Wall clock time and date at job start Mon Mar 30 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00318 * 2 1 4 4 H 1.48497 * 109.47327 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47179 * 120.00226 * 3 2 1 6 6 H 1.48504 * 109.46848 * 239.99873 * 3 2 1 7 7 C 1.37884 * 119.99665 * 179.72258 * 2 1 3 8 8 H 1.07995 * 120.00138 * 335.41883 * 7 2 1 9 9 C 1.50698 * 119.99773 * 155.41868 * 7 2 1 10 10 C 1.52999 * 109.47536 * 294.65664 * 9 7 2 11 11 C 1.52998 * 109.47393 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46984 * 60.00055 * 11 10 9 13 13 N 1.46896 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.46905 * 111.00118 * 274.07577 * 13 12 11 15 15 H 1.09001 * 109.54040 * 35.45106 * 14 13 12 16 16 C 1.53180 * 109.54078 * 275.27466 * 14 13 12 17 17 C 1.53094 * 109.15945 * 183.14844 * 16 14 13 18 18 O 1.42902 * 109.41369 * 57.61758 * 17 16 14 19 19 C 1.42906 * 114.09439 * 298.83458 * 18 17 16 20 20 C 1.53089 * 109.41504 * 61.16074 * 19 18 17 21 21 H 1.08998 * 109.52146 * 62.29530 * 20 19 18 22 22 F 1.39894 * 109.52610 * 182.48543 * 20 19 18 23 23 C 1.52998 * 109.47310 * 299.99944 * 12 11 10 24 24 C 1.52998 * 109.47052 * 60.00097 * 23 12 11 25 25 H 0.97000 * 120.00093 * 174.91006 * 1 2 3 26 26 H 1.08997 * 109.47423 * 54.66079 * 9 7 2 27 27 H 1.08997 * 109.47104 * 300.00611 * 10 9 7 28 28 H 1.09007 * 109.46769 * 59.99907 * 10 9 7 29 29 H 1.08997 * 109.46895 * 300.00093 * 11 10 9 30 30 H 1.09000 * 109.46924 * 180.02562 * 11 10 9 31 31 H 1.09006 * 109.47144 * 60.00501 * 12 11 10 32 32 H 1.00904 * 111.00248 * 150.12204 * 13 12 11 33 33 H 1.08997 * 109.52803 * 303.05661 * 16 14 13 34 34 H 1.09003 * 109.51784 * 63.24922 * 16 14 13 35 35 H 1.09007 * 109.47618 * 177.59462 * 17 16 14 36 36 H 1.08997 * 109.48801 * 297.61585 * 17 16 14 37 37 H 1.09002 * 109.48202 * 181.14422 * 19 18 17 38 38 H 1.09004 * 109.48034 * 301.17794 * 19 18 17 39 39 H 1.08997 * 109.47218 * 300.00359 * 23 12 11 40 40 H 1.09000 * 109.47262 * 179.97438 * 23 12 11 41 41 H 1.09001 * 109.47403 * 180.02562 * 24 23 12 42 42 H 1.09006 * 109.47257 * 59.99621 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1030 1.6962 -1.2125 7 6 2.0045 -1.1941 0.0058 8 1 1.5379 -2.0851 0.3991 9 6 3.4090 -1.2559 -0.5368 10 6 3.3886 -0.9677 -2.0393 11 6 4.8145 -1.0311 -2.5903 12 6 5.3939 -2.4260 -2.3464 13 7 6.7632 -2.4866 -2.8749 14 6 6.7615 -2.8288 -4.3035 15 1 5.8973 -2.3727 -4.7866 16 6 6.6955 -4.3505 -4.4658 17 6 6.7735 -4.7009 -5.9541 18 8 7.9778 -4.1649 -6.5058 19 6 8.0734 -2.7413 -6.4250 20 6 8.0475 -2.3121 -4.9558 21 1 8.9114 -2.7301 -4.4390 22 9 8.0839 -0.9159 -4.8758 23 6 5.4145 -2.7142 -0.8440 24 6 3.9885 -2.6509 -0.2930 25 1 -0.4850 -0.8367 -0.0745 26 1 4.0264 -0.5125 -0.0327 27 1 2.7712 -1.7112 -2.5435 28 1 2.9753 0.0259 -2.2130 29 1 5.4321 -0.2879 -2.0861 30 1 4.7999 -0.8253 -3.6606 31 1 4.7762 -3.1693 -2.8506 32 1 7.3257 -3.1377 -2.3478 33 1 7.5321 -4.8097 -3.9392 34 1 5.7568 -4.7204 -4.0532 35 1 6.7700 -5.7845 -6.0730 36 1 5.9147 -4.2756 -6.4733 37 1 9.0063 -2.4130 -6.8833 38 1 7.2316 -2.2901 -6.9504 39 1 6.0321 -1.9710 -0.3398 40 1 5.8268 -3.7082 -0.6703 41 1 4.0032 -2.8558 0.7775 42 1 3.3708 -3.3941 -0.7972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:41 Heat of formation + Delta-G solvation = -142.268665 kcal Electronic energy + Delta-G solvation = -21980.219313 eV Core-core repulsion = 18679.263139 eV Total energy + Delta-G solvation = -3300.956174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.56564 -40.58619 -39.51346 -36.77661 -34.71386 -32.58810 -31.66876 -31.57753 -29.68626 -26.11968 -24.61020 -24.34985 -23.60371 -21.86514 -21.55737 -20.46777 -19.61959 -17.80637 -17.57857 -16.92445 -16.84673 -16.30388 -15.97049 -15.68855 -15.40378 -15.30224 -15.12903 -14.77671 -14.53050 -14.31483 -13.83877 -13.56926 -13.28744 -13.07696 -12.94135 -12.79955 -12.43756 -12.34288 -12.13288 -12.07508 -11.90167 -11.82858 -11.63793 -11.31472 -11.23814 -11.02354 -10.71956 -10.58913 -10.33157 -9.39540 -8.71686 -6.30756 1.46751 1.51454 1.71816 2.49757 2.72635 2.89621 3.01721 3.43808 3.49843 3.67786 3.83337 3.91427 3.94510 4.09487 4.19586 4.29027 4.38048 4.44635 4.48559 4.52190 4.61015 4.71467 4.71553 4.72463 4.77743 4.80525 4.85215 4.95668 5.04389 5.11081 5.13790 5.23070 5.36547 5.45795 5.60609 5.79990 5.99666 6.05412 6.05840 6.20975 6.46051 6.63206 7.42046 8.62256 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.029605 B = 0.004450 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.554044 B = 6290.623533 C = 6621.564052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.012 4.012 3 Si 1.075 2.925 4 H -0.290 1.290 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.611 4.611 8 H 0.017 0.983 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.098 4.098 12 C 0.104 3.896 13 N -0.679 5.679 14 C 0.058 3.942 15 H 0.076 0.924 16 C -0.175 4.175 17 C 0.056 3.944 18 O -0.382 6.382 19 C 0.040 3.960 20 C 0.072 3.928 21 H 0.098 0.902 22 F -0.216 7.216 23 C -0.109 4.109 24 C -0.093 4.093 25 H 0.254 0.746 26 H 0.019 0.981 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.351 0.649 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.090 -8.968 -12.468 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.211 4.211 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.649 4.649 8 H 0.035 0.965 9 C 0.000 4.000 10 C -0.148 4.148 11 C -0.136 4.136 12 C -0.005 4.005 13 N -0.310 5.310 14 C -0.053 4.053 15 H 0.094 0.906 16 C -0.215 4.215 17 C -0.020 4.020 18 O -0.301 6.301 19 C -0.037 4.037 20 C 0.035 3.965 21 H 0.116 0.884 22 F -0.196 7.196 23 C -0.147 4.147 24 C -0.131 4.131 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.172 0.828 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 19.077 -6.750 -12.569 23.821 hybrid contribution -1.250 -2.341 0.470 2.695 sum 17.827 -9.091 -12.098 23.384 Atomic orbital electron populations 1.70970 1.08692 1.29568 1.47776 1.27039 0.95807 1.06024 0.92200 0.83650 0.75106 0.72416 0.79183 1.21617 1.19115 1.17614 1.22234 1.01327 0.96112 1.45204 0.96503 1.18957 0.93912 0.94681 0.92431 1.21784 0.95524 0.99606 0.97860 1.21488 0.95104 0.97377 0.99616 1.21310 0.88391 0.95980 0.94818 1.60435 1.12283 1.56275 1.02012 1.22268 0.97786 0.94989 0.90218 0.90565 1.22888 1.04269 0.95389 0.98928 1.22764 0.86895 1.00702 0.91689 1.87968 1.41271 1.19894 1.80939 1.23204 1.04775 0.81960 0.93808 1.22325 0.99848 0.75888 0.98435 0.88382 1.92800 1.97804 1.31605 1.97432 1.21661 0.96546 1.02020 0.94439 1.21318 0.95247 0.97160 0.99363 0.93770 0.96265 0.94452 0.94471 0.92469 0.92943 0.93889 0.82821 0.89428 0.89926 0.86510 0.92430 0.86135 0.91750 0.91436 0.90310 0.93424 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.45 13.70 21.45 0.29 -59.16 16 2 C -0.01 -0.69 5.23 84.66 0.44 -0.24 16 3 Si 1.07 51.46 26.55 68.60 1.82 53.28 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.25 -11.01 6.07 99.48 0.60 -10.40 16 7 C -0.61 -35.21 8.76 25.60 0.22 -34.99 16 8 H 0.02 1.06 7.99 -2.91 -0.02 1.03 16 9 C 0.02 0.89 1.70 -11.54 -0.02 0.87 16 10 C -0.11 -4.69 4.94 30.59 0.15 -4.54 16 11 C -0.10 -3.36 5.42 30.59 0.17 -3.20 16 12 C 0.10 2.93 2.30 44.92 0.10 3.03 16 13 N -0.68 -15.50 6.03 -468.84 -2.83 -18.33 16 14 C 0.06 1.16 2.11 45.04 0.10 1.25 16 15 H 0.08 1.76 7.19 -2.39 -0.02 1.75 16 16 C -0.18 -2.63 5.38 30.69 0.17 -2.46 16 17 C 0.06 0.78 6.84 72.01 0.49 1.27 16 18 O -0.38 -6.43 10.77 -148.98 -1.60 -8.04 16 19 C 0.04 0.64 6.58 72.01 0.47 1.11 16 20 C 0.07 1.36 3.70 30.68 0.11 1.47 16 21 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 22 F -0.22 -5.48 17.06 44.97 0.77 -4.71 16 23 C -0.11 -3.15 5.18 30.59 0.16 -3.00 16 24 C -0.09 -3.58 5.14 30.60 0.16 -3.42 16 25 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 26 H 0.02 0.90 6.72 -2.39 -0.02 0.89 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.71 5.53 -2.38 -0.01 1.70 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.72 7.49 -2.39 -0.02 1.70 16 31 H 0.04 1.21 7.13 -2.38 -0.02 1.20 16 32 H 0.35 6.63 8.05 -89.69 -0.72 5.90 16 33 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 34 H 0.08 1.28 7.47 -2.39 -0.02 1.26 16 35 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.60 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -66.98 321.61 1.30 -65.68 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.13 Total: 14.11 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 2.72 Total: -42.84 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.54 Total: -77.48 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -1.60 Total: -8.04 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.77 Total: -4.71 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 1.82 Total: 53.28 kcal Total: -66.98 1.30 -65.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.590 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds