Wall clock time and date at job start Mon Mar 30 2020 01:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36351 * 120.08319 * 2 1 4 4 C 1.39548 * 120.16556 * 179.97438 * 3 2 1 5 5 N 1.38856 * 119.84662 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99838 * 191.06036 * 5 4 3 7 7 C 1.53003 * 109.47001 * 130.26263 * 6 5 4 8 8 C 1.52994 * 117.49816 * 2.94977 * 7 6 5 9 9 C 1.53002 * 117.49721 * 294.29011 * 7 6 5 10 10 C 1.52997 * 109.46622 * 250.26158 * 6 5 4 11 11 C 1.52998 * 117.49824 * 134.06752 * 10 6 5 12 12 C 1.53000 * 117.50350 * 65.40814 * 10 6 5 13 13 C 1.39594 * 120.31350 * 359.97438 * 4 3 2 14 14 C 1.36322 * 120.15900 * 0.02562 * 13 4 3 15 15 C 1.40874 * 120.08257 * 179.97438 * 2 1 3 16 16 C 1.41134 * 120.15063 * 0.04825 * 15 2 1 17 17 H 1.08002 * 120.00758 * 334.62049 * 16 15 2 18 18 C 1.39870 * 119.99855 * 154.62040 * 16 15 2 19 19 N 1.30907 * 119.99867 * 341.59410 * 18 16 15 20 20 Si 1.86802 * 120.00153 * 161.59238 * 18 16 15 21 21 H 1.48503 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47220 * 120.00184 * 20 18 16 23 23 H 1.48504 * 109.47156 * 240.00311 * 20 18 16 24 24 H 1.09002 * 109.46878 * 270.02125 * 1 2 3 25 25 H 1.08996 * 109.46812 * 30.02011 * 1 2 3 26 26 H 1.08997 * 109.47272 * 150.02738 * 1 2 3 27 27 H 1.08001 * 119.91537 * 359.97438 * 3 2 1 28 28 H 0.96994 * 119.99780 * 11.05690 * 5 4 3 29 29 H 1.08997 * 109.47415 * 10.25937 * 6 5 4 30 30 H 1.09004 * 115.54884 * 148.61794 * 7 6 5 31 31 H 1.09000 * 117.50383 * 359.97438 * 8 7 6 32 32 H 1.09002 * 117.50133 * 145.01819 * 8 7 6 33 33 H 1.09000 * 117.49654 * 214.97899 * 9 7 6 34 34 H 1.08995 * 117.49618 * 359.97438 * 9 7 6 35 35 H 1.09004 * 115.54884 * 279.72970 * 10 6 5 36 36 H 1.09000 * 117.50186 * 0.02562 * 11 10 6 37 37 H 1.09001 * 117.50154 * 145.01816 * 11 10 6 38 38 H 1.08997 * 117.49678 * 214.97821 * 12 10 6 39 39 H 1.09001 * 117.49260 * 359.97134 * 12 10 6 40 40 H 1.07995 * 119.91943 * 180.02562 * 13 4 3 41 41 H 1.08001 * 120.08423 * 180.27774 * 14 13 4 42 42 H 0.96996 * 119.99637 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1798 0.0000 4 6 3.5860 1.1819 0.0005 5 7 4.2753 2.3872 0.0011 6 6 5.7199 2.4050 -0.2418 7 6 6.0436 3.4442 -1.3171 8 6 4.8845 4.2808 -1.8625 9 6 5.5143 3.1876 -2.7295 10 6 6.4502 2.7664 1.0532 11 6 7.6664 1.9216 1.4377 12 6 6.3567 1.7774 2.2168 13 6 4.2923 -0.0222 0.0016 14 6 3.6221 -1.2093 0.0016 15 6 2.2131 -1.2190 0.0005 16 6 1.5124 -2.4441 0.0001 17 1 0.5105 -2.4934 0.4002 18 6 2.1156 -3.5945 -0.5187 19 7 3.1494 -3.4892 -1.3148 20 14 1.4461 -5.2811 -0.0753 21 1 0.2813 -5.1282 0.8331 22 1 1.0201 -5.9852 -1.3115 23 1 2.5042 -6.0708 0.6044 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6505 2.1151 -0.0004 28 1 3.8003 3.2174 0.1622 29 1 6.0438 1.4203 -0.5788 30 1 7.0149 3.9301 -1.2240 31 1 3.8913 4.0906 -1.4557 32 1 5.0933 5.3169 -2.1288 33 1 6.1372 3.5050 -3.5657 34 1 4.9359 2.2783 -2.8927 35 1 6.4780 3.8286 1.2964 36 1 7.9466 1.1086 0.7680 37 1 8.4942 2.4279 1.9344 38 1 6.3233 2.1889 3.2255 39 1 5.7745 0.8694 2.0598 40 1 5.3722 -0.0132 0.0025 41 1 4.1698 -2.1402 0.0070 42 1 3.5680 -4.2871 -1.6742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168744357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:00 Heat of formation + Delta-G solvation = 57.589556 kcal Electronic energy + Delta-G solvation = -20742.557691 eV Core-core repulsion = 17881.037244 eV Total energy + Delta-G solvation = -2861.520446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53031 -39.06627 -37.20449 -35.90648 -34.45779 -32.60891 -30.72969 -28.56152 -27.30466 -25.79203 -23.40671 -23.19962 -22.64643 -22.03505 -21.72538 -20.08472 -18.98082 -17.85288 -17.06440 -16.74796 -16.47788 -15.86797 -15.54724 -15.12454 -14.97105 -14.45660 -14.26668 -14.02139 -13.52448 -13.42083 -13.12886 -12.83749 -12.76423 -12.71658 -12.45837 -12.32701 -12.30059 -12.22472 -12.11797 -11.44801 -11.33142 -11.24283 -11.20868 -11.00239 -10.86222 -10.65504 -10.11648 -9.16248 -8.51693 -8.08933 -5.93752 1.12003 1.21653 1.40068 1.53666 1.59714 2.28169 2.64360 2.87442 2.96148 3.29069 3.62468 3.84012 4.03363 4.10009 4.16570 4.21809 4.25097 4.41298 4.50023 4.52649 4.69654 4.78376 4.82718 4.83177 4.85985 4.97733 5.05995 5.06236 5.09836 5.19778 5.30384 5.31115 5.32798 5.35199 5.36841 5.40943 5.54460 5.79306 5.95205 6.01675 6.26622 6.48019 6.73178 6.94620 7.14562 7.21662 7.39141 8.51776 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.005074 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.307808 B = 5516.516216 C = 5945.657134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.167 4.167 3 C -0.170 4.170 4 C 0.125 3.875 5 N -0.737 5.737 6 C 0.213 3.787 7 C -0.156 4.156 8 C -0.165 4.165 9 C -0.186 4.186 10 C -0.154 4.154 11 C -0.166 4.166 12 C -0.186 4.186 13 C -0.177 4.177 14 C -0.143 4.143 15 C 0.036 3.964 16 C -0.494 4.494 17 H 0.071 0.929 18 C 0.031 3.969 19 N -0.844 5.844 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.270 1.270 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.395 0.605 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 12.362 1.836 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.169 4.169 3 C -0.192 4.192 4 C 0.026 3.974 5 N -0.371 5.371 6 C 0.106 3.894 7 C -0.175 4.175 8 C -0.202 4.202 9 C -0.223 4.223 10 C -0.174 4.174 11 C -0.204 4.204 12 C -0.223 4.223 13 C -0.199 4.199 14 C -0.163 4.163 15 C 0.033 3.967 16 C -0.526 4.526 17 H 0.090 0.910 18 C -0.180 4.180 19 N -0.473 5.473 20 Si 0.792 3.208 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.195 1.195 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.230 0.770 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.646 12.157 1.653 13.953 hybrid contribution -0.371 -1.028 0.039 1.093 sum 6.275 11.129 1.692 12.888 Atomic orbital electron populations 1.20390 0.91824 1.00968 1.00521 1.19739 0.95881 0.92655 1.08580 1.19972 0.92131 0.96862 1.10215 1.17362 0.90545 0.86060 1.03444 1.43953 1.06066 1.04717 1.82330 1.19785 0.80769 0.97296 0.91524 1.22733 0.99471 1.01397 0.93902 1.22964 0.97619 0.96472 1.03147 1.22866 1.04557 1.00431 0.94488 1.22705 1.01167 0.97651 0.95875 1.23024 0.91702 1.02403 1.03256 1.22835 1.01242 1.01442 0.96767 1.20175 0.97440 0.92032 1.10254 1.20789 0.94809 0.96143 1.04532 1.17680 0.92125 0.92852 0.94013 1.19563 1.01801 0.93637 1.37558 0.91042 1.26576 0.94664 1.04388 0.92368 1.69950 1.21128 1.32001 1.24177 0.85347 0.79166 0.77360 0.78930 1.18273 1.19577 1.19518 0.92775 0.92056 0.93347 0.86969 0.76962 0.92053 0.85444 0.89300 0.87081 0.87511 0.91801 0.86424 0.89694 0.86715 0.88246 0.91248 0.88596 0.89123 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.34 9.39 71.24 0.67 -2.67 16 2 C -0.17 -8.12 5.90 -19.66 -0.12 -8.23 16 3 C -0.17 -7.37 9.47 22.15 0.21 -7.16 16 4 C 0.13 5.24 6.64 38.67 0.26 5.50 16 5 N -0.74 -23.65 4.15 -318.53 -1.32 -24.97 16 6 C 0.21 5.99 2.59 44.99 0.12 6.10 16 7 C -0.16 -3.59 5.74 -10.79 -0.06 -3.66 16 8 C -0.16 -3.61 9.73 30.62 0.30 -3.31 16 9 C -0.19 -4.71 10.24 30.62 0.31 -4.40 16 10 C -0.15 -3.71 5.26 -10.80 -0.06 -3.77 16 11 C -0.17 -3.75 10.18 30.62 0.31 -3.43 16 12 C -0.19 -5.04 10.22 30.62 0.31 -4.73 16 13 C -0.18 -8.35 8.29 22.15 0.18 -8.17 16 14 C -0.14 -7.77 8.62 22.48 0.19 -7.58 16 15 C 0.04 1.99 5.56 -21.27 -0.12 1.88 16 16 C -0.49 -27.50 8.11 23.38 0.19 -27.31 16 17 H 0.07 3.85 6.86 -2.91 -0.02 3.83 16 18 C 0.03 1.67 5.11 85.23 0.44 2.11 16 19 N -0.84 -46.80 11.05 21.82 0.24 -46.56 16 20 Si 0.97 40.66 29.60 68.60 2.03 42.69 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 26 H 0.05 2.12 6.76 -2.39 -0.02 2.10 16 27 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 28 H 0.39 11.24 7.25 -92.71 -0.67 10.57 16 29 H 0.06 2.09 5.48 -2.39 -0.01 2.08 16 30 H 0.13 2.39 8.07 -2.38 -0.02 2.37 16 31 H 0.09 2.16 6.19 -2.39 -0.01 2.14 16 32 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 37 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.07 2.39 6.98 -2.39 -0.02 2.37 16 40 H 0.10 4.25 5.75 -2.91 -0.02 4.23 16 41 H 0.09 5.27 6.25 -2.91 -0.02 5.25 16 42 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 Total: -1.00 -60.79 336.26 4.43 -56.36 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: 0.35 Total: 41.31 kcal Atomic # 6 Polarization: -71.97 SS G_CDS: 3.14 Total: -68.83 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.08 Total: -71.53 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -60.79 4.43 -56.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168744357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.950 kcal (2) G-P(sol) polarization free energy of solvation -60.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds