Wall clock time and date at job start Mon Mar 30 2020 01:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37978 * 119.72607 * 2 1 4 4 C 1.38225 * 119.77489 * 179.97438 * 3 2 1 5 5 C 1.37971 * 119.76983 * 0.10223 * 4 3 2 6 6 C 1.38921 * 120.53404 * 359.96105 * 5 4 3 7 7 C 1.37663 * 119.68488 * 359.89712 * 6 5 4 8 8 C 1.50630 * 122.55489 * 180.27983 * 7 6 5 9 9 C 1.52740 * 110.58603 * 342.43392 * 8 7 6 10 10 C 1.53335 * 108.37738 * 51.06212 * 9 8 7 11 11 H 1.08998 * 109.68246 * 49.78164 * 10 9 8 12 12 N 1.46891 * 109.71336 * 170.32470 * 10 9 8 13 13 C 1.47480 * 111.00297 * 274.90528 * 12 10 9 14 14 C 1.53513 * 87.93690 * 221.29899 * 13 12 10 15 15 C 1.50696 * 114.16999 * 139.67008 * 14 13 12 16 16 H 1.08008 * 119.99802 * 266.15493 * 15 14 13 17 17 C 1.37875 * 120.00000 * 86.16352 * 15 14 13 18 18 N 1.31505 * 120.00200 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99841 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47035 * 89.99854 * 19 17 15 21 21 H 1.48503 * 109.47130 * 209.99657 * 19 17 15 22 22 H 1.48496 * 109.47459 * 329.99731 * 19 17 15 23 23 C 1.47490 * 111.00078 * 178.93557 * 12 10 9 24 24 C 1.50635 * 117.71726 * 179.74901 * 6 5 4 25 25 H 1.09004 * 109.46684 * 270.01425 * 1 2 3 26 26 H 1.08996 * 109.47104 * 30.01973 * 1 2 3 27 27 H 1.09007 * 109.46817 * 150.02052 * 1 2 3 28 28 H 1.08005 * 120.11192 * 359.94075 * 3 2 1 29 29 H 1.07999 * 120.11551 * 180.12767 * 4 3 2 30 30 H 1.08005 * 119.72888 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.25573 * 222.14939 * 8 7 6 32 32 H 1.09003 * 109.25534 * 102.71604 * 8 7 6 33 33 H 1.09005 * 109.68082 * 291.34578 * 9 8 7 34 34 H 1.08998 * 109.68338 * 170.78120 * 9 8 7 35 35 H 1.09003 * 113.47734 * 336.06655 * 13 12 10 36 36 H 1.08999 * 113.47282 * 106.53007 * 13 12 10 37 37 H 1.08999 * 114.16919 * 272.38231 * 14 13 12 38 38 H 0.97003 * 120.00764 * 180.02562 * 18 17 15 39 39 H 1.08996 * 113.47652 * 253.47517 * 23 12 10 40 40 H 1.08999 * 113.47427 * 23.93631 * 23 12 10 41 41 H 1.09002 * 109.25463 * 42.27851 * 24 6 5 42 42 H 1.08998 * 109.25222 * 282.80848 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1994 0.0005 5 6 4.2595 0.0023 -0.0011 6 6 3.5723 -1.2050 -0.0024 7 6 2.1957 -1.2059 0.0000 8 6 1.3860 -2.4761 0.0050 9 6 2.2460 -3.6629 -0.4248 10 6 3.5267 -3.6623 0.4184 11 1 3.2712 -3.5693 1.4739 12 7 4.2665 -4.9118 0.1966 13 6 3.7680 -5.9847 1.0773 14 6 5.2280 -6.4019 1.3029 15 6 5.5455 -6.7930 2.7232 16 1 5.9418 -6.0592 3.4095 17 6 5.3303 -8.0874 3.1463 18 7 4.8475 -8.9807 2.3107 19 14 5.7246 -8.5723 4.9067 20 1 4.5275 -8.3582 5.7591 21 1 6.1135 -10.0048 4.9503 22 1 6.8461 -7.7394 5.4103 23 6 5.5184 -4.9303 0.9762 24 6 4.3846 -2.4735 -0.0100 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6485 2.1320 -0.0010 29 1 4.1145 2.1341 0.0026 30 1 5.3395 0.0040 -0.0002 31 1 0.5482 -2.3710 -0.6844 32 1 1.0035 -2.6546 1.0100 33 1 2.5014 -3.5681 -1.4803 34 1 1.6989 -4.5912 -0.2607 35 1 3.2780 -5.6147 1.9779 36 1 3.1774 -6.7366 0.5539 37 1 5.6099 -7.1067 0.5643 38 1 4.6957 -9.8914 2.6084 39 1 6.4112 -4.7887 0.3672 40 1 5.4956 -4.2789 1.8498 41 1 5.2224 -2.3679 0.6793 42 1 4.7666 -2.6497 -1.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171564683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:26 Heat of formation + Delta-G solvation = 24.708985 kcal Electronic energy + Delta-G solvation = -20580.286545 eV Core-core repulsion = 17717.340290 eV Total energy + Delta-G solvation = -2862.946255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54938 -40.30116 -36.70441 -34.72814 -34.47987 -31.54635 -30.87441 -28.74371 -27.56187 -26.68321 -25.80656 -24.18032 -22.72522 -21.65956 -20.50015 -20.33872 -18.59357 -17.26309 -16.87234 -16.53720 -16.41247 -16.05419 -15.41065 -15.21047 -15.05013 -14.66532 -14.30312 -14.06190 -13.79681 -13.62802 -13.47095 -13.27742 -13.14051 -12.88645 -12.85410 -12.62856 -12.33186 -12.23707 -12.17524 -12.03135 -11.82928 -11.41857 -11.16100 -11.02271 -10.77879 -10.49533 -9.69313 -9.43633 -9.40165 -8.15973 -6.27449 0.46159 0.48854 1.41664 1.42497 1.53186 2.41655 2.82528 3.12761 3.19987 3.60850 3.80248 4.00071 4.03839 4.04554 4.18157 4.22383 4.28542 4.40444 4.45890 4.48637 4.56175 4.59502 4.65717 4.79305 4.82514 4.84803 4.88856 4.92179 4.95404 5.01977 5.06084 5.08326 5.21156 5.26527 5.32280 5.37884 5.53852 5.61250 5.62853 5.69195 5.81064 5.84605 6.17527 6.29558 6.40862 6.81547 7.41063 8.93858 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030227 B = 0.003896 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.110953 B = 7185.939781 C = 7374.809894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.131 4.131 4 C -0.123 4.123 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.093 4.093 8 C -0.074 4.074 9 C -0.100 4.100 10 C 0.052 3.948 11 H 0.032 0.968 12 N -0.475 5.475 13 C 0.020 3.980 14 C 0.021 3.979 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.016 3.984 18 N -0.921 5.921 19 Si 0.957 3.043 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.012 3.988 24 C -0.066 4.066 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 19.833 -4.894 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.157 4.157 6 C -0.084 4.084 7 C -0.093 4.093 8 C -0.111 4.111 9 C -0.138 4.138 10 C -0.057 4.057 11 H 0.050 0.950 12 N -0.197 5.197 13 C -0.110 4.110 14 C 0.002 3.998 15 C -0.570 4.570 16 H 0.075 0.925 17 C -0.183 4.183 18 N -0.560 5.560 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.190 1.190 23 C -0.116 4.116 24 C -0.103 4.103 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.531 19.595 -5.655 21.741 hybrid contribution 0.317 -0.615 1.719 1.853 sum -7.214 18.981 -3.936 20.683 Atomic orbital electron populations 1.20923 0.89657 1.03778 1.02962 1.20214 0.97385 0.92307 0.99682 1.21262 0.94491 0.98002 1.01134 1.21329 0.94775 0.98206 0.99733 1.21336 1.00473 0.92091 1.01822 1.19685 0.93440 0.94846 1.00416 1.19662 0.92882 0.95382 1.01410 1.20515 0.97622 0.90622 1.02364 1.21419 0.94604 0.98105 0.99659 1.22172 0.95317 0.90753 0.97431 0.94996 1.68877 1.04346 1.04476 1.42006 1.23739 1.00217 0.93694 0.93309 1.20054 0.92403 0.91672 0.95643 1.21363 1.43401 0.95704 0.96561 0.92472 1.25813 0.94561 0.96435 1.01506 1.70085 1.45322 1.03814 1.36736 0.85576 0.78758 0.77453 0.80006 1.20039 1.20780 1.18997 1.23743 0.93943 0.98489 0.95474 1.20386 0.97058 0.90660 1.02197 0.90631 0.90144 0.90759 0.83859 0.83869 0.85452 0.88448 0.90852 0.91421 0.92179 0.93607 0.93347 0.95012 0.92793 0.90860 0.92591 0.91257 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.52 71.24 0.68 -1.09 16 2 C -0.10 -2.02 5.89 -19.77 -0.12 -2.14 16 3 C -0.13 -2.49 9.69 22.20 0.22 -2.27 16 4 C -0.12 -2.42 10.05 22.20 0.22 -2.20 16 5 C -0.14 -3.28 9.61 22.37 0.21 -3.07 16 6 C -0.08 -2.26 5.74 -19.86 -0.11 -2.37 16 7 C -0.09 -2.36 5.74 -19.87 -0.11 -2.48 16 8 C -0.07 -1.79 4.97 29.74 0.15 -1.64 16 9 C -0.10 -2.95 5.54 30.62 0.17 -2.78 16 10 C 0.05 1.79 1.61 44.94 0.07 1.86 16 11 H 0.03 1.19 7.47 -2.39 -0.02 1.17 16 12 N -0.47 -19.35 6.16 -902.26 -5.56 -24.90 16 13 C 0.02 0.93 7.04 83.58 0.59 1.52 16 14 C 0.02 1.11 3.77 -11.20 -0.04 1.06 16 15 C -0.53 -29.55 8.82 25.60 0.23 -29.32 16 16 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 17 C 0.02 0.91 5.46 84.66 0.46 1.37 16 18 N -0.92 -54.33 13.26 21.45 0.28 -54.05 16 19 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.01 0.52 6.18 83.58 0.52 1.04 16 24 C -0.07 -1.97 4.69 29.74 0.14 -1.83 16 25 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 26 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 27 H 0.07 1.07 5.94 -2.38 -0.01 1.05 16 28 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 29 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.13 2.65 8.05 -2.91 -0.02 2.63 16 31 H 0.10 1.91 6.28 -2.39 -0.02 1.90 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.98 8.10 -2.38 -0.02 1.96 16 34 H 0.06 1.86 7.97 -2.39 -0.02 1.85 16 35 H 0.05 2.19 7.50 -2.39 -0.02 2.18 16 36 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.03 1.83 8.11 -2.39 -0.02 1.81 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.06 2.34 7.61 -2.39 -0.02 2.33 16 41 H 0.07 2.09 7.33 -2.39 -0.02 2.07 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -61.87 329.96 1.00 -60.87 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.98 Total: 16.92 kcal Atomic # 6 Polarization: -47.60 SS G_CDS: 3.27 Total: -44.33 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -5.27 Total: -78.95 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -61.87 1.00 -60.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171564683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.574 kcal (2) G-P(sol) polarization free energy of solvation -61.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds