Wall clock time and date at job start Mon Mar 30 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37974 * 119.72598 * 2 1 4 4 C 1.38224 * 119.77428 * 179.97438 * 3 2 1 5 5 C 1.37983 * 119.76756 * 359.86130 * 4 3 2 6 6 C 1.38866 * 120.54294 * 0.10936 * 5 4 3 7 7 C 1.37706 * 119.68748 * 359.82434 * 6 5 4 8 8 C 1.50637 * 122.55176 * 179.02706 * 7 6 5 9 9 C 1.52740 * 110.50955 * 18.44419 * 8 7 6 10 10 C 1.53323 * 108.38909 * 308.61545 * 9 8 7 11 11 H 1.09002 * 109.68111 * 310.12983 * 10 9 8 12 12 N 1.46902 * 109.67720 * 189.58182 * 10 9 8 13 13 C 1.47474 * 110.99995 * 166.02380 * 12 10 9 14 14 C 1.53515 * 87.93476 * 221.29502 * 13 12 10 15 15 C 1.50694 * 114.17008 * 139.66840 * 14 13 12 16 16 H 1.08005 * 120.00414 * 266.15901 * 15 14 13 17 17 C 1.37875 * 120.00281 * 86.16428 * 15 14 13 18 18 N 1.31521 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00494 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47109 * 90.00095 * 19 17 15 21 21 H 1.48501 * 109.47297 * 209.99994 * 19 17 15 22 22 H 1.48506 * 109.47154 * 330.00070 * 19 17 15 23 23 C 1.47481 * 111.00034 * 70.05201 * 12 10 9 24 24 C 1.50636 * 117.75537 * 180.31850 * 6 5 4 25 25 H 1.09007 * 109.46788 * 90.00295 * 1 2 3 26 26 H 1.08998 * 109.47529 * 330.00294 * 1 2 3 27 27 H 1.09001 * 109.46890 * 209.99308 * 1 2 3 28 28 H 1.08000 * 120.11514 * 359.93800 * 3 2 1 29 29 H 1.07998 * 120.11839 * 179.83712 * 4 3 2 30 30 H 1.08000 * 119.72391 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.48404 * 258.06286 * 8 7 6 32 32 H 1.09000 * 109.06753 * 138.56283 * 8 7 6 33 33 H 1.08995 * 109.68206 * 188.89488 * 9 8 7 34 34 H 1.08992 * 109.67917 * 68.34237 * 9 8 7 35 35 H 1.09001 * 113.48139 * 336.06368 * 13 12 10 36 36 H 1.09004 * 113.48182 * 106.52790 * 13 12 10 37 37 H 1.08994 * 114.34258 * 272.36675 * 14 13 12 38 38 H 0.96993 * 120.00411 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.47192 * 253.47195 * 23 12 10 40 40 H 1.09000 * 113.47172 * 23.87726 * 23 12 10 41 41 H 1.09004 * 109.24907 * 317.94748 * 24 6 5 42 42 H 1.09004 * 109.24978 * 77.37093 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1993 0.0005 5 6 4.2595 0.0022 0.0040 6 6 3.5727 -1.2048 0.0046 7 6 2.1957 -1.2059 0.0055 8 6 1.3862 -2.4761 -0.0154 9 6 2.2434 -3.6641 0.4168 10 6 3.5290 -3.6622 -0.4185 11 1 3.2799 -3.5683 -1.4756 12 7 4.2675 -4.9118 -0.1927 13 6 5.3192 -5.0954 -1.2101 14 6 4.9277 -6.5787 -1.2670 15 6 4.9192 -7.1618 -2.6565 16 1 4.0021 -7.1859 -3.2265 17 6 6.0821 -7.6647 -3.2003 18 7 7.1990 -7.6350 -2.5065 19 14 6.0715 -8.3881 -4.9225 20 1 6.3654 -7.3190 -5.9103 21 1 7.1053 -9.4497 -5.0199 22 1 4.7353 -8.9707 -5.2064 23 6 3.5625 -6.0586 -0.7953 24 6 4.3844 -2.4737 0.0158 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 0.8900 0.5138 27 1 -0.3633 -0.8901 0.5137 28 1 1.6486 2.1320 -0.0010 29 1 4.1146 2.1340 -0.0021 30 1 5.3395 0.0039 0.0048 31 1 1.0109 -2.6516 -1.0236 32 1 0.5439 -2.3728 0.6688 33 1 1.6970 -4.5919 0.2474 34 1 2.4922 -3.5719 1.4739 35 1 5.1238 -4.5589 -2.1386 36 1 6.3264 -4.9265 -0.8290 37 1 5.4414 -7.2072 -0.5396 38 1 8.0171 -7.9891 -2.8888 39 1 3.0808 -6.7059 -0.0624 40 1 2.8974 -5.7788 -1.6122 41 1 5.2264 -2.3678 -0.6682 42 1 4.7606 -2.6508 1.0234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171564682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:24 Heat of formation + Delta-G solvation = 39.542886 kcal Electronic energy + Delta-G solvation = -20577.667784 eV Core-core repulsion = 17715.364775 eV Total energy + Delta-G solvation = -2862.303009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33093 -38.84694 -35.46311 -33.72814 -32.54208 -30.25134 -29.80366 -27.04587 -26.68892 -24.96116 -24.12555 -22.91727 -21.40427 -20.74070 -19.13826 -18.62613 -16.68508 -16.16718 -15.55156 -15.40146 -14.67419 -14.44474 -14.16050 -14.01477 -13.80213 -13.53197 -12.96335 -12.91286 -12.64339 -12.45606 -12.25729 -11.96073 -11.61482 -11.44772 -11.24033 -11.16995 -11.08771 -10.93641 -10.73812 -10.56889 -10.35025 -9.96553 -9.61800 -9.12269 -8.89691 -8.51397 -8.45800 -8.42384 -7.95974 -6.04756 -4.09099 1.37588 1.42593 3.28874 3.36030 3.38953 3.74820 4.39930 4.63186 4.67309 4.85468 4.93959 4.99582 5.15134 5.22511 5.27506 5.30059 5.37537 5.45394 5.53861 5.65563 5.68285 5.75942 5.84594 5.91845 6.02929 6.05194 6.10236 6.17778 6.19676 6.27631 6.42590 6.51506 6.53636 6.59695 6.62097 6.70271 6.76770 6.83462 7.07409 7.15801 7.21766 7.73947 7.92908 8.12334 8.38758 8.94057 9.55842 11.04863 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029386 B = 0.003926 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.610619 B = 7130.173597 C = 7350.360222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.060 4.060 7 C -0.076 4.076 8 C -0.080 4.080 9 C -0.109 4.109 10 C 0.053 3.947 11 H 0.045 0.955 12 N -0.480 5.480 13 C 0.006 3.994 14 C 0.041 3.959 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.003 4.003 24 C -0.072 4.072 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 15.329 5.595 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.061 4.061 7 C -0.076 4.076 8 C -0.118 4.118 9 C -0.147 4.147 10 C -0.056 4.056 11 H 0.063 0.937 12 N -0.202 5.202 13 C -0.123 4.123 14 C 0.022 3.978 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.131 4.131 24 C -0.109 4.109 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.061 15.314 6.314 19.380 hybrid contribution -0.038 -0.020 -1.883 1.884 sum -10.098 15.293 4.431 18.854 Atomic orbital electron populations 1.20869 0.91579 1.02677 1.02236 1.19883 0.95847 0.92707 1.00544 1.20866 0.94313 0.97128 1.02488 1.20994 0.94319 0.97756 1.00858 1.21159 0.99868 0.91987 1.01471 1.19723 0.92957 0.95160 0.98233 1.19513 0.92951 0.94473 1.00653 1.20550 0.97534 0.91820 1.01846 1.21532 0.95494 0.97327 1.00298 1.22109 0.93793 0.92154 0.97556 0.93715 1.68916 1.08444 1.00827 1.42052 1.23995 0.94992 1.01533 0.91774 1.20096 0.89546 0.91383 0.96786 1.21044 0.95036 1.39896 0.99464 0.92500 1.25010 0.95653 0.95315 0.97591 1.69967 0.99593 1.45786 1.37028 0.86632 0.77861 0.78949 0.84794 1.20677 1.21136 1.19824 1.23953 0.99476 0.93234 0.96480 1.20432 0.97292 0.90390 1.02774 0.91286 0.91892 0.91129 0.86511 0.86376 0.86250 0.90789 0.90656 0.91300 0.91368 0.93044 0.91865 0.91811 0.92887 0.92156 0.92924 0.90855 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.52 36.01 0.34 -0.71 16 2 C -0.09 -1.06 5.89 -104.48 -0.61 -1.68 16 3 C -0.13 -1.45 9.68 -39.68 -0.38 -1.84 16 4 C -0.12 -1.39 10.05 -39.68 -0.40 -1.79 16 5 C -0.13 -1.64 9.61 -39.44 -0.38 -2.02 16 6 C -0.06 -0.86 5.74 -104.62 -0.60 -1.46 16 7 C -0.08 -1.02 5.74 -104.61 -0.60 -1.62 16 8 C -0.08 -1.00 4.99 -28.05 -0.14 -1.14 16 9 C -0.11 -1.57 5.43 -26.70 -0.14 -1.72 16 10 C 0.05 0.90 1.53 -67.68 -0.10 0.80 16 11 H 0.04 0.82 7.54 -51.93 -0.39 0.43 16 12 N -0.48 -9.61 6.13 -236.56 -1.45 -11.06 16 13 C 0.01 0.14 6.77 -7.55 -0.05 0.08 16 14 C 0.04 1.03 3.77 -91.24 -0.34 0.68 16 15 C -0.52 -14.07 8.82 -34.44 -0.30 -14.37 16 16 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 17 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 18 N -0.89 -25.57 13.26 55.43 0.74 -24.84 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.00 -0.06 6.28 -7.55 -0.05 -0.10 16 24 C -0.07 -1.12 4.98 -28.05 -0.14 -1.26 16 25 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.38 8.05 -52.49 -0.42 0.96 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.80 6.27 -51.93 -0.33 0.47 16 33 H 0.07 1.00 7.33 -51.93 -0.38 0.62 16 34 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.05 1.20 7.66 -51.93 -0.40 0.80 16 36 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.09 7.74 -51.93 -0.40 0.69 16 41 H 0.07 1.18 7.91 -51.93 -0.41 0.76 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -28.58 330.18 -11.57 -40.15 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.80 Total: 1.10 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -4.01 Total: -26.38 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.72 Total: -35.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.58 -11.57 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171564682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.691 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds