Wall clock time and date at job start Mon Mar 30 2020 01:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36352 * 119.92140 * 2 1 4 4 C 1.40865 * 119.83879 * 180.02562 * 3 2 1 5 5 C 1.41142 * 120.15909 * 179.97438 * 4 3 2 6 6 H 1.07995 * 119.99651 * 27.07661 * 5 4 3 7 7 C 1.39858 * 119.99968 * 207.07650 * 5 4 3 8 8 N 1.30901 * 120.00112 * 13.17272 * 7 5 4 9 9 Si 1.86805 * 119.99875 * 193.17052 * 7 5 4 10 10 H 1.48504 * 109.46997 * 90.00225 * 9 7 5 11 11 H 1.48503 * 109.47011 * 209.99884 * 9 7 5 12 12 H 1.48494 * 109.46978 * 330.00417 * 9 7 5 13 13 C 1.40904 * 119.68739 * 359.97438 * 4 3 2 14 14 C 1.36328 * 119.83653 * 359.74354 * 13 4 3 15 15 C 1.39546 * 119.91644 * 180.02562 * 2 1 3 16 16 N 1.38863 * 119.83996 * 359.95908 * 15 2 1 17 17 C 1.46501 * 119.99690 * 180.73233 * 16 15 2 18 18 C 1.52998 * 109.47196 * 86.32496 * 17 16 15 19 19 C 1.52995 * 117.51970 * 348.00812 * 18 17 16 20 20 C 1.52995 * 60.00545 * 107.47758 * 19 18 17 21 21 C 1.52996 * 109.46971 * 206.32630 * 17 16 15 22 22 C 1.53010 * 117.49550 * 128.74649 * 21 17 16 23 23 C 1.53000 * 117.49900 * 60.08784 * 21 17 16 24 24 H 1.08997 * 109.46723 * 269.97892 * 1 2 3 25 25 H 1.09006 * 109.47008 * 29.97170 * 1 2 3 26 26 H 1.08998 * 109.47458 * 149.97423 * 1 2 3 27 27 H 1.07999 * 120.08204 * 0.02562 * 3 2 1 28 28 H 0.97005 * 120.00165 * 179.97438 * 8 7 5 29 29 H 1.07996 * 120.08147 * 180.02562 * 13 4 3 30 30 H 1.07997 * 119.92169 * 180.24632 * 14 13 4 31 31 H 0.96993 * 119.99972 * 0.72744 * 16 15 2 32 32 H 1.09002 * 109.47330 * 326.32723 * 17 16 15 33 33 H 1.08997 * 115.55253 * 202.30237 * 18 17 16 34 34 H 1.09002 * 117.50108 * 214.96916 * 19 18 17 35 35 H 1.09002 * 117.49763 * 359.97438 * 19 18 17 36 36 H 1.08990 * 117.50188 * 252.51803 * 20 19 18 37 37 H 1.08995 * 117.51872 * 107.47633 * 20 19 18 38 38 H 1.08999 * 115.55451 * 274.41633 * 21 17 16 39 39 H 1.08996 * 117.50039 * 359.97438 * 22 21 17 40 40 H 1.08999 * 117.49401 * 145.02246 * 22 21 17 41 41 H 1.08994 * 117.49868 * 214.97492 * 23 21 17 42 42 H 1.08999 * 117.49698 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 -0.0005 5 6 4.3067 2.3991 -0.0011 6 1 3.8593 3.2851 0.4246 7 6 5.5904 2.4599 -0.5529 8 7 6.0324 1.4742 -1.2921 9 14 6.6741 3.9479 -0.2351 10 1 7.4813 3.7197 0.9902 11 1 7.5801 4.1567 -1.3930 12 1 5.8222 5.1501 -0.0499 13 6 4.2919 -0.0453 -0.0005 14 6 3.5988 -1.2193 0.0053 15 6 2.2030 -1.2095 -0.0005 16 7 1.5036 -2.4091 -0.0002 17 6 2.2307 -3.6809 0.0154 18 6 2.5491 -4.0686 1.4608 19 6 2.3395 -3.0051 2.5405 20 6 1.3753 -4.1882 2.4351 21 6 1.3681 -4.7694 -0.6264 22 6 2.0038 -5.6134 -1.7331 23 6 0.9426 -4.5668 -2.0820 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6472 2.1171 0.0004 28 1 6.9226 1.5165 -1.6752 29 1 5.3718 -0.0543 -0.0005 30 1 4.1309 -2.1590 0.0093 31 1 0.5337 -2.4051 -0.0103 32 1 3.1594 -3.5754 -0.5454 33 1 3.3824 -4.7592 1.5897 34 1 3.0351 -2.9959 3.3797 35 1 1.9752 -2.0286 2.2212 36 1 0.3765 -3.9904 2.0463 37 1 1.4364 -4.9578 3.2045 38 1 0.6615 -5.2635 0.0404 39 1 3.0362 -5.3930 -2.0041 40 1 1.7149 -6.6627 -1.7945 41 1 -0.0438 -4.9280 -2.3729 42 1 1.2768 -3.6579 -2.5822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168743621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:56 Heat of formation + Delta-G solvation = 57.957338 kcal Electronic energy + Delta-G solvation = -20861.257361 eV Core-core repulsion = 17999.752863 eV Total energy + Delta-G solvation = -2861.504498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69334 -39.00903 -37.08161 -36.00236 -34.12738 -32.97454 -30.71238 -28.29441 -27.45076 -25.79805 -23.47229 -23.19601 -22.41075 -22.22867 -21.62250 -20.13318 -18.71420 -17.83259 -17.48119 -16.75854 -16.48866 -15.86649 -15.42532 -15.07002 -14.89953 -14.47816 -14.31987 -13.90044 -13.54731 -13.45859 -13.15623 -12.91857 -12.77641 -12.68393 -12.40284 -12.36531 -12.32088 -12.24194 -12.03369 -11.47551 -11.30520 -11.26234 -11.09747 -11.01801 -10.89727 -10.63087 -10.24826 -9.16989 -8.46767 -8.04363 -5.99135 1.14851 1.21322 1.38882 1.51301 1.60037 2.28150 2.63364 2.88328 3.00731 3.26656 3.74389 3.85207 3.99659 4.09888 4.19122 4.22467 4.28655 4.39079 4.46222 4.53062 4.69129 4.74526 4.83037 4.87391 4.90395 4.96044 5.06295 5.07610 5.13153 5.14105 5.18715 5.30266 5.31744 5.35535 5.41645 5.45846 5.57889 5.76491 5.94345 6.05443 6.24693 6.46577 6.73194 6.93698 7.12812 7.20859 7.39803 8.53477 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.004820 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.361545 B = 5808.192628 C = 5934.243123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.147 4.147 3 C -0.192 4.192 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.029 3.971 8 N -0.850 5.850 9 Si 0.976 3.024 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.262 1.262 13 C -0.141 4.141 14 C -0.169 4.169 15 C 0.134 3.866 16 N -0.734 5.734 17 C 0.218 3.782 18 C -0.168 4.168 19 C -0.186 4.186 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.167 4.167 23 C -0.175 4.175 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.279 0.721 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.395 0.605 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 -13.092 2.320 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 C -0.212 4.212 4 C 0.030 3.970 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.181 4.181 8 N -0.479 5.479 9 Si 0.798 3.202 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.186 1.186 13 C -0.161 4.161 14 C -0.191 4.191 15 C 0.035 3.965 16 N -0.368 5.368 17 C 0.112 3.888 18 C -0.188 4.188 19 C -0.223 4.223 20 C -0.188 4.188 21 C -0.172 4.172 22 C -0.204 4.204 23 C -0.213 4.213 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.231 0.769 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.414 -13.272 2.171 15.864 hybrid contribution 0.780 1.058 -0.017 1.315 sum -7.634 -12.213 2.154 14.563 Atomic orbital electron populations 1.20472 0.90572 1.01856 1.01500 1.19057 0.95985 0.91496 1.08587 1.20645 0.93696 0.96199 1.10652 1.17771 0.91939 0.93566 0.93686 1.19571 1.00813 0.96374 1.36966 0.91824 1.26562 0.98991 1.00202 0.92369 1.69915 1.18437 1.33712 1.25842 0.85302 0.77946 0.78346 0.78612 1.19048 1.19607 1.18564 1.20847 0.98847 0.92199 1.04215 1.20167 0.92801 0.96726 1.09408 1.17105 0.90185 0.85763 1.03484 1.43971 1.06954 1.00963 1.84895 1.19697 0.93884 0.82496 0.92754 1.22831 1.01198 1.02627 0.92112 1.22888 1.03746 0.95245 1.00439 1.22837 0.94575 0.99895 1.01503 1.22432 1.03064 1.00254 0.91490 1.23041 0.98103 0.97481 1.01770 1.22886 1.00295 1.00612 0.97458 0.91708 0.92420 0.91452 0.89133 0.91081 0.88743 0.88389 0.76916 0.92834 0.87564 0.90129 0.89863 0.88711 0.87851 0.86065 0.89690 0.86670 0.87201 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.80 9.56 71.24 0.68 -2.12 16 2 C -0.15 -6.29 5.86 -19.99 -0.12 -6.40 16 3 C -0.19 -9.69 9.37 22.47 0.21 -9.47 16 4 C 0.03 1.88 5.56 -21.27 -0.12 1.76 16 5 C -0.51 -29.15 9.04 23.38 0.21 -28.93 16 6 H 0.06 3.58 7.88 -2.91 -0.02 3.56 16 7 C 0.03 1.58 5.21 85.22 0.44 2.03 16 8 N -0.85 -47.84 10.85 21.81 0.24 -47.60 16 9 Si 0.98 41.47 29.58 68.60 2.03 43.50 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 13 C -0.14 -7.75 8.61 22.48 0.19 -7.56 16 14 C -0.17 -7.95 8.94 22.15 0.20 -7.75 16 15 C 0.13 5.52 4.87 38.67 0.19 5.71 16 16 N -0.73 -22.82 3.94 -318.54 -1.25 -24.08 16 17 C 0.22 5.97 2.28 44.99 0.10 6.08 16 18 C -0.17 -4.33 5.80 -10.79 -0.06 -4.39 16 19 C -0.19 -5.46 9.49 30.59 0.29 -5.17 16 20 C -0.15 -3.33 9.49 30.60 0.29 -3.04 16 21 C -0.15 -3.21 5.13 -10.79 -0.06 -3.26 16 22 C -0.17 -3.18 10.18 30.62 0.31 -2.87 16 23 C -0.18 -3.65 10.13 30.62 0.31 -3.34 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.80 8.08 -2.38 -0.02 1.78 16 26 H 0.07 1.85 6.52 -2.39 -0.02 1.83 16 27 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 28 H 0.28 14.37 8.30 -92.70 -0.77 13.60 16 29 H 0.09 5.55 6.17 -2.91 -0.02 5.54 16 30 H 0.10 4.32 6.17 -2.91 -0.02 4.30 16 31 H 0.39 10.89 6.56 -92.71 -0.61 10.28 16 32 H 0.05 1.75 6.11 -2.39 -0.01 1.73 16 33 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 2.96 5.79 -2.39 -0.01 2.94 16 36 H 0.09 1.96 8.13 -2.39 -0.02 1.94 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.12 2.16 7.63 -2.39 -0.02 2.14 16 39 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -62.20 335.64 4.49 -57.70 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: 0.40 Total: 39.22 kcal Atomic # 6 Polarization: -71.82 SS G_CDS: 3.08 Total: -68.74 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.02 Total: -71.68 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -62.20 4.49 -57.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168743621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.661 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds