Wall clock time and date at job start Mon Mar 30 2020 00:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48506 * 109.46869 * 239.99830 * 3 2 1 5 5 H 1.48494 * 109.47583 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47211 * 119.99982 * 3 2 1 7 7 C 1.37879 * 120.00225 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84541 * 0.02562 * 7 2 1 9 9 C 1.53230 * 108.53399 * 231.32528 * 8 7 2 10 10 C 1.52954 * 109.40574 * 305.37205 * 9 8 7 11 11 H 1.09001 * 109.41759 * 303.56453 * 10 9 8 12 12 N 1.46497 * 109.41545 * 183.70389 * 10 9 8 13 13 C 1.39678 * 120.00321 * 155.00243 * 12 10 9 14 14 C 1.38935 * 120.10884 * 0.26285 * 13 12 10 15 15 C 1.37960 * 119.85436 * 180.28019 * 14 13 12 16 16 C 1.38575 * 120.32076 * 359.71540 * 15 14 13 17 17 C 1.38285 * 119.96214 * 0.02562 * 16 15 14 18 18 C 1.38377 * 119.92804 * 359.97438 * 17 16 15 19 19 C 1.51388 * 109.75114 * 179.97438 * 17 16 15 20 20 C 1.54336 * 105.17038 * 17.19945 * 19 17 16 21 21 C 1.51390 * 130.30223 * 179.97438 * 16 15 14 22 22 C 1.52961 * 109.81787 * 63.60102 * 10 9 8 23 23 C 1.51269 * 120.85112 * 179.97438 * 7 2 1 24 24 H 0.97002 * 120.00012 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.62033 * 111.61306 * 8 7 2 26 26 H 1.08993 * 109.62781 * 351.04001 * 8 7 2 27 27 H 1.09007 * 109.47814 * 185.39537 * 9 8 7 28 28 H 1.08997 * 109.48235 * 65.35705 * 9 8 7 29 29 H 0.97000 * 119.99993 * 335.00888 * 12 10 9 30 30 H 1.07997 * 120.06939 * 0.03650 * 14 13 12 31 31 H 1.07999 * 119.84048 * 179.74394 * 15 14 13 32 32 H 1.08002 * 119.91882 * 179.97438 * 18 17 16 33 33 H 1.08993 * 110.30229 * 136.12612 * 19 17 16 34 34 H 1.09003 * 110.29724 * 258.18128 * 19 17 16 35 35 H 1.09003 * 110.82212 * 91.85069 * 20 19 17 36 36 H 1.09002 * 110.82398 * 215.39914 * 20 19 17 37 37 H 1.09002 * 110.30385 * 43.89361 * 21 16 15 38 38 H 1.09003 * 110.30337 * 281.74057 * 21 16 15 39 39 H 1.09009 * 109.48107 * 56.37975 * 22 10 9 40 40 H 1.09004 * 109.48753 * 176.42018 * 22 10 9 41 41 H 1.08997 * 109.62268 * 248.38823 * 23 7 2 42 42 H 1.08997 * 109.62567 * 8.76856 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8229 -3.3825 1.1352 10 6 3.3398 -3.5069 0.9841 11 1 3.5740 -3.9111 -0.0007 12 7 3.8597 -4.4074 2.0161 13 6 5.0594 -5.0914 1.8064 14 6 5.7642 -4.9154 0.6221 15 6 6.9456 -5.5981 0.4181 16 6 7.4358 -6.4543 1.3911 17 6 6.7393 -6.6276 2.5731 18 6 5.5540 -5.9450 2.7824 19 6 7.4769 -7.6054 3.4629 20 6 8.9080 -7.6734 2.8891 21 6 8.6884 -7.3044 1.4066 22 6 3.9907 -2.1310 1.1353 23 6 3.5171 -1.2164 0.0000 24 1 -0.4850 0.8401 -0.0004 25 1 1.4201 -3.0192 -0.9538 26 1 0.2037 -2.3408 0.1600 27 1 1.3705 -4.3732 1.0900 28 1 1.5897 -2.9196 2.0940 29 1 3.3709 -4.5287 2.8451 30 1 5.3861 -4.2486 -0.1386 31 1 7.4912 -5.4642 -0.5043 32 1 5.0099 -6.0807 3.7054 33 1 7.4980 -7.2405 4.4898 34 1 7.0037 -8.5864 3.4204 35 1 9.5563 -6.9460 3.3777 36 1 9.3150 -8.6804 2.9814 37 1 9.5372 -6.7341 1.0290 38 1 8.5416 -8.2051 0.8104 39 1 3.7062 -1.6976 2.0942 40 1 5.0748 -2.2346 1.0902 41 1 3.8771 -1.6006 -0.9544 42 1 3.8983 -0.2072 0.1556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:03 Heat of formation + Delta-G solvation = -1.182589 kcal Electronic energy + Delta-G solvation = -20425.600029 eV Core-core repulsion = 17561.531031 eV Total energy + Delta-G solvation = -2864.068998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94235 -37.86512 -35.70246 -33.38598 -31.78887 -30.71303 -29.74827 -28.03996 -27.55947 -25.82147 -22.69631 -22.13182 -21.39398 -20.71108 -19.98345 -19.27098 -16.77991 -16.15321 -15.77755 -15.50027 -14.83024 -14.48597 -14.35245 -13.45131 -13.27183 -13.15677 -12.89867 -12.80731 -12.61972 -12.26987 -12.11996 -12.02226 -11.45853 -11.34181 -11.20147 -11.09865 -10.99430 -10.76117 -10.61079 -10.54512 -10.15803 -10.03176 -9.81151 -9.35559 -8.99155 -8.66508 -8.50826 -8.47590 -6.90743 -6.13897 -4.05069 1.67578 1.87621 3.26931 3.33826 3.35216 3.85983 4.09393 4.35819 4.56414 4.65002 4.93594 5.13302 5.20864 5.28358 5.37841 5.62210 5.64989 5.66252 5.69727 5.76066 5.76691 5.85193 5.97702 6.07584 6.10958 6.18259 6.33141 6.45003 6.54999 6.65085 6.68886 6.72645 6.83526 6.85410 6.95435 6.99222 7.04498 7.20493 7.36589 7.59228 7.66832 7.75485 7.86115 8.18818 8.34080 8.92335 9.50846 10.95761 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.038068 B = 0.003824 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.348194 B = 7319.781614 C = 7635.701989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.491 4.491 8 C 0.013 3.987 9 C -0.114 4.114 10 C 0.160 3.840 11 H 0.068 0.932 12 N -0.740 5.740 13 C 0.232 3.768 14 C -0.198 4.198 15 C -0.058 4.058 16 C -0.174 4.174 17 C -0.053 4.053 18 C -0.196 4.196 19 C -0.081 4.081 20 C -0.120 4.120 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.009 4.009 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.060 0.940 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.393 0.607 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.018 0.982 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.343 -12.818 4.902 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.510 4.510 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.057 3.943 11 H 0.086 0.914 12 N -0.366 5.366 13 C 0.126 3.874 14 C -0.220 4.220 15 C -0.076 4.076 16 C -0.177 4.177 17 C -0.054 4.054 18 C -0.219 4.219 19 C -0.118 4.118 20 C -0.158 4.158 21 C -0.107 4.107 22 C -0.158 4.158 23 C -0.047 4.047 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.227 0.773 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 13.082 -12.561 4.739 18.744 hybrid contribution 0.147 1.016 0.390 1.098 sum 13.228 -11.545 5.129 18.291 Atomic orbital electron populations 1.69820 1.06156 1.27116 1.49656 1.24840 0.94730 0.98576 0.94459 0.86654 0.79402 0.82987 0.79024 1.19971 1.21842 1.20010 1.20027 0.89305 0.91510 1.50154 1.19335 0.98751 0.92740 0.91624 1.21902 0.92525 0.98546 1.02245 1.20974 0.94687 0.88744 0.89929 0.91353 1.45247 1.22155 1.48018 1.21142 1.17741 0.86436 0.90153 0.93044 1.20666 0.97406 1.05889 0.98079 1.20312 0.94959 0.94709 0.97670 1.20184 0.98950 1.02446 0.96096 1.20171 0.93899 0.95858 0.95478 1.19923 0.98666 1.03377 0.99980 1.21021 0.94591 0.97901 0.98306 1.22270 0.96360 1.01388 0.95735 1.20853 0.95190 0.98184 0.96523 1.22020 0.97138 0.95710 1.00927 1.19612 0.96682 0.94669 0.93771 0.92483 0.97627 0.92136 0.94641 0.92831 0.77327 0.85584 0.86865 0.86983 0.91161 0.90577 0.91246 0.91074 0.91614 0.91293 0.92912 0.94552 0.96353 0.95644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 12.73 55.43 0.71 -24.64 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.89 21.20 26.80 -169.99 -4.56 16.64 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.49 -12.71 5.51 -98.92 -0.55 -13.25 16 8 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 9 C -0.11 -2.32 5.40 -26.64 -0.14 -2.47 16 10 C 0.16 3.02 2.05 -67.98 -0.14 2.88 16 11 H 0.07 1.32 6.50 -51.93 -0.34 0.99 16 12 N -0.74 -12.09 5.25 -52.24 -0.27 -12.37 16 13 C 0.23 3.71 6.63 -83.83 -0.56 3.16 16 14 C -0.20 -3.15 8.79 -39.43 -0.35 -3.50 16 15 C -0.06 -0.82 10.03 -39.56 -0.40 -1.22 16 16 C -0.17 -2.34 6.14 -104.14 -0.64 -2.98 16 17 C -0.05 -0.72 6.13 -104.22 -0.64 -1.36 16 18 C -0.20 -2.84 9.89 -39.33 -0.39 -3.23 16 19 C -0.08 -0.83 6.77 -26.85 -0.18 -1.01 16 20 C -0.12 -1.07 7.08 -25.33 -0.18 -1.25 16 21 C -0.07 -0.72 6.77 -26.84 -0.18 -0.91 16 22 C -0.12 -2.41 5.42 -26.61 -0.14 -2.56 16 23 C -0.01 -0.21 5.60 -27.46 -0.15 -0.37 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 26 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 27 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.39 5.84 8.61 -40.82 -0.35 5.48 16 30 H 0.13 2.07 6.14 -52.49 -0.32 1.75 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 40 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -27.73 324.89 -10.80 -38.53 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.68 Total: 2.85 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -4.90 Total: -25.91 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.43 Total: -37.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.56 Total: 16.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.73 -10.80 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.349 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds