46878 * 180.02562 * 19 18 8 21 21 C 1.53005 * 109.47231 * 179.97438 * 20 19 18 22 22 C 1.38344 * 120.28600 * 359.76701 * 6 5 4 23 23 C 1.37976 * 120.14221 * 359.95296 * 22 6 5 24 24 H 4.52067 * 14.02045 * 359.97438 * 4 2 1 25 25 H 1.08006 * 120.07325 * 359.96830 * 4 3 2 26 26 H 1.07996 * 119.92838 * 180.25329 * 5 4 3 27 27 H 1.09004 * 109.46695 * 30.02553 * 7 6 5 28 28 H 1.08997 * 109.47414 * 150.02230 * 7 6 5 29 29 H 1.09000 * 109.47230 * 189.99843 * 9 8 7 30 30 H 1.09000 * 109.47183 * 309.99678 * 9 8 7 31 31 H 0.96993 * 120.00736 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47195 * 309.99680 * 18 8 7 33 33 H 1.08999 * 109.46950 * 70.00069 * 18 8 7 34 34 H 1.09000 * 109.47129 * 299.99869 * 19 18 8 35 35 H 1.08999 * 109.47214 * 60.00379 * 19 18 8 36 36 H 1.09000 * 109.47069 * 299.99827 * 20 19 18 37 37 H 1.08996 * 109.47657 * 59.99951 * 20 19 18 38 38 H 1.08999 * 109.47159 * 179.97438 * 21 20 19 39 39 H 1.08992 * 109.47252 * 300.00144 * 21 20 19 40 40 H 1.09004 * 109.46732 * 59.99818 * 21 20 19 41 41 H 1.07999 * 119.93193 * 179.97438 * 22 6 5 42 42 H 1.07995 * 120.07445 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 -0.0546 1.2055 5 6 4.6863 -0.0595 1.1983 6 6 5.3751 0.0014 0.0001 7 6 6.8820 0.0015 0.0000 8 7 7.3716 1.3847 0.0708 9 6 7.0220 2.1298 -1.1460 10 6 5.5343 2.3674 -1.1797 11 1 4.9108 2.0019 -0.3771 12 6 4.9690 3.0513 -2.2349 13 7 5.7282 3.4969 -3.2120 14 14 3.1250 3.3465 -2.2762 15 1 2.5010 2.7499 -1.0679 16 1 2.8578 4.8071 -2.3019 17 1 2.5499 2.7166 -3.4918 18 6 8.8205 1.4188 0.3110 19 6 9.2516 2.8527 0.6255 20 6 10.7607 2.8883 0.8751 21 6 11.1921 4.3223 1.1890 22 6 4.6864 0.0626 -1.1982 23 6 3.3066 0.0624 -1.2051 24 1 -1.0500 0.0005 0.0001 25 1 2.7701 -0.0975 2.1418 26 1 5.2298 -0.1064 2.1304 27 1 7.2454 -0.5571 0.8626 28 1 7.2455 -0.4661 -0.9150 29 1 7.5430 3.0872 -1.1482 30 1 7.3178 1.5533 -2.0226 31 1 5.3306 3.9778 -3.9546 32 1 9.0642 0.7727 1.1544 33 1 9.3445 1.0686 -0.5783 34 1 9.0079 3.4987 -0.2179 35 1 8.7276 3.2028 1.5149 36 1 11.0049 2.2422 1.7183 37 1 11.2845 2.5382 -0.0144 38 1 12.2671 4.3475 1.3672 39 1 10.9480 4.9680 0.3456 40 1 10.6683 4.6727 2.0785 41 1 5.2298 0.1103 -2.1303 42 1 2.7701 0.1098 -2.1411 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144573120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = 77.269469 kcal Electronic energy + Delta-G solvation = -20757.144654 eV Core-core repulsion = 17896.477593 eV Total energy + Delta-G solvation = -2860.667061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.10550 -36.97851 -34.55711 -33.13854 -32.61029 -30.38370 -30.25743 -28.28146 -27.28376 -24.66401 -22.94954 -21.88959 -21.79297 -20.54939 -19.74333 -18.37901 -16.63643 -15.60560 -15.27742 -14.89162 -14.83496 -14.36923 -14.33877 -13.61677 -13.46061 -12.94394 -12.74326 -12.59258 -12.34588 -12.33826 -12.01354 -11.86597 -11.18836 -11.06145 -10.94131 -10.88331 -10.77394 -10.62953 -10.53143 -10.41991 -10.20771 -9.96587 -9.89535 -9.56869 -9.17631 -8.51288 -8.03866 -7.43939 -7.29678 -6.09250 -3.97759 1.60292 2.23350 3.11491 3.30112 3.39717 3.51189 3.54028 4.41717 4.56836 4.71290 4.98043 5.24460 5.31011 5.38281 5.43792 5.50712 5.64734 5.67275 5.75676 5.90369 6.00109 6.01593 6.04272 6.11406 6.14709 6.18706 6.25830 6.31132 6.38719 6.41204 6.68444 6.70659 6.81327 6.82449 7.07539 7.20460 7.24399 7.27927 7.45752 7.71819 7.82745 7.90304 8.06692 8.14304 8.50554 9.03467 9.56137 11.00310 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.006013 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.427514 B = 4655.091417 C = 5660.410657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.117 4.117 3 C -0.004 4.004 4 C -0.124 4.124 5 C -0.106 4.106 6 C -0.050 4.050 7 C 0.105 3.895 8 N -0.534 5.534 9 C 0.185 3.815 10 C -0.493 4.493 11 H 0.084 0.916 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.872 3.128 15 H -0.256 1.256 16 H -0.288 1.288 17 H -0.284 1.284 18 C 0.059 3.941 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.019 4.019 23 C -0.128 4.128 24 H 0.218 0.782 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.036 0.964 30 H -0.010 1.010 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.125 0.875 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -6.021 6.838 9.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.117 4.117 3 C -0.004 4.004 4 C -0.142 4.142 5 C -0.125 4.125 6 C -0.051 4.051 7 C -0.023 4.023 8 N -0.259 5.259 9 C 0.060 3.940 10 C -0.530 4.530 11 H 0.102 0.898 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.700 3.300 15 H -0.179 1.179 16 H -0.214 1.214 17 H -0.210 1.210 18 C -0.070 4.070 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.208 4.208 22 C -0.038 4.038 23 C -0.147 4.147 24 H 0.235 0.765 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.009 -5.680 7.059 9.280 hybrid contribution -0.875 0.225 -0.992 1.342 sum 1.134 -5.454 6.067 8.237 Atomic orbital electron populations 1.24659 0.95631 1.02417 1.01312 1.20425 0.92385 0.99365 0.99533 1.15855 0.85767 1.04509 0.94282 1.20782 0.94069 1.03431 0.95909 1.20653 0.93185 1.01346 0.97326 1.19570 0.95021 0.97682 0.92828 1.20848 0.91446 0.90706 0.99317 1.62204 1.10667 1.11393 1.41613 1.19889 0.96897 0.93247 0.83943 1.21730 0.92383 1.32908 1.05980 0.89831 1.24898 0.97796 0.95645 0.95852 1.69970 1.35150 1.37678 1.10230 0.86799 0.86315 0.77940 0.78989 1.17943 1.21405 1.21024 1.22003 0.89437 0.96806 0.98705 1.21618 0.93883 0.97152 1.02707 1.21494 0.96789 0.96752 1.00939 1.21754 1.00200 0.97152 1.01676 1.20712 0.92916 0.91896 0.98281 1.20825 0.94368 1.03366 0.96096 0.76472 0.87038 0.86629 0.91824 0.95074 0.94630 0.99181 0.92997 0.92395 0.96123 0.91168 0.91537 0.92566 0.92511 0.93356 0.92677 0.92846 0.85705 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.45 19.25 29.55 0.57 -2.89 16 2 C -0.12 -2.17 13.24 -38.84 -0.51 -2.69 16 3 C 0.00 -0.08 5.72 -107.00 -0.61 -0.69 16 4 C -0.12 -2.25 9.75 -39.19 -0.38 -2.63 16 5 C -0.11 -1.91 9.48 -39.64 -0.38 -2.29 16 6 C -0.05 -0.97 3.46 -104.55 -0.36 -1.34 16 7 C 0.10 1.91 5.11 -4.98 -0.03 1.88 16 8 N -0.53 -10.83 4.56 -237.52 -1.08 -11.91 16 9 C 0.19 4.51 4.52 -4.98 -0.02 4.49 16 10 C -0.49 -12.83 5.37 -34.44 -0.18 -13.02 16 11 H 0.08 2.21 4.72 -52.48 -0.25 1.96 16 12 C 0.06 1.64 5.44 -17.82 -0.10 1.54 16 13 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 14 Si 0.87 21.68 27.55 -169.99 -4.68 16.99 16 15 H -0.26 -6.39 6.90 56.52 0.39 -6.00 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 C 0.06 1.00 4.96 -3.82 -0.02 0.98 16 19 C -0.12 -1.88 5.17 -26.73 -0.14 -2.02 16 20 C -0.12 -1.58 5.93 -26.73 -0.16 -1.74 16 21 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 22 C -0.02 -0.40 5.86 -39.64 -0.23 -0.63 16 23 C -0.13 -2.62 7.45 -39.19 -0.29 -2.91 16 24 H 0.22 2.33 7.80 -54.09 -0.42 1.91 16 25 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.06 1.00 7.87 -51.93 -0.41 0.59 16 28 H 0.03 0.57 7.95 -51.93 -0.41 0.16 16 29 H 0.04 0.94 5.98 -51.93 -0.31 0.63 16 30 H -0.01 -0.25 7.99 -51.93 -0.41 -0.67 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 33 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 1.31 6.31 -51.93 -0.33 0.98 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.13 2.70 7.67 -52.49 -0.40 2.29 16 42 H 0.11 2.20 8.01 -52.49 -0.42 1.78 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -28.88 340.78 -9.10 -37.99 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.73 Total: 1.91 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.48 Total: -25.35 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.35 Total: -36.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.68 Total: 16.99 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.88 -9.10 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144573120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.257 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds