Wall clock time and date at job start Mon Mar 30 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37974 * 119.72598 * 2 1 4 4 C 1.38224 * 119.77428 * 179.97438 * 3 2 1 5 5 C 1.37983 * 119.76756 * 359.86130 * 4 3 2 6 6 C 1.38866 * 120.54294 * 0.10936 * 5 4 3 7 7 C 1.37706 * 119.68748 * 359.82434 * 6 5 4 8 8 C 1.50637 * 122.55176 * 179.02706 * 7 6 5 9 9 C 1.52740 * 110.50955 * 18.44419 * 8 7 6 10 10 C 1.53323 * 108.38909 * 308.61545 * 9 8 7 11 11 H 1.09002 * 109.68111 * 310.12983 * 10 9 8 12 12 N 1.46902 * 109.67720 * 189.58182 * 10 9 8 13 13 C 1.47474 * 110.99995 * 166.02380 * 12 10 9 14 14 C 1.53515 * 87.93476 * 221.29502 * 13 12 10 15 15 C 1.50694 * 114.17008 * 139.66840 * 14 13 12 16 16 H 1.08005 * 120.00414 * 266.15901 * 15 14 13 17 17 C 1.37875 * 120.00281 * 86.16428 * 15 14 13 18 18 N 1.31521 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00494 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47109 * 90.00095 * 19 17 15 21 21 H 1.48501 * 109.47297 * 209.99994 * 19 17 15 22 22 H 1.48506 * 109.47154 * 330.00070 * 19 17 15 23 23 C 1.47481 * 111.00034 * 70.05201 * 12 10 9 24 24 C 1.50636 * 117.75537 * 180.31850 * 6 5 4 25 25 H 1.09007 * 109.46788 * 90.00295 * 1 2 3 26 26 H 1.08998 * 109.47529 * 330.00294 * 1 2 3 27 27 H 1.09001 * 109.46890 * 209.99308 * 1 2 3 28 28 H 1.08000 * 120.11514 * 359.93800 * 3 2 1 29 29 H 1.07998 * 120.11839 * 179.83712 * 4 3 2 30 30 H 1.08000 * 119.72391 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.48404 * 258.06286 * 8 7 6 32 32 H 1.09000 * 109.06753 * 138.56283 * 8 7 6 33 33 H 1.08995 * 109.68206 * 188.89488 * 9 8 7 34 34 H 1.08992 * 109.67917 * 68.34237 * 9 8 7 35 35 H 1.09001 * 113.48139 * 336.06368 * 13 12 10 36 36 H 1.09004 * 113.48182 * 106.52790 * 13 12 10 37 37 H 1.08994 * 114.34258 * 272.36675 * 14 13 12 38 38 H 0.96993 * 120.00411 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.47192 * 253.47195 * 23 12 10 40 40 H 1.09000 * 113.47172 * 23.87726 * 23 12 10 41 41 H 1.09004 * 109.24907 * 317.94748 * 24 6 5 42 42 H 1.09004 * 109.24978 * 77.37093 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1993 0.0005 5 6 4.2595 0.0022 0.0040 6 6 3.5727 -1.2048 0.0046 7 6 2.1957 -1.2059 0.0055 8 6 1.3862 -2.4761 -0.0154 9 6 2.2434 -3.6641 0.4168 10 6 3.5290 -3.6622 -0.4185 11 1 3.2799 -3.5683 -1.4756 12 7 4.2675 -4.9118 -0.1927 13 6 5.3192 -5.0954 -1.2101 14 6 4.9277 -6.5787 -1.2670 15 6 4.9192 -7.1618 -2.6565 16 1 4.0021 -7.1859 -3.2265 17 6 6.0821 -7.6647 -3.2003 18 7 7.1990 -7.6350 -2.5065 19 14 6.0715 -8.3881 -4.9225 20 1 6.3654 -7.3190 -5.9103 21 1 7.1053 -9.4497 -5.0199 22 1 4.7353 -8.9707 -5.2064 23 6 3.5625 -6.0586 -0.7953 24 6 4.3844 -2.4737 0.0158 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 0.8900 0.5138 27 1 -0.3633 -0.8901 0.5137 28 1 1.6486 2.1320 -0.0010 29 1 4.1146 2.1340 -0.0021 30 1 5.3395 0.0039 0.0048 31 1 1.0109 -2.6516 -1.0236 32 1 0.5439 -2.3728 0.6688 33 1 1.6970 -4.5919 0.2474 34 1 2.4922 -3.5719 1.4739 35 1 5.1238 -4.5589 -2.1386 36 1 6.3264 -4.9265 -0.8290 37 1 5.4414 -7.2072 -0.5396 38 1 8.0171 -7.9891 -2.8888 39 1 3.0808 -6.7059 -0.0624 40 1 2.8974 -5.7788 -1.6122 41 1 5.2264 -2.3678 -0.6682 42 1 4.7606 -2.6508 1.0234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171564682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:24 Heat of formation + Delta-G solvation = 24.323127 kcal Electronic energy + Delta-G solvation = -20578.327762 eV Core-core repulsion = 17715.364775 eV Total energy + Delta-G solvation = -2862.962987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53964 -40.30798 -36.70277 -34.71126 -34.50026 -31.54171 -30.88592 -28.72862 -27.56511 -26.65541 -25.87049 -24.11831 -22.73295 -21.67030 -20.51724 -20.34185 -18.59302 -17.25169 -16.88635 -16.62060 -16.34690 -15.97340 -15.41533 -15.27299 -15.12602 -14.58724 -14.30704 -13.99320 -13.80266 -13.63405 -13.49621 -13.29799 -13.11718 -12.89741 -12.83703 -12.63523 -12.39628 -12.29643 -12.17088 -11.90299 -11.82362 -11.45295 -11.15982 -11.02015 -10.77169 -10.49234 -9.69977 -9.44214 -9.41009 -8.16011 -6.27488 0.45340 0.48069 1.41694 1.42364 1.53125 2.41608 2.81749 3.13034 3.19812 3.60865 3.79099 4.00243 4.03735 4.06411 4.18524 4.21171 4.28214 4.40398 4.45912 4.48349 4.58544 4.61063 4.64462 4.79083 4.83589 4.83954 4.89198 4.93613 4.95677 5.00983 5.06419 5.08585 5.20698 5.29772 5.31315 5.37998 5.52713 5.61247 5.62276 5.68636 5.80542 5.84744 6.17010 6.29384 6.41000 6.81797 7.41069 8.93863 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029386 B = 0.003926 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.610619 B = 7130.173597 C = 7350.360222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.123 4.123 5 C -0.142 4.142 6 C -0.083 4.083 7 C -0.093 4.093 8 C -0.074 4.074 9 C -0.102 4.102 10 C 0.053 3.947 11 H 0.032 0.968 12 N -0.476 5.476 13 C 0.019 3.981 14 C 0.021 3.979 15 C -0.532 4.532 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.922 5.922 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.264 1.264 23 C 0.014 3.986 24 C -0.064 4.064 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 16.971 5.291 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.084 4.084 7 C -0.093 4.093 8 C -0.111 4.111 9 C -0.140 4.140 10 C -0.056 4.056 11 H 0.050 0.950 12 N -0.198 5.198 13 C -0.111 4.111 14 C 0.002 3.998 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.782 3.218 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.189 1.189 23 C -0.114 4.114 24 C -0.101 4.101 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.296 16.962 6.017 21.797 hybrid contribution 0.648 -0.462 -1.739 1.912 sum -11.648 16.500 4.278 20.646 Atomic orbital electron populations 1.20925 0.89429 1.03857 1.03031 1.20232 0.97491 0.92225 0.99538 1.21267 0.94356 0.98136 1.01113 1.21318 0.94890 0.98058 0.99796 1.21315 1.00339 0.92319 1.02054 1.19678 0.93606 0.94655 1.00440 1.19698 0.92673 0.95635 1.01274 1.20532 0.97610 0.90392 1.02555 1.21486 0.94272 0.98620 0.99636 1.22157 0.95062 0.90905 0.97466 0.95009 1.68861 1.07873 1.02305 1.40736 1.23696 0.95121 1.00066 0.92177 1.20053 0.92369 0.91865 0.95506 1.21377 0.95189 1.40006 1.00404 0.92344 1.25829 0.95230 0.95765 1.01589 1.70094 1.00211 1.46853 1.38896 0.85569 0.78166 0.78177 0.79844 1.20134 1.20818 1.18851 1.23754 0.97513 0.93306 0.96856 1.20289 0.96968 0.90995 1.01849 0.90545 0.90179 0.90554 0.83772 0.83978 0.85922 0.90528 0.88220 0.91157 0.91447 0.93804 0.93568 0.95023 0.92830 0.90694 0.92373 0.92314 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.52 71.24 0.68 -1.00 16 2 C -0.09 -1.99 5.89 -19.77 -0.12 -2.10 16 3 C -0.13 -2.53 9.68 22.20 0.22 -2.31 16 4 C -0.12 -2.55 10.05 22.21 0.22 -2.32 16 5 C -0.14 -3.57 9.61 22.36 0.21 -3.36 16 6 C -0.08 -2.35 5.74 -19.86 -0.11 -2.46 16 7 C -0.09 -2.34 5.74 -19.86 -0.11 -2.45 16 8 C -0.07 -1.69 4.99 29.74 0.15 -1.54 16 9 C -0.10 -2.85 5.43 30.62 0.17 -2.68 16 10 C 0.05 1.81 1.53 44.93 0.07 1.88 16 11 H 0.03 1.18 7.54 -2.39 -0.02 1.16 16 12 N -0.48 -19.37 6.13 -902.35 -5.53 -24.91 16 13 C 0.02 0.89 6.77 83.57 0.57 1.46 16 14 C 0.02 1.10 3.77 -11.20 -0.04 1.05 16 15 C -0.53 -29.48 8.82 25.60 0.23 -29.25 16 16 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 17 C 0.02 0.85 5.46 84.65 0.46 1.31 16 18 N -0.92 -54.59 13.26 21.45 0.28 -54.31 16 19 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 C 0.01 0.61 6.28 83.57 0.52 1.13 16 24 C -0.06 -2.03 4.98 29.74 0.15 -1.88 16 25 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.08 1.01 5.95 -2.39 -0.01 1.00 16 28 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.12 2.85 8.05 -2.91 -0.02 2.83 16 31 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.10 1.80 6.27 -2.39 -0.01 1.78 16 33 H 0.07 1.93 7.33 -2.39 -0.02 1.91 16 34 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.04 2.12 7.66 -2.39 -0.02 2.11 16 36 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.03 1.82 8.11 -2.39 -0.02 1.80 16 38 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.06 2.39 7.74 -2.39 -0.02 2.37 16 41 H 0.06 1.98 7.91 -2.38 -0.02 1.96 16 42 H 0.08 2.48 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -62.28 330.18 1.01 -61.27 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.98 Total: 16.93 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 3.25 Total: -44.52 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -5.25 Total: -79.22 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.28 1.01 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171564682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.590 kcal (2) G-P(sol) polarization free energy of solvation -62.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds