Wall clock time and date at job start Mon Mar 30 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00312 * 2 1 4 4 H 1.48495 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47157 * 300.00038 * 3 2 1 6 6 H 1.48499 * 109.47020 * 59.99794 * 3 2 1 7 7 C 1.37882 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00143 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99560 * 0.02562 * 7 2 1 10 10 C 1.53519 * 114.16674 * 180.02562 * 9 7 2 11 11 N 1.47481 * 87.93135 * 139.66940 * 10 9 7 12 12 C 1.46900 * 111.00215 * 221.29505 * 11 10 9 13 13 H 1.09003 * 110.53455 * 52.38636 * 12 11 10 14 14 C 1.54893 * 110.48634 * 289.78101 * 12 11 10 15 15 C 1.54891 * 102.74671 * 203.37866 * 14 12 11 16 16 C 1.54265 * 104.19759 * 37.93867 * 15 14 12 17 17 H 1.08997 * 110.07328 * 95.69542 * 16 15 14 18 18 C 1.50693 * 110.03255 * 217.10466 * 16 15 14 19 19 C 1.38233 * 120.00207 * 237.16262 * 18 16 15 20 20 C 1.38234 * 120.00037 * 179.72405 * 19 18 16 21 21 C 1.38234 * 120.00240 * 0.26327 * 20 19 18 22 22 C 1.38238 * 119.99693 * 0.02562 * 21 20 19 23 23 C 1.38234 * 120.00047 * 359.95697 * 22 21 20 24 24 C 1.53880 * 106.59890 * 336.39129 * 16 15 14 25 25 C 1.47478 * 87.83631 * 332.99122 * 11 10 9 26 26 H 0.96996 * 119.99841 * 359.97438 * 1 2 3 27 27 H 1.08997 * 113.38692 * 46.92543 * 9 7 2 28 28 H 1.09000 * 113.47619 * 24.90496 * 10 9 7 29 29 H 1.08993 * 113.47422 * 254.43906 * 10 9 7 30 30 H 1.09002 * 110.75014 * 321.69052 * 14 12 11 31 31 H 1.08992 * 110.75863 * 85.06051 * 14 12 11 32 32 H 1.09004 * 110.48268 * 279.25844 * 15 14 12 33 33 H 1.09001 * 110.48787 * 156.61903 * 15 14 12 34 34 H 1.08002 * 120.00157 * 0.02562 * 19 18 16 35 35 H 1.07999 * 120.00009 * 180.28389 * 20 19 18 36 36 H 1.07997 * 120.00475 * 179.97438 * 21 20 19 37 37 H 1.08001 * 119.99658 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.99990 * 180.02562 * 23 22 21 39 39 H 1.09003 * 110.03127 * 119.28279 * 24 16 15 40 40 H 1.08993 * 110.02975 * 240.71406 * 24 16 15 41 41 H 1.08996 * 113.47796 * 141.77728 * 25 11 10 42 42 H 1.09006 * 113.47275 * 272.24194 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.1495 -3.7439 0.0018 11 7 1.2067 -4.3580 0.9552 12 6 1.9242 -5.0854 2.0106 13 1 2.6726 -4.4441 2.4761 14 6 2.5866 -6.3618 1.4350 15 6 2.7376 -7.2624 2.6861 16 6 1.4522 -7.0008 3.4980 17 1 0.7067 -7.7638 3.2743 18 6 1.7639 -7.0008 4.9723 19 6 1.1046 -7.8729 5.8182 20 6 1.3946 -7.8768 7.1698 21 6 2.3400 -7.0047 7.6764 22 6 2.9950 -6.1284 6.8314 23 6 2.7053 -6.1248 5.4798 24 6 0.9350 -5.6166 3.0684 25 6 0.8543 -2.9960 1.3978 26 1 -0.4850 0.8400 0.0004 27 1 0.4432 -2.5323 -0.7305 28 1 3.1386 -3.5649 0.4235 29 1 2.1870 -4.2533 -0.9610 30 1 1.9390 -6.8331 0.6957 31 1 3.5613 -6.1310 1.0053 32 1 3.6174 -6.9726 3.2608 33 1 2.7988 -8.3113 2.3960 34 1 0.3664 -8.5547 5.4224 35 1 0.8828 -8.5613 7.8299 36 1 2.5663 -7.0074 8.7324 37 1 3.7334 -5.4468 7.2272 38 1 3.2173 -5.4405 4.8195 39 1 -0.0611 -5.7081 2.6355 40 1 0.9095 -4.9449 3.9264 41 1 -0.2059 -2.8717 1.6181 42 1 1.4978 -2.6175 2.1921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172556544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:35 Heat of formation + Delta-G solvation = 28.405595 kcal Electronic energy + Delta-G solvation = -20365.294111 eV Core-core repulsion = 17502.508153 eV Total energy + Delta-G solvation = -2862.785958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26587 -40.19124 -37.86152 -34.68442 -32.69578 -31.74127 -30.53355 -29.16442 -27.76123 -26.40970 -25.13438 -23.58824 -22.94569 -21.24736 -20.56918 -20.36131 -18.60193 -17.86283 -17.06791 -16.58289 -16.32047 -16.14482 -15.66099 -15.35365 -14.83505 -14.50435 -14.24240 -14.19459 -14.07470 -13.81059 -13.30179 -13.19149 -12.91606 -12.87475 -12.59748 -12.32191 -12.19655 -12.07372 -11.97564 -11.67916 -11.50398 -11.41636 -11.33747 -11.06157 -10.80637 -10.50816 -9.78636 -9.68057 -9.52866 -8.16488 -6.27931 0.48172 0.52907 1.40316 1.41907 1.53747 2.41228 2.88468 3.12517 3.30412 3.57996 3.70427 3.75499 4.09562 4.17939 4.24393 4.32123 4.36080 4.37356 4.51103 4.51872 4.58071 4.58865 4.66679 4.67895 4.73872 4.85887 4.90689 4.94776 5.04976 5.07745 5.17224 5.20040 5.21167 5.22388 5.30407 5.40937 5.56138 5.61531 5.62787 5.65409 5.80089 5.84513 6.16076 6.29452 6.46064 6.81648 7.40636 8.93554 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.003887 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.886232 B = 7201.857364 C = 7762.684462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.021 3.979 10 C 0.014 3.986 11 N -0.472 5.472 12 C 0.042 3.958 13 H 0.035 0.965 14 C -0.108 4.108 15 C -0.104 4.104 16 C -0.045 4.045 17 H 0.091 0.909 18 C -0.080 4.080 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.098 4.098 25 C 0.018 3.982 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -16.752 12.603 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.002 3.998 10 C -0.115 4.115 11 N -0.194 5.194 12 C -0.067 4.067 13 H 0.053 0.947 14 C -0.146 4.146 15 C -0.142 4.142 16 C -0.064 4.064 17 H 0.109 0.891 18 C -0.080 4.080 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.136 4.136 25 C -0.111 4.111 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.150 0.850 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.629 -17.142 12.398 21.656 hybrid contribution 0.697 1.851 0.257 1.995 sum 5.326 -15.290 12.655 20.550 Atomic orbital electron populations 1.70104 1.07546 1.27531 1.50890 1.25842 0.95622 1.02743 0.94290 0.85506 0.79152 0.79334 0.77686 1.18801 1.20403 1.20640 1.21408 0.92967 0.91528 1.50990 0.92370 1.20066 0.94554 0.92208 0.92993 1.23734 0.95231 0.95578 0.96956 1.68902 1.27443 1.12304 1.10772 1.23126 0.94858 0.95953 0.92813 0.94670 1.22452 1.00019 0.94114 0.97998 1.22399 0.96583 1.00290 0.94929 1.20730 0.98275 0.96816 0.90537 0.89082 1.20003 0.96399 0.96206 0.95376 1.21343 1.00151 0.99277 0.93926 1.21456 0.97989 0.99324 0.95431 1.21446 0.96945 0.96105 1.00678 1.21398 1.00421 0.99527 0.93440 1.21129 0.98599 0.99166 0.95987 1.22101 0.98917 0.95848 0.96748 1.23693 0.98649 0.88978 0.99786 0.92838 0.95143 0.92528 0.90853 0.90808 0.91509 0.91311 0.89571 0.84689 0.83901 0.84130 0.84990 0.86934 0.91830 0.93159 0.93799 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.76 13.26 21.45 0.28 -54.48 16 2 C 0.01 0.80 5.46 84.66 0.46 1.27 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -29.54 8.82 25.60 0.23 -29.31 16 8 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.02 1.08 3.77 -11.19 -0.04 1.04 16 10 C 0.01 0.58 6.83 83.58 0.57 1.15 16 11 N -0.47 -19.14 6.11 -896.11 -5.48 -24.62 16 12 C 0.04 1.38 2.14 45.99 0.10 1.48 16 13 H 0.04 1.25 7.66 -2.39 -0.02 1.23 16 14 C -0.11 -2.87 6.08 31.89 0.19 -2.68 16 15 C -0.10 -2.26 6.26 31.67 0.20 -2.06 16 16 C -0.04 -1.04 3.13 -10.82 -0.03 -1.07 16 17 H 0.09 1.89 7.91 -2.39 -0.02 1.87 16 18 C -0.08 -1.82 4.69 -19.87 -0.09 -1.91 16 19 C -0.13 -2.55 9.68 22.27 0.22 -2.34 16 20 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 21 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 22 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 23 C -0.13 -3.08 8.12 22.27 0.18 -2.90 16 24 C -0.10 -2.93 5.75 31.32 0.18 -2.75 16 25 C 0.02 0.88 7.07 83.57 0.59 1.47 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.03 1.76 8.11 -2.39 -0.02 1.74 16 28 H 0.06 2.34 7.79 -2.39 -0.02 2.32 16 29 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.48 6.88 -2.39 -0.02 1.47 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.14 2.16 7.96 -2.91 -0.02 2.13 16 35 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.11 2.77 7.75 -2.91 -0.02 2.75 16 39 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 40 H 0.05 1.59 7.30 -2.39 -0.02 1.57 16 41 H 0.04 2.21 8.14 -2.39 -0.02 2.20 16 42 H 0.04 2.12 7.64 -2.38 -0.02 2.10 16 Total: -1.00 -61.92 336.21 1.22 -60.70 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.97 Total: 17.91 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 3.42 Total: -45.18 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -5.19 Total: -79.09 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -61.92 1.22 -60.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172556544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.103 kcal (2) G-P(sol) polarization free energy of solvation -61.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds