Wall clock time and date at job start Mon Mar 30 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38272 * 120.11256 * 2 1 4 4 C 1.37938 * 119.77275 * 179.88421 * 3 2 1 5 5 C 1.38915 * 120.54166 * 359.97103 * 4 3 2 6 6 C 1.37659 * 119.68264 * 0.25102 * 5 4 3 7 7 C 1.37927 * 120.11822 * 179.97438 * 2 1 3 8 8 C 1.50628 * 122.56205 * 179.53395 * 6 5 4 9 9 C 1.52736 * 110.57605 * 17.91369 * 8 6 5 10 10 H 1.09004 * 109.68111 * 68.59885 * 9 8 6 11 11 N 1.46905 * 109.68281 * 189.11206 * 9 8 6 12 12 C 1.47479 * 110.99926 * 199.02752 * 11 9 8 13 13 C 1.53511 * 87.92940 * 138.70529 * 12 11 9 14 14 C 1.50706 * 114.34612 * 220.31802 * 13 12 11 15 15 H 1.07991 * 120.00065 * 93.92101 * 14 13 12 16 16 C 1.37879 * 119.99754 * 273.92612 * 14 13 12 17 17 N 1.31513 * 120.00252 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99881 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47100 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47066 * 119.99881 * 18 16 14 21 21 H 1.48502 * 109.47347 * 239.99742 * 18 16 14 22 22 C 1.47473 * 111.00234 * 295.00188 * 11 9 8 23 23 C 1.53322 * 108.38174 * 308.83459 * 9 8 6 24 24 C 1.50631 * 117.74959 * 180.61790 * 5 4 3 25 25 H 1.08998 * 109.46814 * 270.03809 * 1 2 3 26 26 H 1.08998 * 109.47559 * 30.03636 * 1 2 3 27 27 H 1.08996 * 109.46889 * 150.03976 * 1 2 3 28 28 H 1.07996 * 120.11052 * 359.84678 * 3 2 1 29 29 H 1.08000 * 119.72438 * 180.25069 * 4 3 2 30 30 H 1.08001 * 119.72712 * 0.02562 * 7 2 1 31 31 H 1.08998 * 109.25724 * 138.20078 * 8 6 5 32 32 H 1.09003 * 109.25485 * 257.63676 * 8 6 5 33 33 H 1.09000 * 113.47742 * 253.47285 * 12 11 9 34 34 H 1.08999 * 113.47702 * 23.94455 * 12 11 9 35 35 H 1.08995 * 114.17257 * 87.62601 * 13 12 11 36 36 H 0.96994 * 120.00487 * 179.97438 * 17 16 14 37 37 H 1.09005 * 113.47824 * 336.06337 * 22 11 9 38 38 H 1.09001 * 113.47767 * 106.52465 * 22 11 9 39 39 H 1.09001 * 109.67618 * 189.57244 * 23 9 8 40 40 H 1.08991 * 109.68019 * 310.08323 * 23 9 8 41 41 H 1.09003 * 109.25534 * 317.72233 * 24 5 4 42 42 H 1.08998 * 109.24731 * 77.14639 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1961 0.0000 4 6 3.5800 1.1879 0.0024 5 6 4.2788 -0.0127 0.0055 6 6 3.5882 -1.2034 0.0008 7 6 2.1991 -1.1931 0.0005 8 6 4.2796 -2.5416 -0.0066 9 6 5.7354 -2.3961 0.4317 10 1 5.7760 -2.1316 1.4884 11 7 6.4475 -3.6619 0.2110 12 6 7.6846 -3.7190 1.0119 13 6 7.3517 -5.1856 1.3195 14 6 7.6332 -5.6018 2.7404 15 1 6.8476 -5.5622 3.4803 16 6 8.8937 -6.0329 3.0956 17 7 9.8503 -6.0814 2.1944 18 14 9.2428 -6.5480 4.8568 19 1 8.0082 -6.4026 5.6691 20 1 9.6855 -7.9653 4.8795 21 1 10.3122 -5.6864 5.4220 22 6 5.9068 -4.7297 1.0726 23 6 6.3835 -1.2864 -0.4045 24 6 5.7837 0.0518 0.0224 25 1 -0.3633 0.0007 1.0277 26 1 -0.3634 0.8896 -0.5144 27 1 -0.3633 -0.8903 -0.5132 28 1 1.6644 2.1335 -0.0025 29 1 4.1211 2.1226 0.0065 30 1 1.6565 -2.1269 0.0005 31 1 3.7641 -3.2164 0.6768 32 1 4.2473 -2.9573 -1.0137 33 1 8.5913 -3.5944 0.4199 34 1 7.6627 -3.0752 1.8912 35 1 7.7287 -5.8932 0.5812 36 1 10.7372 -6.3844 2.4443 37 1 5.4105 -4.3556 1.9681 38 1 5.3068 -5.4617 0.5321 39 1 7.4598 -1.2779 -0.2320 40 1 6.1826 -1.4587 -1.4618 41 1 6.1179 0.8305 -0.6632 42 1 6.1217 0.2919 1.0304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172827813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:00 Heat of formation + Delta-G solvation = 21.475790 kcal Electronic energy + Delta-G solvation = -20414.810527 eV Core-core repulsion = 17551.724070 eV Total energy + Delta-G solvation = -2863.086457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49393 -40.26151 -36.98817 -34.69344 -33.61534 -32.49223 -30.75084 -28.64696 -27.70252 -26.41570 -25.82262 -23.60519 -23.03251 -22.34898 -20.50896 -20.08216 -18.59137 -17.16066 -16.85857 -16.41988 -16.33236 -16.00187 -15.47382 -15.20125 -15.07820 -14.63626 -14.37733 -14.13255 -13.80682 -13.62074 -13.51348 -13.24951 -13.15818 -12.93497 -12.82982 -12.75335 -12.31952 -12.24287 -12.13144 -11.96828 -11.81600 -11.43048 -11.23598 -11.02026 -10.77799 -10.50433 -9.70261 -9.60657 -9.26014 -8.16294 -6.27706 0.44999 0.48346 1.40599 1.42365 1.54098 2.41466 2.80696 3.12439 3.19823 3.60454 3.80631 4.01404 4.04437 4.08593 4.10546 4.19962 4.28345 4.39953 4.47602 4.53840 4.57522 4.60977 4.66968 4.69853 4.85351 4.85600 4.89937 4.92328 4.96458 5.03408 5.05470 5.08627 5.21102 5.22250 5.30435 5.37609 5.51507 5.59381 5.61838 5.72027 5.79335 5.84665 6.16753 6.29324 6.40778 6.81684 7.40848 8.93701 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.003761 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.659795 B = 7442.769738 C = 7730.253364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.121 4.121 5 C -0.097 4.097 6 C -0.082 4.082 7 C -0.134 4.134 8 C -0.064 4.064 9 C 0.053 3.947 10 H 0.032 0.968 11 N -0.475 5.475 12 C 0.020 3.980 13 C 0.022 3.978 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.015 3.985 17 N -0.921 5.921 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.011 3.989 23 C -0.101 4.101 24 C -0.073 4.073 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.577 15.147 -4.629 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.082 4.082 7 C -0.152 4.152 8 C -0.101 4.101 9 C -0.056 4.056 10 H 0.050 0.950 11 N -0.197 5.197 12 C -0.109 4.109 13 C 0.003 3.997 14 C -0.569 4.569 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.560 5.560 18 Si 0.783 3.217 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.205 1.205 22 C -0.117 4.117 23 C -0.139 4.139 24 C -0.111 4.111 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.403 15.055 -5.399 22.205 hybrid contribution 0.671 -0.431 1.679 1.859 sum -14.732 14.624 -3.720 21.088 Atomic orbital electron populations 1.20805 0.89358 1.03586 1.02940 1.20164 0.97460 0.92850 0.99281 1.21259 0.94090 0.98345 1.01001 1.21388 0.94764 0.97580 1.00176 1.19808 0.95934 0.92886 1.01058 1.19666 0.93995 0.94218 1.00354 1.21201 0.93143 0.98699 1.02203 1.20344 0.93358 0.94257 1.02171 1.22166 0.94440 0.91631 0.97414 0.94983 1.68871 1.04399 1.04395 1.42016 1.23712 0.92883 1.00252 0.94075 1.20048 0.91708 0.92292 0.95681 1.21393 0.96147 1.44209 0.95175 0.92474 1.25827 0.96174 0.95052 1.01370 1.70094 1.02805 1.47711 1.35356 0.85512 0.78282 0.77920 0.79993 1.18931 1.20433 1.20529 1.23754 0.98494 0.94717 0.94761 1.21416 0.99400 0.93339 0.99757 1.20451 0.90656 0.97527 1.02422 0.90589 0.90199 0.91188 0.83809 0.84223 0.85636 0.91317 0.90294 0.93327 0.93572 0.95041 0.92800 0.92635 0.90859 0.92238 0.91390 0.88708 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.02 71.24 0.71 -0.81 16 2 C -0.10 -1.96 5.87 -19.93 -0.12 -2.08 16 3 C -0.13 -2.44 9.71 22.21 0.22 -2.23 16 4 C -0.12 -2.52 9.61 22.36 0.21 -2.30 16 5 C -0.10 -2.43 5.74 -19.86 -0.11 -2.55 16 6 C -0.08 -2.21 5.74 -19.86 -0.11 -2.33 16 7 C -0.13 -3.20 9.27 22.36 0.21 -2.99 16 8 C -0.06 -1.92 4.80 29.74 0.14 -1.77 16 9 C 0.05 1.79 1.55 44.93 0.07 1.86 16 10 H 0.03 1.19 7.53 -2.38 -0.02 1.17 16 11 N -0.47 -19.33 6.14 -902.37 -5.54 -24.87 16 12 C 0.02 0.95 6.80 83.57 0.57 1.52 16 13 C 0.02 1.13 3.76 -11.20 -0.04 1.09 16 14 C -0.53 -29.50 8.83 25.60 0.23 -29.28 16 15 H 0.06 3.10 7.81 -2.92 -0.02 3.08 16 16 C 0.02 0.85 5.46 84.66 0.46 1.31 16 17 N -0.92 -54.34 13.26 21.45 0.28 -54.05 16 18 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.01 0.49 6.30 83.57 0.53 1.02 16 23 C -0.10 -3.00 5.50 30.61 0.17 -2.84 16 24 C -0.07 -1.77 5.67 29.74 0.17 -1.60 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 27 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.14 2.22 8.05 -2.91 -0.02 2.19 16 30 H 0.13 2.69 8.05 -2.91 -0.02 2.67 16 31 H 0.07 2.06 7.62 -2.39 -0.02 2.04 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.05 2.20 7.58 -2.39 -0.02 2.19 16 35 H 0.03 1.81 8.11 -2.39 -0.02 1.79 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.06 2.33 7.81 -2.38 -0.02 2.31 16 38 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.06 1.87 7.76 -2.39 -0.02 1.85 16 40 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.09 1.86 8.13 -2.39 -0.02 1.84 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.79 334.68 1.04 -60.76 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.97 Total: 16.59 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 3.30 Total: -43.98 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -5.26 Total: -78.92 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -61.79 1.04 -60.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172827813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.233 kcal (2) G-P(sol) polarization free energy of solvation -61.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds