Wall clock time and date at job start Mon Mar 30 2020 01:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48504 * 109.47148 * 239.99800 * 3 2 1 5 5 H 1.48497 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47217 * 120.00472 * 3 2 1 7 7 C 1.37872 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00295 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47465 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47567 * 59.99844 * 11 10 9 13 13 N 1.46901 * 109.47054 * 59.99883 * 12 11 10 14 14 C 1.46897 * 110.99988 * 153.50932 * 13 12 11 15 15 H 1.09008 * 109.54215 * 30.46779 * 14 13 12 16 16 C 1.53179 * 109.54334 * 150.73312 * 14 13 12 17 17 C 1.53090 * 109.16184 * 176.85050 * 16 14 13 18 18 O 1.42908 * 109.41438 * 302.39127 * 17 16 14 19 19 C 1.42903 * 114.09640 * 61.16010 * 18 17 16 20 20 C 1.53094 * 109.41687 * 298.83990 * 19 18 17 21 21 H 1.08997 * 109.52250 * 297.70940 * 20 19 18 22 22 F 1.39901 * 109.52318 * 177.51475 * 20 19 18 23 23 C 1.53001 * 109.46854 * 299.99860 * 12 11 10 24 24 C 1.52998 * 109.46902 * 59.99878 * 9 7 2 25 25 H 0.96999 * 120.00082 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47109 * 300.00203 * 9 7 2 27 27 H 1.08996 * 109.47102 * 59.99494 * 10 9 7 28 28 H 1.09002 * 109.46536 * 299.99838 * 10 9 7 29 29 H 1.09004 * 109.47092 * 299.99809 * 11 10 9 30 30 H 1.08996 * 109.47056 * 179.97438 * 11 10 9 31 31 H 1.08995 * 109.47437 * 180.02562 * 12 11 10 32 32 H 1.00900 * 110.99961 * 29.55565 * 13 12 11 33 33 H 1.08998 * 109.52483 * 296.75241 * 16 14 13 34 34 H 1.09003 * 109.52089 * 56.94605 * 16 14 13 35 35 H 1.09002 * 109.47979 * 182.41200 * 17 16 14 36 36 H 1.08995 * 109.49602 * 62.37689 * 17 16 14 37 37 H 1.09004 * 109.47850 * 178.86005 * 19 18 17 38 38 H 1.08998 * 109.47949 * 58.82754 * 19 18 17 39 39 H 1.08995 * 109.47121 * 179.97438 * 23 12 11 40 40 H 1.08995 * 109.47699 * 300.00253 * 23 12 11 41 41 H 1.09004 * 109.47354 * 300.00138 * 24 9 7 42 42 H 1.09003 * 109.47692 * 60.00440 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 0.6011 -5.0678 -1.2507 13 7 1.4460 -4.9897 -2.4499 14 6 0.8072 -5.6626 -3.5887 15 1 -0.2763 -5.5890 -3.4948 16 6 1.2565 -4.9987 -4.8940 17 6 0.6485 -5.7554 -6.0778 18 8 1.0473 -7.1265 -6.0206 19 6 0.6140 -7.8114 -4.8436 20 6 1.2206 -7.1374 -3.6101 21 1 2.3073 -7.2104 -3.6525 22 9 0.7530 -7.7709 -2.4537 23 6 -0.3932 -3.9049 -1.2506 24 6 0.3710 -2.5799 -1.2494 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8534 -5.0451 0.8886 30 1 2.1887 -5.8155 -0.0016 31 1 0.0558 -6.0116 -1.2509 32 1 2.3627 -5.3718 -2.2719 33 1 0.9178 -3.9628 -4.9112 34 1 2.3440 -5.0286 -4.9623 35 1 0.9993 -5.3135 -7.0105 36 1 -0.4385 -5.6908 -6.0312 37 1 0.9399 -8.8507 -4.8871 38 1 -0.4735 -7.7737 -4.7806 39 1 -1.0193 -3.9622 -2.1410 40 1 -1.0201 -3.9628 -0.3609 41 1 -0.3374 -1.7514 -1.2490 42 1 0.9973 -2.5220 -2.1397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:49 Heat of formation + Delta-G solvation = -133.939718 kcal Electronic energy + Delta-G solvation = -22351.046630 eV Core-core repulsion = 19050.451626 eV Total energy + Delta-G solvation = -3300.595004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.80903 -40.46406 -39.45155 -36.34826 -34.52192 -32.26918 -31.54483 -31.32103 -29.57706 -26.47456 -24.82526 -24.40174 -23.21752 -22.25969 -21.51132 -19.78982 -18.33628 -17.88978 -17.58077 -16.98052 -16.68078 -16.56136 -16.27922 -15.85196 -15.42565 -15.12635 -14.63022 -14.58214 -14.20857 -13.95409 -13.71255 -13.54873 -13.23023 -12.96093 -12.84433 -12.68488 -12.50367 -12.36030 -12.24526 -12.02195 -11.87886 -11.73161 -11.59404 -11.37670 -11.10550 -10.70851 -10.64601 -10.38555 -10.24953 -9.16239 -8.00936 -6.14495 1.42280 1.43506 1.50942 2.47014 2.75794 3.09269 3.24760 3.34191 3.49015 3.69559 3.83417 4.01405 4.16373 4.20153 4.24745 4.31246 4.45623 4.50665 4.59477 4.68330 4.75325 4.82372 4.89914 4.90876 4.94263 5.00626 5.06142 5.13096 5.19590 5.27086 5.34726 5.51862 5.63524 5.71262 5.84868 6.09230 6.15193 6.19891 6.31987 6.50447 6.54115 6.99063 7.52535 9.02152 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.004816 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.939056 B = 5812.234144 C = 6327.893734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.047 0.953 9 C 0.048 3.952 10 C -0.092 4.092 11 C -0.112 4.112 12 C 0.102 3.898 13 N -0.670 5.670 14 C 0.065 3.935 15 H 0.078 0.922 16 C -0.135 4.135 17 C 0.057 3.943 18 O -0.383 6.383 19 C 0.045 3.955 20 C 0.030 3.970 21 H 0.099 0.901 22 F -0.216 7.216 23 C -0.099 4.099 24 C -0.082 4.082 25 H 0.257 0.743 26 H -0.019 1.019 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.344 0.656 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 -15.348 -10.801 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.029 3.971 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.008 4.008 13 N -0.301 5.301 14 C -0.046 4.046 15 H 0.097 0.903 16 C -0.173 4.173 17 C -0.020 4.020 18 O -0.302 6.302 19 C -0.033 4.033 20 C -0.009 4.009 21 H 0.117 0.883 22 F -0.197 7.197 23 C -0.137 4.137 24 C -0.120 4.120 25 H 0.066 0.934 26 H -0.001 1.001 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.699 -14.687 -11.066 18.402 hybrid contribution 0.138 0.474 0.959 1.078 sum 0.837 -14.213 -10.107 17.460 Atomic orbital electron populations 1.70041 1.07120 1.26765 1.51891 1.25704 0.95601 1.02155 0.95166 0.85761 0.78475 0.79564 0.78719 1.19689 1.21093 1.19881 1.21601 0.92820 0.92560 1.49784 0.93440 1.18592 0.93087 0.92189 0.93199 1.21367 0.97778 0.94147 0.99697 1.21674 0.98562 0.97644 0.97100 1.21405 0.93817 0.96281 0.89262 1.60465 1.05471 1.59398 1.04741 1.22288 0.99690 0.89668 0.92979 0.90342 1.22142 1.02287 1.00604 0.92300 1.22836 0.99320 0.80587 0.99225 1.87961 1.78231 1.24269 1.39734 1.23118 0.99513 0.97405 0.83277 1.23233 1.00979 0.93858 0.82796 0.88296 1.92784 1.90881 1.83886 1.52191 1.21510 0.96865 0.96192 0.99176 1.21128 0.98191 0.94710 0.97967 0.93357 1.00059 0.94666 0.92453 0.92550 0.91113 0.93100 0.83647 0.90177 0.90589 0.86485 0.92066 0.86450 0.91479 0.93431 0.94137 0.93893 0.94223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 11.32 21.45 0.24 -54.35 16 2 C 0.01 0.66 5.30 84.65 0.45 1.11 16 3 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.53 -30.04 8.56 25.60 0.22 -29.82 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 9 C 0.05 2.45 2.10 -11.54 -0.02 2.42 16 10 C -0.09 -3.82 4.98 30.59 0.15 -3.67 16 11 C -0.11 -3.79 5.29 30.59 0.16 -3.62 16 12 C 0.10 3.29 2.45 44.92 0.11 3.40 16 13 N -0.67 -19.30 4.62 -468.85 -2.17 -21.47 16 14 C 0.06 1.52 2.25 45.04 0.10 1.62 16 15 H 0.08 1.99 7.23 -2.38 -0.02 1.97 16 16 C -0.13 -2.81 5.75 30.68 0.18 -2.64 16 17 C 0.06 0.96 6.84 72.01 0.49 1.46 16 18 O -0.38 -7.31 10.77 -148.98 -1.60 -8.91 16 19 C 0.04 0.77 6.58 72.01 0.47 1.24 16 20 C 0.03 0.60 3.43 30.69 0.11 0.70 16 21 H 0.10 1.85 8.07 -2.39 -0.02 1.83 16 22 F -0.22 -5.25 15.37 44.97 0.69 -4.56 16 23 C -0.10 -3.87 5.53 30.58 0.17 -3.71 16 24 C -0.08 -3.95 4.82 30.58 0.15 -3.80 16 25 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 26 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 27 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.06 2.34 7.44 -2.39 -0.02 2.32 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 31 H 0.05 1.56 6.33 -2.39 -0.02 1.55 16 32 H 0.34 9.21 7.74 -89.69 -0.69 8.51 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.73 7.61 -2.39 -0.02 1.71 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 2.39 6.07 -2.38 -0.01 2.38 16 42 H 0.04 1.93 7.60 -2.39 -0.02 1.91 16 Total: -1.00 -62.94 320.51 2.22 -60.72 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.30 Total: 17.13 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 2.73 Total: -35.30 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.93 Total: -75.81 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -1.60 Total: -8.91 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.69 Total: -4.56 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -62.94 2.22 -60.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.219 kcal (2) G-P(sol) polarization free energy of solvation -62.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds