Wall clock time and date at job start Mon Mar 30 2020 01:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48504 * 109.47148 * 239.99800 * 3 2 1 5 5 H 1.48497 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47217 * 120.00472 * 3 2 1 7 7 C 1.37872 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47465 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47567 * 59.99844 * 11 10 9 13 13 N 1.46901 * 109.47054 * 59.99883 * 12 11 10 14 14 C 1.46897 * 110.99988 * 153.50932 * 13 12 11 15 15 H 1.09008 * 109.54215 * 30.46779 * 14 13 12 16 16 C 1.53179 * 109.54334 * 150.73312 * 14 13 12 17 17 C 1.53090 * 109.16184 * 176.85050 * 16 14 13 18 18 O 1.42908 * 109.41438 * 302.39127 * 17 16 14 19 19 C 1.42903 * 114.09640 * 61.16010 * 18 17 16 20 20 C 1.53094 * 109.41687 * 298.83990 * 19 18 17 21 21 H 1.08997 * 109.52250 * 297.70940 * 20 19 18 22 22 F 1.39901 * 109.52318 * 177.51475 * 20 19 18 23 23 C 1.53001 * 109.46854 * 299.99860 * 12 11 10 24 24 C 1.52998 * 109.46902 * 59.99878 * 9 7 2 25 25 H 0.96999 * 120.00082 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47109 * 300.00203 * 9 7 2 27 27 H 1.08996 * 109.47102 * 59.99494 * 10 9 7 28 28 H 1.09002 * 109.46536 * 299.99838 * 10 9 7 29 29 H 1.09004 * 109.47092 * 299.99809 * 11 10 9 30 30 H 1.08996 * 109.47056 * 179.97438 * 11 10 9 31 31 H 1.08995 * 109.47437 * 180.02562 * 12 11 10 32 32 H 1.00900 * 110.99961 * 29.55565 * 13 12 11 33 33 H 1.08998 * 109.52483 * 296.75241 * 16 14 13 34 34 H 1.09003 * 109.52089 * 56.94605 * 16 14 13 35 35 H 1.09002 * 109.47979 * 182.41200 * 17 16 14 36 36 H 1.08995 * 109.49602 * 62.37689 * 17 16 14 37 37 H 1.09004 * 109.47850 * 178.86005 * 19 18 17 38 38 H 1.08998 * 109.47949 * 58.82754 * 19 18 17 39 39 H 1.08995 * 109.47121 * 179.97438 * 23 12 11 40 40 H 1.08995 * 109.47699 * 300.00253 * 23 12 11 41 41 H 1.09004 * 109.47354 * 300.00138 * 24 9 7 42 42 H 1.09003 * 109.47692 * 60.00440 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 0.6011 -5.0678 -1.2507 13 7 1.4460 -4.9897 -2.4499 14 6 0.8072 -5.6626 -3.5887 15 1 -0.2763 -5.5890 -3.4948 16 6 1.2565 -4.9987 -4.8940 17 6 0.6485 -5.7554 -6.0778 18 8 1.0473 -7.1265 -6.0206 19 6 0.6140 -7.8114 -4.8436 20 6 1.2206 -7.1374 -3.6101 21 1 2.3073 -7.2104 -3.6525 22 9 0.7530 -7.7709 -2.4537 23 6 -0.3932 -3.9049 -1.2506 24 6 0.3710 -2.5799 -1.2494 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8534 -5.0451 0.8886 30 1 2.1887 -5.8155 -0.0016 31 1 0.0558 -6.0116 -1.2509 32 1 2.3627 -5.3718 -2.2719 33 1 0.9178 -3.9628 -4.9112 34 1 2.3440 -5.0286 -4.9623 35 1 0.9993 -5.3135 -7.0105 36 1 -0.4385 -5.6908 -6.0312 37 1 0.9399 -8.8507 -4.8871 38 1 -0.4735 -7.7737 -4.7806 39 1 -1.0193 -3.9622 -2.1410 40 1 -1.0201 -3.9628 -0.3609 41 1 -0.3374 -1.7514 -1.2490 42 1 0.9973 -2.5220 -2.1397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:49 Heat of formation + Delta-G solvation = -116.614521 kcal Electronic energy + Delta-G solvation = -22350.295353 eV Core-core repulsion = 19050.451626 eV Total energy + Delta-G solvation = -3299.843727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.84478 -39.47337 -38.07017 -34.96828 -32.74586 -31.00090 -30.46469 -29.65527 -28.07646 -24.61642 -23.74763 -23.55063 -21.59941 -20.64701 -20.39114 -18.17384 -16.94877 -16.74084 -16.21970 -16.02238 -15.54644 -15.39770 -14.77541 -14.46177 -14.03065 -13.93485 -13.58363 -12.89823 -12.77598 -12.60664 -12.57816 -12.08047 -11.69972 -11.50249 -11.41556 -11.20974 -11.10162 -10.99780 -10.77987 -10.59735 -10.42810 -10.18570 -10.01350 -9.83763 -9.68076 -9.19170 -8.80937 -8.48900 -8.15277 -7.94012 -5.86270 -3.91530 3.37701 3.42045 3.44995 3.52529 4.12912 4.26404 4.36505 4.52692 4.56894 4.74193 5.02005 5.07667 5.27087 5.30410 5.39247 5.43035 5.48814 5.56211 5.63154 5.77834 5.81969 5.96012 6.12817 6.24883 6.40129 6.45585 6.53958 6.59207 6.83250 6.86190 6.91058 7.07828 7.31592 7.39872 7.56781 7.64970 7.75284 7.89817 8.23370 8.33557 8.63030 9.12495 9.71859 11.18911 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.004816 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.939056 B = 5812.234144 C = 6327.893734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.507 4.507 8 H 0.051 0.949 9 C 0.052 3.948 10 C -0.102 4.102 11 C -0.118 4.118 12 C 0.090 3.910 13 N -0.658 5.658 14 C 0.065 3.935 15 H 0.087 0.913 16 C -0.140 4.140 17 C 0.055 3.945 18 O -0.375 6.375 19 C 0.043 3.957 20 C 0.026 3.974 21 H 0.090 0.910 22 F -0.206 7.206 23 C -0.105 4.105 24 C -0.097 4.097 25 H 0.258 0.742 26 H 0.017 0.983 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.337 0.663 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -14.098 -9.683 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.033 3.967 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.019 4.019 13 N -0.288 5.288 14 C -0.046 4.046 15 H 0.105 0.895 16 C -0.179 4.179 17 C -0.022 4.022 18 O -0.293 6.293 19 C -0.035 4.035 20 C -0.013 4.013 21 H 0.108 0.892 22 F -0.187 7.187 23 C -0.143 4.143 24 C -0.135 4.135 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.120 -13.422 -9.942 16.704 hybrid contribution 0.399 0.061 0.606 0.728 sum 0.279 -13.361 -9.336 16.302 Atomic orbital electron populations 1.69885 1.05793 1.26099 1.51361 1.24941 0.94779 0.98782 0.95475 0.86758 0.79648 0.83655 0.78465 1.20418 1.21470 1.20498 1.21203 0.92706 0.90925 1.49690 0.93112 1.18598 0.92583 0.91241 0.94229 1.21545 0.98630 0.93976 0.99837 1.21736 0.98285 0.98744 0.96811 1.21631 0.94287 0.97294 0.88699 1.60560 1.05229 1.58145 1.04854 1.22255 1.00372 0.88554 0.93457 0.89486 1.22202 1.02245 1.01188 0.92241 1.22779 0.98931 0.81164 0.99365 1.87960 1.78015 1.23889 1.39467 1.23060 0.99232 0.96852 0.84354 1.23230 1.00410 0.95021 0.82614 0.89159 1.92806 1.90699 1.83765 1.51404 1.21619 0.96489 0.97178 0.99063 1.21421 0.99193 0.93724 0.99147 0.93254 0.96489 0.94275 0.92656 0.92137 0.94004 0.94428 0.84357 0.88891 0.90580 0.88148 0.92798 0.88100 0.92010 0.94560 0.93209 0.90080 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 11.32 55.43 0.63 -25.20 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.30 2.10 -91.77 -0.19 1.10 16 10 C -0.10 -2.14 4.98 -26.73 -0.13 -2.27 16 11 C -0.12 -2.08 5.29 -26.73 -0.14 -2.22 16 12 C 0.09 1.52 2.45 -67.71 -0.17 1.35 16 13 N -0.66 -10.00 4.62 -99.54 -0.46 -10.46 16 14 C 0.07 0.82 2.25 -67.53 -0.15 0.67 16 15 H 0.09 1.18 7.23 -51.92 -0.38 0.80 16 16 C -0.14 -1.58 5.75 -26.59 -0.15 -1.73 16 17 C 0.05 0.52 6.84 37.20 0.25 0.78 16 18 O -0.37 -4.08 10.77 -35.23 -0.38 -4.46 16 19 C 0.04 0.43 6.58 37.21 0.24 0.67 16 20 C 0.03 0.29 3.43 -26.59 -0.09 0.20 16 21 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 22 F -0.21 -2.76 15.37 2.25 0.03 -2.73 16 23 C -0.11 -2.06 5.53 -26.75 -0.15 -2.21 16 24 C -0.10 -2.28 4.82 -26.75 -0.13 -2.41 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 1.15 7.44 -51.93 -0.39 0.76 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 31 H 0.04 0.62 6.33 -51.93 -0.33 0.29 16 32 H 0.34 4.89 7.74 -39.29 -0.30 4.59 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.66 7.61 -51.93 -0.40 0.27 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 42 H 0.05 1.14 7.60 -51.93 -0.39 0.75 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -29.06 320.51 -8.67 -37.74 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.11 Total: 2.54 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.20 Total: -18.85 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.17 Total: -35.65 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.38 Total: -4.46 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.03 Total: -2.73 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.06 -8.67 -37.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.877 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds