Wall clock time and date at job start Mon Mar 30 2020 01:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00318 * 2 1 4 4 H 1.48497 * 109.47327 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47179 * 120.00226 * 3 2 1 6 6 H 1.48504 * 109.46848 * 239.99873 * 3 2 1 7 7 C 1.37884 * 119.99665 * 179.72258 * 2 1 3 8 8 H 1.07995 * 120.00138 * 335.41883 * 7 2 1 9 9 C 1.50698 * 119.99773 * 155.41868 * 7 2 1 10 10 C 1.52999 * 109.47536 * 294.65664 * 9 7 2 11 11 C 1.52998 * 109.47393 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46984 * 60.00055 * 11 10 9 13 13 N 1.46896 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.46905 * 111.00118 * 274.07577 * 13 12 11 15 15 H 1.09001 * 109.54040 * 35.45106 * 14 13 12 16 16 C 1.53180 * 109.54078 * 275.27466 * 14 13 12 17 17 C 1.53094 * 109.15945 * 183.14844 * 16 14 13 18 18 O 1.42902 * 109.41369 * 57.61758 * 17 16 14 19 19 C 1.42906 * 114.09439 * 298.83458 * 18 17 16 20 20 C 1.53089 * 109.41504 * 61.16074 * 19 18 17 21 21 H 1.08998 * 109.52146 * 62.29530 * 20 19 18 22 22 F 1.39894 * 109.52610 * 182.48543 * 20 19 18 23 23 C 1.52998 * 109.47310 * 299.99944 * 12 11 10 24 24 C 1.52998 * 109.47052 * 60.00097 * 23 12 11 25 25 H 0.97000 * 120.00093 * 174.91006 * 1 2 3 26 26 H 1.08997 * 109.47423 * 54.66079 * 9 7 2 27 27 H 1.08997 * 109.47104 * 300.00611 * 10 9 7 28 28 H 1.09007 * 109.46769 * 59.99907 * 10 9 7 29 29 H 1.08997 * 109.46895 * 300.00093 * 11 10 9 30 30 H 1.09000 * 109.46924 * 180.02562 * 11 10 9 31 31 H 1.09006 * 109.47144 * 60.00501 * 12 11 10 32 32 H 1.00904 * 111.00248 * 150.12204 * 13 12 11 33 33 H 1.08997 * 109.52803 * 303.05661 * 16 14 13 34 34 H 1.09003 * 109.51784 * 63.24922 * 16 14 13 35 35 H 1.09007 * 109.47618 * 177.59462 * 17 16 14 36 36 H 1.08997 * 109.48801 * 297.61585 * 17 16 14 37 37 H 1.09002 * 109.48202 * 181.14422 * 19 18 17 38 38 H 1.09004 * 109.48034 * 301.17794 * 19 18 17 39 39 H 1.08997 * 109.47218 * 300.00359 * 23 12 11 40 40 H 1.09000 * 109.47262 * 179.97438 * 23 12 11 41 41 H 1.09001 * 109.47403 * 180.02562 * 24 23 12 42 42 H 1.09006 * 109.47257 * 59.99621 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 1.5379 -2.0851 0.3991 9 6 3.4090 -1.2559 -0.5368 10 6 3.3886 -0.9677 -2.0393 11 6 4.8145 -1.0311 -2.5903 12 6 5.3939 -2.4260 -2.3464 13 7 6.7632 -2.4866 -2.8749 14 6 6.7615 -2.8288 -4.3035 15 1 5.8973 -2.3727 -4.7866 16 6 6.6955 -4.3505 -4.4658 17 6 6.7735 -4.7009 -5.9541 18 8 7.9778 -4.1649 -6.5058 19 6 8.0734 -2.7413 -6.4250 20 6 8.0475 -2.3121 -4.9558 21 1 8.9114 -2.7301 -4.4390 22 9 8.0839 -0.9159 -4.8758 23 6 5.4145 -2.7142 -0.8440 24 6 3.9885 -2.6509 -0.2930 25 1 -0.4850 -0.8367 -0.0745 26 1 4.0264 -0.5125 -0.0327 27 1 2.7712 -1.7112 -2.5435 28 1 2.9753 0.0259 -2.2130 29 1 5.4321 -0.2879 -2.0861 30 1 4.7999 -0.8253 -3.6606 31 1 4.7762 -3.1693 -2.8506 32 1 7.3257 -3.1377 -2.3478 33 1 7.5321 -4.8097 -3.9392 34 1 5.7568 -4.7204 -4.0532 35 1 6.7700 -5.7845 -6.0730 36 1 5.9147 -4.2756 -6.4733 37 1 9.0063 -2.4130 -6.8833 38 1 7.2316 -2.2901 -6.9504 39 1 6.0321 -1.9710 -0.3398 40 1 5.8268 -3.7082 -0.6703 41 1 4.0032 -2.8558 0.7775 42 1 3.3708 -3.3941 -0.7972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:42 Heat of formation + Delta-G solvation = -121.963704 kcal Electronic energy + Delta-G solvation = -21979.338824 eV Core-core repulsion = 18679.263139 eV Total energy + Delta-G solvation = -3300.075685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.62575 -39.70720 -38.23884 -35.53682 -32.83116 -31.25653 -30.87798 -30.07337 -28.27266 -24.73327 -23.68863 -23.14392 -22.14799 -20.70322 -20.29363 -18.84682 -17.43950 -16.97343 -16.80921 -16.00221 -15.89220 -15.46054 -14.80172 -14.38916 -14.23502 -13.74800 -13.58562 -13.33845 -13.19836 -12.91873 -12.75677 -12.47583 -11.99534 -11.76520 -11.64268 -11.50533 -11.22829 -11.13530 -10.74540 -10.52867 -10.49873 -10.36784 -10.16265 -9.94748 -9.69376 -9.46951 -9.26121 -8.77436 -8.36360 -8.09795 -6.40818 -3.99157 3.39671 3.46280 3.49705 3.67467 3.84589 4.22653 4.27152 4.43792 4.56646 4.66125 4.79932 4.89369 5.11129 5.14876 5.20402 5.26246 5.30429 5.31818 5.37828 5.48195 5.62604 5.72000 5.83525 5.94949 6.10087 6.16236 6.22946 6.31445 6.38732 6.58445 6.69973 6.72324 6.80809 6.96843 7.07605 7.20912 7.34599 7.46631 7.63424 8.26612 8.43129 8.96175 9.65596 10.94921 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.029605 B = 0.004450 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.554044 B = 6290.623533 C = 6621.564052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.038 3.962 3 Si 1.035 2.965 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.607 4.607 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.115 4.115 11 C -0.105 4.105 12 C 0.094 3.906 13 N -0.677 5.677 14 C 0.060 3.940 15 H 0.091 0.909 16 C -0.184 4.184 17 C 0.059 3.941 18 O -0.373 6.373 19 C 0.037 3.963 20 C 0.074 3.926 21 H 0.088 0.912 22 F -0.197 7.197 23 C -0.119 4.119 24 C -0.096 4.096 25 H 0.268 0.732 26 H 0.019 0.981 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.338 0.662 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.234 -8.396 -11.500 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.168 4.168 3 Si 0.864 3.136 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.644 4.644 8 H 0.072 0.928 9 C 0.005 3.995 10 C -0.153 4.153 11 C -0.144 4.144 12 C -0.014 4.014 13 N -0.306 5.306 14 C -0.052 4.052 15 H 0.110 0.890 16 C -0.224 4.224 17 C -0.018 4.018 18 O -0.292 6.292 19 C -0.041 4.041 20 C 0.037 3.963 21 H 0.106 0.894 22 F -0.178 7.178 23 C -0.157 4.157 24 C -0.134 4.134 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.196 -6.147 -11.596 20.846 hybrid contribution -0.307 -2.432 0.156 2.456 sum 15.888 -8.579 -11.440 21.376 Atomic orbital electron populations 1.70852 1.07491 1.30387 1.44763 1.25705 0.95832 1.02365 0.92903 0.84150 0.75664 0.76399 0.77420 1.21359 1.21062 1.20200 1.21943 0.98986 0.97593 1.45921 0.92841 1.18937 0.96715 0.92239 0.91622 1.21963 0.93073 1.01172 0.99134 1.21615 0.97812 0.95447 0.99493 1.21568 0.86947 0.97900 0.95031 1.60580 1.13873 1.55235 1.00940 1.22247 0.98001 0.93427 0.91498 0.89048 1.22974 1.03863 0.97278 0.98243 1.22639 0.87248 0.99630 0.92291 1.87969 1.40641 1.19717 1.80851 1.23190 1.03882 0.82129 0.94861 1.22166 0.99858 0.77062 0.97242 0.89444 1.92838 1.97742 1.29914 1.97282 1.21781 0.99566 0.99982 0.94411 1.21425 0.92723 0.99857 0.99390 0.92252 0.96287 0.93413 0.92493 0.91981 0.93771 0.94084 0.84284 0.90472 0.89890 0.88291 0.92570 0.87591 0.91818 0.91562 0.93570 0.92872 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.70 55.43 0.76 -27.00 16 2 C 0.04 1.09 5.23 -17.82 -0.09 1.00 16 3 Si 1.04 25.55 26.55 -169.99 -4.51 21.04 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.38 6.07 56.52 0.34 -6.04 16 7 C -0.61 -17.04 8.76 -34.44 -0.30 -17.35 16 8 H 0.05 1.61 7.99 -52.49 -0.42 1.19 16 9 C 0.02 0.56 1.70 -91.77 -0.16 0.40 16 10 C -0.11 -2.50 4.94 -26.73 -0.13 -2.63 16 11 C -0.11 -1.92 5.42 -26.73 -0.14 -2.06 16 12 C 0.09 1.45 2.30 -67.72 -0.16 1.29 16 13 N -0.68 -8.78 6.03 -99.54 -0.60 -9.39 16 14 C 0.06 0.67 2.11 -67.52 -0.14 0.53 16 15 H 0.09 1.15 7.19 -51.93 -0.37 0.78 16 16 C -0.18 -1.67 5.38 -26.59 -0.14 -1.81 16 17 C 0.06 0.49 6.84 37.21 0.25 0.75 16 18 O -0.37 -3.67 10.77 -35.23 -0.38 -4.05 16 19 C 0.04 0.34 6.58 37.20 0.24 0.59 16 20 C 0.07 0.79 3.70 -26.59 -0.10 0.70 16 21 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 22 F -0.20 -2.70 17.06 2.25 0.04 -2.66 16 23 C -0.12 -1.91 5.18 -26.73 -0.14 -2.05 16 24 C -0.10 -1.90 5.14 -26.73 -0.14 -2.04 16 25 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 26 H 0.02 0.46 6.72 -51.93 -0.35 0.11 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.33 5.53 -51.93 -0.29 1.04 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.76 7.49 -51.93 -0.39 0.37 16 31 H 0.04 0.63 7.13 -51.93 -0.37 0.26 16 32 H 0.34 3.86 8.05 -39.29 -0.32 3.54 16 33 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.08 0.77 7.47 -51.93 -0.39 0.38 16 35 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -30.41 321.61 -8.17 -38.58 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.17 Total: 1.32 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -1.14 Total: -22.68 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.16 Total: -36.39 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.38 Total: -4.05 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -4.51 Total: 21.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.41 -8.17 -38.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.384 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds