Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39539 * 120.14033 * 272.63974 * 3 2 1 5 5 C 1.37972 * 119.85500 * 179.72127 * 4 3 2 6 6 C 1.38343 * 120.14237 * 0.53282 * 5 4 3 7 7 C 1.50696 * 119.85910 * 179.74036 * 6 5 4 8 8 N 1.46899 * 109.47474 * 270.02578 * 7 6 5 9 9 C 1.46900 * 110.99810 * 293.95432 * 8 7 6 10 10 C 1.50699 * 109.47520 * 69.99636 * 9 8 7 11 11 H 1.08003 * 119.99616 * 0.02562 * 10 9 8 12 12 C 1.37868 * 120.00358 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00426 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00300 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46902 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47250 * 119.99752 * 14 12 10 17 17 H 1.48499 * 109.47474 * 240.00371 * 14 12 10 18 18 C 1.46900 * 111.00115 * 169.99897 * 8 7 6 19 19 C 1.53002 * 109.46755 * 189.99851 * 18 8 7 20 20 C 1.52997 * 109.46878 * 180.02562 * 19 18 8 21 21 C 1.53005 * 109.47231 * 179.97438 * 20 19 18 22 22 C 1.38344 * 120.28600 * 359.76701 * 6 5 4 23 23 C 1.37976 * 120.14221 * 359.95296 * 22 6 5 24 24 H 4.52067 * 14.02045 * 359.97438 * 4 2 1 25 25 H 1.08006 * 120.07325 * 359.96830 * 4 3 2 26 26 H 1.07996 * 119.92838 * 180.25329 * 5 4 3 27 27 H 1.09004 * 109.46695 * 30.02553 * 7 6 5 28 28 H 1.08997 * 109.47414 * 150.02230 * 7 6 5 29 29 H 1.09000 * 109.47230 * 189.99843 * 9 8 7 30 30 H 1.09000 * 109.47183 * 309.99678 * 9 8 7 31 31 H 0.96993 * 120.00736 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.47195 * 309.99680 * 18 8 7 33 33 H 1.08999 * 109.46950 * 70.00069 * 18 8 7 34 34 H 1.09000 * 109.47129 * 299.99869 * 19 18 8 35 35 H 1.08999 * 109.47214 * 60.00379 * 19 18 8 36 36 H 1.09000 * 109.47069 * 299.99827 * 20 19 18 37 37 H 1.08996 * 109.47657 * 59.99951 * 20 19 18 38 38 H 1.08999 * 109.47159 * 179.97438 * 21 20 19 39 39 H 1.08992 * 109.47252 * 300.00144 * 21 20 19 40 40 H 1.09004 * 109.46732 * 59.99818 * 21 20 19 41 41 H 1.07999 * 119.93193 * 179.97438 * 22 6 5 42 42 H 1.07995 * 120.07445 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 -0.0546 1.2055 5 6 4.6863 -0.0595 1.1983 6 6 5.3751 0.0014 0.0001 7 6 6.8820 0.0015 0.0000 8 7 7.3716 1.3847 0.0708 9 6 7.0220 2.1298 -1.1460 10 6 5.5343 2.3674 -1.1797 11 1 4.9108 2.0019 -0.3771 12 6 4.9690 3.0513 -2.2349 13 7 5.7282 3.4969 -3.2120 14 14 3.1250 3.3465 -2.2762 15 1 2.5010 2.7499 -1.0679 16 1 2.8578 4.8071 -2.3019 17 1 2.5499 2.7166 -3.4918 18 6 8.8205 1.4188 0.3110 19 6 9.2516 2.8527 0.6255 20 6 10.7607 2.8883 0.8751 21 6 11.1921 4.3223 1.1890 22 6 4.6864 0.0626 -1.1982 23 6 3.3066 0.0624 -1.2051 24 1 -1.0500 0.0005 0.0001 25 1 2.7701 -0.0975 2.1418 26 1 5.2298 -0.1064 2.1304 27 1 7.2454 -0.5571 0.8626 28 1 7.2455 -0.4661 -0.9150 29 1 7.5430 3.0872 -1.1482 30 1 7.3178 1.5533 -2.0226 31 1 5.3306 3.9778 -3.9546 32 1 9.0642 0.7727 1.1544 33 1 9.3445 1.0686 -0.5783 34 1 9.0079 3.4987 -0.2179 35 1 8.7276 3.2028 1.5149 36 1 11.0049 2.2422 1.7183 37 1 11.2845 2.5382 -0.0144 38 1 12.2671 4.3475 1.3672 39 1 10.9480 4.9680 0.3456 40 1 10.6683 4.6727 2.0785 41 1 5.2298 0.1103 -2.1303 42 1 2.7701 0.1098 -2.1411 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144573120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = 62.152589 kcal Electronic energy + Delta-G solvation = -20757.800171 eV Core-core repulsion = 17896.477593 eV Total energy + Delta-G solvation = -2861.322578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62995 -38.47869 -35.85125 -34.69971 -34.36097 -31.79257 -31.74068 -29.84491 -28.92700 -26.14656 -24.72299 -23.38893 -23.11095 -21.83204 -21.31361 -19.72836 -18.63688 -17.08015 -16.77772 -16.34753 -16.26244 -16.10977 -15.87644 -15.08088 -14.92616 -14.32440 -14.17143 -14.05163 -14.01166 -13.78791 -13.65346 -13.28877 -13.01568 -12.64153 -12.54930 -12.31561 -12.25926 -12.13047 -11.96934 -11.79165 -11.55865 -11.39205 -11.30760 -11.25290 -11.03624 -10.56623 -9.58626 -9.02587 -8.92745 -8.18999 -6.10618 0.15460 0.71872 1.30175 1.34945 1.49400 1.82083 2.15030 2.38471 3.07345 3.22020 3.48007 3.53976 4.01858 4.10308 4.15153 4.19543 4.22347 4.35502 4.52397 4.57384 4.63463 4.69499 4.75221 4.86790 4.89773 4.92522 4.99553 5.04796 5.13931 5.22291 5.26254 5.33018 5.33434 5.36328 5.48768 5.55465 5.63883 5.71374 5.77043 5.93256 6.14365 6.23876 6.40307 6.62021 6.69750 6.96722 7.46828 8.92069 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.018351 B = 0.006013 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.427514 B = 4655.091417 C = 5660.410657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.189 4.189 3 C -0.014 4.014 4 C -0.122 4.122 5 C -0.100 4.100 6 C -0.063 4.063 7 C 0.104 3.896 8 N -0.540 5.540 9 C 0.203 3.797 10 C -0.482 4.482 11 H 0.083 0.917 12 C 0.018 3.982 13 N -0.930 5.930 14 Si 0.919 3.081 15 H -0.256 1.256 16 H -0.291 1.291 17 H -0.283 1.283 18 C 0.058 3.942 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.150 4.150 22 C -0.034 4.034 23 C -0.142 4.142 24 H 0.264 0.736 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.101 0.899 28 H 0.025 0.975 29 H 0.011 0.989 30 H -0.039 1.039 31 H 0.259 0.741 32 H 0.091 0.909 33 H 0.016 0.984 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -7.081 9.581 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.189 4.189 3 C -0.014 4.014 4 C -0.140 4.140 5 C -0.119 4.119 6 C -0.064 4.064 7 C -0.023 4.023 8 N -0.264 5.264 9 C 0.076 3.924 10 C -0.519 4.519 11 H 0.101 0.899 12 C -0.180 4.180 13 N -0.571 5.571 14 Si 0.746 3.254 15 H -0.179 1.179 16 H -0.218 1.218 17 H -0.209 1.209 18 C -0.070 4.070 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.208 4.208 22 C -0.053 4.053 23 C -0.160 4.160 24 H 0.280 0.720 25 H 0.156 0.844 26 H 0.164 0.836 27 H 0.119 0.881 28 H 0.043 0.957 29 H 0.029 0.971 30 H -0.021 1.021 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.232 -6.759 9.822 11.986 hybrid contribution -0.747 0.431 -1.754 1.955 sum 0.485 -6.327 8.068 10.264 Atomic orbital electron populations 1.25737 0.96415 0.98613 0.97961 1.20700 0.92976 1.02517 1.02721 1.16106 0.87121 1.03888 0.94298 1.21168 0.94361 1.01929 0.96518 1.20989 0.93368 0.99720 0.97799 1.19751 0.95707 0.98031 0.92898 1.20955 0.90915 0.89751 1.00684 1.62142 1.13031 1.12416 1.38794 1.19510 0.95744 0.92282 0.84819 1.21882 0.93186 1.31582 1.05289 0.89907 1.25425 1.00410 0.96199 0.96002 1.70060 1.36316 1.39642 1.11127 0.86069 0.83299 0.77247 0.78771 1.17947 1.21788 1.20946 1.22142 0.87257 0.97884 0.99704 1.21561 0.96428 0.95993 1.00892 1.21449 0.94020 0.97958 1.01852 1.21754 1.01622 0.96156 1.01224 1.20604 0.93159 0.93473 0.98097 1.20871 0.94358 1.04179 0.96607 0.71972 0.84404 0.83634 0.88097 0.95722 0.97084 1.02121 0.93234 0.89050 0.96579 0.94715 0.91987 0.90378 0.92440 0.91231 0.94029 0.92564 0.88164 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.66 19.25 74.32 1.43 -3.23 16 2 C -0.19 -6.65 13.24 30.02 0.40 -6.25 16 3 C -0.01 -0.54 5.72 -21.41 -0.12 -0.66 16 4 C -0.12 -4.16 9.75 22.52 0.22 -3.94 16 5 C -0.10 -3.37 9.48 22.23 0.21 -3.16 16 6 C -0.06 -2.40 3.46 -19.82 -0.07 -2.47 16 7 C 0.10 3.68 5.11 85.56 0.44 4.12 16 8 N -0.54 -21.67 4.56 -905.37 -4.13 -25.80 16 9 C 0.20 10.25 4.52 85.56 0.39 10.64 16 10 C -0.48 -25.79 5.37 25.60 0.14 -25.65 16 11 H 0.08 4.41 4.72 -2.91 -0.01 4.40 16 12 C 0.02 0.98 5.44 84.65 0.46 1.44 16 13 N -0.93 -55.52 13.29 21.44 0.28 -55.24 16 14 Si 0.92 45.76 27.55 68.60 1.89 47.65 16 15 H -0.26 -12.61 6.90 99.48 0.69 -11.92 16 16 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 17 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 18 C 0.06 1.90 4.96 86.30 0.43 2.32 16 19 C -0.11 -3.56 5.17 30.59 0.16 -3.40 16 20 C -0.11 -2.78 5.93 30.59 0.18 -2.60 16 21 C -0.15 -3.36 9.91 71.98 0.71 -2.64 16 22 C -0.03 -1.46 5.86 22.23 0.13 -1.33 16 23 C -0.14 -5.88 7.45 22.52 0.17 -5.72 16 24 H 0.26 4.16 7.80 -4.42 -0.03 4.13 16 25 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 26 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 27 H 0.10 2.82 7.87 -2.38 -0.02 2.80 16 28 H 0.02 0.90 7.95 -2.39 -0.02 0.88 16 29 H 0.01 0.62 5.98 -2.39 -0.01 0.60 16 30 H -0.04 -2.16 7.99 -2.39 -0.02 -2.18 16 31 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.09 2.42 7.93 -2.39 -0.02 2.40 16 33 H 0.02 0.54 8.12 -2.39 -0.02 0.53 16 34 H 0.03 1.35 6.31 -2.39 -0.02 1.33 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.10 4.63 7.67 -2.91 -0.02 4.61 16 42 H 0.10 4.26 8.01 -2.91 -0.02 4.24 16 Total: -1.00 -65.08 340.78 4.26 -60.81 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.95 Total: 15.09 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 5.27 Total: -42.52 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.85 Total: -81.04 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.89 Total: 47.65 kcal Total: -65.08 4.26 -60.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144573120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.967 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds