Wall clock time and date at job start Mon Mar 30 2020 01:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47256 * 269.99905 * 3 2 1 5 5 H 1.48506 * 109.46930 * 29.99746 * 3 2 1 6 6 H 1.48499 * 109.47104 * 149.99608 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 11 11 C 1.52999 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 13 13 N 1.46905 * 109.46858 * 179.97438 * 12 11 10 14 14 C 1.46848 * 110.99599 * 184.20606 * 13 12 11 15 15 C 1.53034 * 109.52278 * 174.15945 * 14 13 12 16 16 C 1.53117 * 109.27784 * 59.17869 * 15 14 13 17 17 H 1.09002 * 109.52475 * 182.44346 * 16 15 14 18 18 F 1.39906 * 109.52337 * 62.25376 * 16 15 14 19 19 C 1.53121 * 109.16366 * 302.34822 * 16 15 14 20 20 H 1.08998 * 109.53222 * 297.69261 * 19 16 15 21 21 O 1.42900 * 109.50541 * 177.59345 * 19 16 15 22 22 C 1.46845 * 111.00204 * 60.00038 * 13 12 11 23 23 C 1.52997 * 109.47452 * 59.99536 * 12 11 10 24 24 C 1.53000 * 109.47083 * 179.97438 * 9 7 2 25 25 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 27 27 H 1.08996 * 109.47853 * 300.00179 * 10 9 7 28 28 H 1.09002 * 109.47153 * 60.00207 * 10 9 7 29 29 H 1.09000 * 109.47486 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46716 * 60.00091 * 11 10 9 31 31 H 1.09002 * 109.46935 * 299.99411 * 12 11 10 32 32 H 1.09001 * 109.46333 * 294.17474 * 14 13 12 33 33 H 1.09001 * 109.46326 * 54.14707 * 14 13 12 34 34 H 1.09001 * 109.50502 * 299.24182 * 15 14 13 35 35 H 1.08998 * 109.50689 * 179.11872 * 15 14 13 36 36 H 0.96705 * 113.99417 * 60.19806 * 21 19 16 37 37 H 1.09002 * 109.45754 * 305.85174 * 22 13 12 38 38 H 1.08993 * 109.46225 * 65.81891 * 22 13 12 39 39 H 1.08993 * 109.47194 * 179.97438 * 23 12 11 40 40 H 1.09002 * 109.46695 * 59.99734 * 23 12 11 41 41 H 1.08992 * 109.47399 * 299.99938 * 24 9 7 42 42 H 1.09004 * 109.46724 * 60.00424 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.3719 -2.5804 -1.2489 11 6 -0.3927 -3.9057 -1.2493 12 6 0.6020 -5.0683 -1.2490 13 7 -0.1322 -6.3407 -1.2488 14 6 0.7892 -7.4798 -1.1479 15 6 -0.0128 -8.7751 -1.0040 16 6 -0.9279 -8.9410 -2.2204 17 1 -1.5326 -9.8400 -2.1015 18 9 -0.1508 -9.0486 -3.3788 19 6 -1.8440 -7.7190 -2.3305 20 1 -2.4773 -7.6574 -1.4455 21 8 -2.6626 -7.8399 -3.4955 22 6 -0.9888 -6.4543 -2.4360 23 6 1.4812 -4.9870 0.0005 24 6 2.2453 -3.6620 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 0.8903 27 1 -0.3365 -1.7520 -1.2494 28 1 0.9988 -2.5228 -2.1388 29 1 -1.0187 -3.9638 -2.1397 30 1 -1.0196 -3.9637 -0.3595 31 1 1.2289 -5.0103 -2.1388 32 1 1.4033 -7.5309 -2.0470 33 1 1.4313 -7.3515 -0.2765 34 1 -0.6168 -8.7304 -0.0977 35 1 0.6709 -9.6219 -0.9448 36 1 -3.2324 -8.6213 -3.4964 37 1 -1.6381 -5.5812 -2.5001 38 1 -0.3664 -6.5102 -3.3290 39 1 2.1894 -5.8155 0.0009 40 1 0.8542 -5.0450 0.8902 41 1 2.8720 -3.6044 -0.8894 42 1 2.8719 -3.6043 0.8906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:38 Heat of formation + Delta-G solvation = -114.641279 kcal Electronic energy + Delta-G solvation = -22118.354780 eV Core-core repulsion = 18818.596619 eV Total energy + Delta-G solvation = -3299.758161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.78619 -39.37713 -37.40715 -35.80868 -33.10047 -31.74098 -30.40965 -29.35742 -28.31295 -25.01615 -23.48161 -23.36939 -21.02493 -20.53613 -19.71857 -18.71596 -17.62799 -16.93376 -16.25163 -15.85022 -15.37850 -15.17971 -14.62944 -14.53692 -13.93409 -13.70675 -13.32695 -13.08700 -12.95715 -12.62013 -12.56616 -12.17392 -11.98514 -11.63376 -11.39638 -11.26102 -11.00675 -10.81869 -10.73291 -10.49600 -10.47779 -10.27250 -10.13757 -9.90433 -9.75163 -9.31094 -8.82753 -8.60441 -8.25949 -8.14706 -5.93656 -3.99655 3.32959 3.39816 3.42868 3.58316 4.19834 4.21536 4.47317 4.48643 4.58298 4.72360 5.00897 5.20211 5.29828 5.35080 5.36614 5.44765 5.54573 5.59600 5.78702 5.87139 5.92379 5.96125 6.01309 6.18195 6.32366 6.43318 6.46169 6.55841 6.72151 6.79464 6.97188 7.15116 7.23277 7.27601 7.37576 7.41098 7.57878 7.80003 8.07497 8.20776 8.52274 9.04581 9.64817 11.11873 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.038913 B = 0.004109 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.384038 B = 6813.188442 C = 7241.827308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.109 4.109 12 C 0.094 3.906 13 N -0.532 5.532 14 C 0.045 3.955 15 C -0.140 4.140 16 C 0.058 3.942 17 H 0.082 0.918 18 F -0.207 7.207 19 C 0.086 3.914 20 H 0.082 0.918 21 O -0.558 6.558 22 C 0.058 3.942 23 C -0.108 4.108 24 C -0.108 4.108 25 H 0.259 0.741 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.378 0.622 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 -18.115 -2.566 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.013 4.013 13 N -0.258 5.258 14 C -0.083 4.083 15 C -0.179 4.179 16 C 0.021 3.979 17 H 0.099 0.901 18 F -0.188 7.188 19 C 0.026 3.974 20 H 0.099 0.901 21 O -0.362 6.362 22 C -0.070 4.070 23 C -0.146 4.146 24 C -0.146 4.146 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.225 0.775 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.645 -17.441 -2.346 17.972 hybrid contribution 0.731 0.286 -0.683 1.040 sum -2.914 -17.155 -3.029 17.663 Atomic orbital electron populations 1.69875 1.05819 1.26239 1.51012 1.24960 0.94820 0.98931 0.95257 0.86664 0.79915 0.83796 0.78021 1.20800 1.21304 1.20015 1.21246 0.92853 0.90843 1.50158 0.92879 1.18652 0.92584 0.91400 0.94305 1.21618 0.99617 0.94734 0.98709 1.21738 0.97274 0.95093 1.00577 1.21710 0.94545 0.87388 0.97696 1.61949 1.22633 1.02700 1.38525 1.22162 0.94602 0.89682 1.01862 1.22163 0.99337 0.98700 0.97665 1.22420 0.92707 0.99808 0.82918 0.90053 1.92816 1.77031 1.97347 1.51585 1.22367 0.91621 0.94485 0.88955 0.90064 1.86547 1.57607 1.49620 1.42443 1.21876 0.96102 0.96849 0.92165 1.21664 0.97551 0.98161 0.97194 1.21615 0.98640 0.94245 1.00072 0.93119 0.95579 0.88828 0.95035 0.93882 0.91966 0.94601 0.94481 0.89231 0.89113 0.90232 0.77507 0.88791 0.93904 0.93600 0.91688 0.93615 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 11.32 55.43 0.63 -24.79 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.07 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 10 C -0.11 -2.54 4.98 -26.73 -0.13 -2.67 16 11 C -0.11 -2.11 4.98 -26.73 -0.13 -2.25 16 12 C 0.09 1.61 1.95 -67.71 -0.13 1.48 16 13 N -0.53 -7.80 4.53 -226.69 -1.03 -8.83 16 14 C 0.04 0.57 5.02 -3.84 -0.02 0.55 16 15 C -0.14 -1.38 5.88 -26.65 -0.16 -1.53 16 16 C 0.06 0.59 3.81 -26.61 -0.10 0.49 16 17 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 18 F -0.21 -2.76 16.15 2.25 0.04 -2.73 16 19 C 0.09 0.98 3.44 -26.65 -0.09 0.88 16 20 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 21 O -0.56 -6.33 13.24 -35.23 -0.47 -6.79 16 22 C 0.06 0.84 4.76 -3.84 -0.02 0.82 16 23 C -0.11 -1.87 4.85 -26.76 -0.13 -2.00 16 24 C -0.11 -2.22 5.14 -26.76 -0.14 -2.35 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.79 6.28 -51.93 -0.33 0.46 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.51 7.87 -51.93 -0.41 0.10 16 33 H 0.09 1.09 5.90 -51.93 -0.31 0.79 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.38 2.39 9.08 45.56 0.41 2.80 16 37 H 0.09 1.44 6.01 -51.93 -0.31 1.13 16 38 H 0.04 0.68 7.87 -51.93 -0.41 0.27 16 39 H 0.05 0.69 6.21 -51.93 -0.32 0.37 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -29.88 317.79 -8.87 -38.76 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.18 Total: 1.60 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.64 Total: -18.34 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.40 Total: -33.62 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.47 Total: -6.79 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.88 -8.87 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.884 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds