Wall clock time and date at job start Mon Mar 30 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00312 * 2 1 4 4 H 1.48495 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47157 * 300.00038 * 3 2 1 6 6 H 1.48499 * 109.47020 * 59.99794 * 3 2 1 7 7 C 1.37882 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00143 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99560 * 0.02562 * 7 2 1 10 10 C 1.53519 * 114.16674 * 180.02562 * 9 7 2 11 11 N 1.47481 * 87.93135 * 139.66940 * 10 9 7 12 12 C 1.46900 * 111.00215 * 221.29505 * 11 10 9 13 13 H 1.09003 * 110.53455 * 52.38636 * 12 11 10 14 14 C 1.54893 * 110.48634 * 289.78101 * 12 11 10 15 15 C 1.54891 * 102.74671 * 203.37866 * 14 12 11 16 16 C 1.54265 * 104.19759 * 37.93867 * 15 14 12 17 17 H 1.08997 * 110.07328 * 95.69542 * 16 15 14 18 18 C 1.50693 * 110.03255 * 217.10466 * 16 15 14 19 19 C 1.38233 * 120.00207 * 237.16262 * 18 16 15 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 16 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 C 1.38238 * 119.99693 * 0.02562 * 21 20 19 23 23 C 1.38234 * 120.00047 * 359.95697 * 22 21 20 24 24 C 1.53880 * 106.59890 * 336.39129 * 16 15 14 25 25 C 1.47478 * 87.83631 * 332.99122 * 11 10 9 26 26 H 0.96996 * 119.99841 * 359.97438 * 1 2 3 27 27 H 1.08997 * 113.38692 * 46.92543 * 9 7 2 28 28 H 1.09000 * 113.47619 * 24.90496 * 10 9 7 29 29 H 1.08993 * 113.47422 * 254.43906 * 10 9 7 30 30 H 1.09002 * 110.75014 * 321.69052 * 14 12 11 31 31 H 1.08992 * 110.75863 * 85.06051 * 14 12 11 32 32 H 1.09004 * 110.48268 * 279.25844 * 15 14 12 33 33 H 1.09001 * 110.48787 * 156.61903 * 15 14 12 34 34 H 1.08002 * 120.00157 * 0.02562 * 19 18 16 35 35 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 36 36 H 1.07997 * 120.00475 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.99658 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.99990 * 180.02562 * 23 22 21 39 39 H 1.09003 * 110.03127 * 119.28279 * 24 16 15 40 40 H 1.08993 * 110.02975 * 240.71406 * 24 16 15 41 41 H 1.08996 * 113.47796 * 141.77728 * 25 11 10 42 42 H 1.09006 * 113.47275 * 272.24194 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.1495 -3.7439 0.0018 11 7 1.2067 -4.3580 0.9552 12 6 1.9242 -5.0854 2.0106 13 1 2.6726 -4.4441 2.4761 14 6 2.5866 -6.3618 1.4350 15 6 2.7376 -7.2624 2.6861 16 6 1.4522 -7.0008 3.4980 17 1 0.7067 -7.7638 3.2743 18 6 1.7639 -7.0008 4.9723 19 6 1.1046 -7.8729 5.8182 20 6 1.3946 -7.8768 7.1698 21 6 2.3400 -7.0047 7.6764 22 6 2.9950 -6.1284 6.8314 23 6 2.7053 -6.1248 5.4798 24 6 0.9350 -5.6166 3.0684 25 6 0.8543 -2.9960 1.3978 26 1 -0.4850 0.8400 0.0004 27 1 0.4432 -2.5323 -0.7305 28 1 3.1386 -3.5649 0.4235 29 1 2.1870 -4.2533 -0.9610 30 1 1.9390 -6.8331 0.6957 31 1 3.5613 -6.1310 1.0053 32 1 3.6174 -6.9726 3.2608 33 1 2.7988 -8.3113 2.3960 34 1 0.3664 -8.5547 5.4224 35 1 0.8828 -8.5613 7.8299 36 1 2.5663 -7.0074 8.7324 37 1 3.7334 -5.4468 7.2272 38 1 3.2173 -5.4405 4.8195 39 1 -0.0611 -5.7081 2.6355 40 1 0.9095 -4.9449 3.9264 41 1 -0.2059 -2.8717 1.6181 42 1 1.4978 -2.6175 2.1921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172556544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:35 Heat of formation + Delta-G solvation = 43.191248 kcal Electronic energy + Delta-G solvation = -20364.652957 eV Core-core repulsion = 17502.508153 eV Total energy + Delta-G solvation = -2862.144804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01513 -38.90895 -36.66643 -32.68334 -31.57782 -30.92911 -29.10730 -27.93980 -26.13403 -24.63545 -23.43497 -22.72173 -22.01075 -19.94832 -19.34109 -18.62910 -16.99095 -16.62194 -15.70530 -15.27567 -15.04560 -14.65229 -14.28440 -14.07863 -13.47303 -13.37218 -13.15093 -13.05676 -12.83869 -12.37270 -11.84390 -11.57388 -11.38416 -11.21192 -11.16067 -11.02882 -10.97733 -10.68475 -10.59610 -10.44948 -10.39697 -10.05889 -9.63866 -9.12242 -8.96981 -8.89234 -8.66507 -8.42302 -7.94275 -6.04420 -4.08626 1.31198 1.34579 3.28036 3.36385 3.39884 3.72207 4.40681 4.60067 4.68431 4.82187 4.92334 4.94740 4.95188 5.08601 5.25838 5.40138 5.45705 5.49876 5.61605 5.70203 5.72661 5.80282 5.92320 5.96195 6.01539 6.04270 6.12981 6.18929 6.30861 6.35280 6.41869 6.44929 6.47704 6.56585 6.64066 6.67612 6.72162 6.83477 6.96320 7.17673 7.23847 7.74594 7.93788 8.16112 8.39650 8.94814 9.56267 11.05226 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.003887 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.886232 B = 7201.857364 C = 7762.684462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.040 3.960 10 C -0.003 4.003 11 N -0.477 5.477 12 C 0.047 3.953 13 H 0.045 0.955 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.053 4.053 17 H 0.078 0.922 18 C -0.065 4.065 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.104 4.104 25 C 0.006 3.994 26 H 0.261 0.739 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -15.350 11.374 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.021 3.979 10 C -0.132 4.132 11 N -0.200 5.200 12 C -0.062 4.062 13 H 0.063 0.937 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.072 4.072 17 H 0.096 0.904 18 C -0.065 4.065 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.123 4.123 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.474 -15.723 11.171 19.598 hybrid contribution 1.078 1.450 0.601 1.904 sum 4.552 -14.273 11.772 19.053 Atomic orbital electron populations 1.69980 1.05976 1.26583 1.49815 1.25019 0.94812 0.99134 0.94659 0.86577 0.80185 0.83849 0.77643 1.19740 1.20901 1.21012 1.21084 0.92754 0.90331 1.51190 0.92456 1.20113 0.94300 0.90879 0.92589 1.23934 0.95715 0.97578 0.95943 1.68961 1.26989 1.14014 1.09997 1.23021 0.94705 0.95316 0.93208 0.93660 1.22489 1.00270 0.95374 0.97067 1.22444 0.96772 0.99620 0.96320 1.20813 0.97844 0.98586 0.89977 0.90359 1.19993 0.95693 0.95340 0.95518 1.21086 1.00065 0.99296 0.93479 1.21104 0.98228 0.99212 0.95379 1.21103 0.97473 0.96781 0.99541 1.21156 0.99902 0.98929 0.93709 1.21070 0.97940 0.98774 0.95317 1.22178 0.99948 0.94182 0.97859 1.23986 1.00017 0.87004 1.01251 0.92950 0.91881 0.93028 0.92214 0.90673 0.91962 0.91526 0.91734 0.86251 0.86375 0.86446 0.86236 0.85968 0.90584 0.92027 0.91953 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.26 55.43 0.74 -24.94 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.10 8.82 -34.44 -0.30 -14.40 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 1.01 3.77 -91.24 -0.34 0.67 16 10 C 0.00 -0.06 6.83 -7.54 -0.05 -0.11 16 11 N -0.48 -9.58 6.11 -234.59 -1.43 -11.01 16 12 C 0.05 0.78 2.14 -66.05 -0.14 0.64 16 13 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 14 C -0.11 -1.61 6.08 -24.74 -0.15 -1.76 16 15 C -0.11 -1.35 6.26 -25.07 -0.16 -1.51 16 16 C -0.05 -0.66 3.13 -90.65 -0.28 -0.94 16 17 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 18 C -0.07 -0.79 4.69 -104.63 -0.49 -1.28 16 19 C -0.12 -1.33 9.68 -39.58 -0.38 -1.72 16 20 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 21 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.11 -1.38 8.12 -39.58 -0.32 -1.70 16 24 C -0.10 -1.55 5.75 -25.61 -0.15 -1.70 16 25 C 0.01 0.15 7.07 -7.55 -0.05 0.09 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 28 H 0.05 1.08 7.79 -51.93 -0.40 0.67 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.78 6.88 -51.93 -0.36 0.42 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.12 1.12 7.96 -52.49 -0.42 0.70 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.50 7.75 -52.49 -0.41 1.09 16 39 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 40 H 0.06 0.95 7.30 -51.93 -0.38 0.58 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.05 1.19 7.64 -51.93 -0.40 0.79 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -28.52 336.21 -11.71 -40.23 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.94 Total: 1.58 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -4.12 Total: -27.02 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.70 Total: -35.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.52 -11.71 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172556544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.421 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds