Wall clock time and date at job start Mon Mar 30 2020 01:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99639 * 2 1 4 4 H 1.48497 * 109.46861 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47273 * 60.00180 * 3 2 1 6 6 H 1.48504 * 109.47228 * 299.99919 * 3 2 1 7 7 C 1.37868 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99938 * 175.15794 * 7 2 1 9 9 C 1.50702 * 120.00232 * 355.16290 * 7 2 1 10 10 C 1.53010 * 109.46843 * 275.21258 * 9 7 2 11 11 C 1.52997 * 109.46968 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46943 * 59.99903 * 11 10 9 13 13 N 1.46909 * 109.46666 * 179.97438 * 12 11 10 14 14 C 1.48534 * 110.99787 * 177.60186 * 13 12 11 15 15 C 1.54931 * 103.22798 * 159.71943 * 14 13 12 16 16 C 1.54599 * 102.92357 * 322.59033 * 15 14 13 17 17 F 1.39894 * 110.30712 * 263.03886 * 16 15 14 18 18 C 1.52998 * 110.30824 * 140.86774 * 16 15 14 19 19 O 1.42900 * 109.46895 * 64.28818 * 18 16 15 20 20 C 1.47895 * 111.00120 * 295.00203 * 13 12 11 21 21 C 1.53000 * 109.47436 * 299.99482 * 12 11 10 22 22 C 1.52994 * 109.47368 * 155.21134 * 9 7 2 23 23 H 0.96998 * 119.99847 * 185.18750 * 1 2 3 24 24 H 1.09001 * 109.46889 * 35.20719 * 9 7 2 25 25 H 1.08999 * 109.46715 * 299.99921 * 10 9 7 26 26 H 1.08999 * 109.47132 * 60.00068 * 10 9 7 27 27 H 1.09001 * 109.47437 * 300.00387 * 11 10 9 28 28 H 1.08995 * 109.47351 * 179.97438 * 11 10 9 29 29 H 1.08996 * 109.47242 * 60.00366 * 12 11 10 30 30 H 1.08997 * 110.66872 * 278.16188 * 14 13 12 31 31 H 1.09005 * 110.66849 * 41.28559 * 14 13 12 32 32 H 1.08993 * 110.72815 * 204.23091 * 15 14 13 33 33 H 1.09002 * 110.87377 * 81.01541 * 15 14 13 34 34 H 1.09003 * 109.46624 * 184.28161 * 18 16 15 35 35 H 1.08994 * 109.47691 * 304.28496 * 18 16 15 36 36 H 0.96706 * 113.99557 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.91663 * 333.50573 * 20 13 12 38 38 H 1.08996 * 109.91738 * 94.60855 * 20 13 12 39 39 H 1.09001 * 109.47205 * 300.00790 * 21 12 11 40 40 H 1.08999 * 109.47201 * 179.97438 * 21 12 11 41 41 H 1.08991 * 109.47395 * 299.99974 * 22 9 7 42 42 H 1.09009 * 109.47161 * 60.00022 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 1.2124 6 1 1.8903 2.3965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1956 -0.0795 9 6 1.2551 -2.4968 0.1089 10 6 0.9931 -2.8122 1.5831 11 6 0.2317 -4.1346 1.6942 12 6 1.0656 -5.2569 1.0729 13 7 0.3347 -6.5267 1.1802 14 6 1.0895 -7.6315 0.5352 15 6 0.4805 -8.9013 1.1809 16 6 0.2353 -8.4622 2.6428 17 9 1.2937 -8.8768 3.4582 18 6 -1.0874 -9.0359 3.1548 19 8 -1.0053 -10.4621 3.1920 20 6 0.1680 -6.9245 2.5949 21 6 1.3275 -4.9417 -0.4011 22 6 2.0894 -3.6189 -0.5122 23 1 -0.4850 -0.8366 0.0760 24 1 0.3053 -2.4151 -0.4195 25 1 1.9430 -2.8938 2.1115 26 1 0.3987 -2.0128 2.0255 27 1 -0.7181 -4.0525 1.1658 28 1 0.0455 -4.3594 2.7443 29 1 2.0154 -5.3390 1.6013 30 1 0.9258 -7.6314 -0.5424 31 1 2.1526 -7.5558 0.7637 32 1 1.1862 -9.7309 1.1405 33 1 -0.4581 -9.1712 0.6967 34 1 -1.2836 -8.6570 4.1579 35 1 -1.8959 -8.7358 2.4884 36 1 -1.8106 -10.8942 3.5081 37 1 0.9705 -6.4988 3.1973 38 1 -0.7973 -6.5804 2.9661 39 1 0.3776 -4.8595 -0.9295 40 1 1.9219 -5.7410 -0.8436 41 1 2.2760 -3.3943 -1.5622 42 1 3.0393 -3.7006 0.0163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:13 Heat of formation + Delta-G solvation = -140.166732 kcal Electronic energy + Delta-G solvation = -21865.509169 eV Core-core repulsion = 18564.644141 eV Total energy + Delta-G solvation = -3300.865027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.77771 -40.67398 -38.60383 -37.43436 -35.03942 -32.74259 -31.90612 -30.42912 -29.57907 -26.55470 -25.60000 -23.70862 -23.10604 -21.83596 -21.19425 -20.69283 -18.83635 -18.46126 -17.54296 -17.31866 -16.38396 -16.02002 -15.89687 -15.65471 -15.32335 -15.09957 -15.05116 -14.75006 -14.60032 -14.07276 -13.76446 -13.57153 -13.48795 -13.06942 -12.76494 -12.73869 -12.47142 -12.45713 -12.14478 -11.98920 -11.94937 -11.85293 -11.80932 -11.56240 -11.21533 -11.04027 -10.78434 -10.45458 -10.31661 -9.55315 -8.56546 -6.27076 1.52364 1.60919 1.77101 2.57702 2.70251 2.91361 3.22742 3.27649 3.39670 3.58972 3.81982 3.84679 4.02232 4.13314 4.20567 4.27184 4.35663 4.43839 4.44844 4.50692 4.61187 4.67138 4.67569 4.69332 4.75427 4.80706 4.88223 4.95544 5.04428 5.08065 5.11250 5.18710 5.31410 5.42344 5.60820 5.74992 5.85175 5.93804 6.18261 6.28565 6.72098 6.81814 7.52587 8.82606 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.045033 B = 0.003734 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.619303 B = 7497.544512 C = 7683.548451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.032 4.032 3 Si 1.114 2.886 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.606 4.606 8 H 0.040 0.960 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.098 4.098 12 C 0.092 3.908 13 N -0.510 5.510 14 C 0.029 3.971 15 C -0.126 4.126 16 C 0.102 3.898 17 F -0.217 7.217 18 C 0.069 3.931 19 O -0.585 6.585 20 C 0.018 3.982 21 C -0.099 4.099 22 C -0.095 4.095 23 H 0.259 0.741 24 H 0.003 0.997 25 H 0.040 0.960 26 H 0.024 0.976 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.403 0.597 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 -19.622 5.015 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.230 4.230 3 Si 0.937 3.063 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.644 4.644 8 H 0.058 0.942 9 C 0.006 3.994 10 C -0.135 4.135 11 C -0.136 4.136 12 C -0.016 4.016 13 N -0.234 5.234 14 C -0.098 4.098 15 C -0.164 4.164 16 C 0.083 3.917 17 F -0.198 7.198 18 C -0.010 4.010 19 O -0.394 6.394 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.133 4.133 23 H 0.070 0.930 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.487 -17.802 4.492 18.528 hybrid contribution 0.534 -1.428 0.807 1.725 sum -1.953 -19.231 5.299 20.043 Atomic orbital electron populations 1.70847 1.07706 1.30447 1.48841 1.27131 0.96662 1.06135 0.93025 0.82971 0.74254 0.71756 0.77358 1.19942 1.20670 1.20648 1.22426 0.94398 0.93590 1.54028 0.94193 1.18866 0.94806 0.93472 0.92291 1.21500 0.98001 0.95005 0.98976 1.21496 0.98522 0.93661 0.99911 1.21672 0.94239 0.89002 0.96722 1.64899 1.45617 1.01952 1.10934 1.23365 0.95865 0.89647 1.00939 1.22994 1.03633 0.97455 0.92290 1.22006 0.84789 0.93960 0.90914 1.92838 1.59920 1.91788 1.75254 1.22662 0.94843 0.81874 1.01586 1.86443 1.44334 1.18414 1.90183 1.23438 1.03998 0.92365 0.91199 1.21533 1.00344 0.96820 0.94988 1.21412 0.98101 0.94310 0.99498 0.93013 0.97869 0.94083 0.95681 0.92523 0.91845 0.94761 0.88208 0.93969 0.89557 0.87714 0.91497 0.89414 0.74611 0.92906 0.87403 0.92188 0.90846 0.93647 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.63 21.44 0.29 -57.36 16 2 C -0.03 -1.82 5.45 84.65 0.46 -1.36 16 3 Si 1.11 51.04 29.91 68.60 2.05 53.09 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.61 -34.29 8.31 25.60 0.21 -34.08 16 8 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 9 C 0.02 1.21 1.83 -11.54 -0.02 1.19 16 10 C -0.10 -4.32 5.19 30.60 0.16 -4.16 16 11 C -0.10 -3.49 5.19 30.59 0.16 -3.33 16 12 C 0.09 2.90 1.65 44.91 0.07 2.98 16 13 N -0.51 -13.28 5.11 -857.86 -4.38 -17.66 16 14 C 0.03 0.66 5.31 86.65 0.46 1.12 16 15 C -0.13 -2.47 6.20 31.80 0.20 -2.28 16 16 C 0.10 2.18 1.44 -9.91 -0.01 2.16 16 17 F -0.22 -5.88 16.78 44.97 0.75 -5.12 16 18 C 0.07 1.07 5.91 71.98 0.43 1.50 16 19 O -0.58 -9.34 13.37 -148.98 -1.99 -11.33 16 20 C 0.02 0.43 5.06 86.45 0.44 0.87 16 21 C -0.10 -3.30 5.00 30.61 0.15 -3.15 16 22 C -0.09 -3.94 5.19 30.61 0.16 -3.78 16 23 H 0.26 16.02 6.66 -92.71 -0.62 15.41 16 24 H 0.00 0.17 6.67 -2.39 -0.02 0.16 16 25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 2.00 7.35 -2.39 -0.02 1.99 16 29 H 0.03 1.13 7.96 -2.39 -0.02 1.12 16 30 H 0.10 2.06 7.66 -2.39 -0.02 2.04 16 31 H 0.04 1.01 8.02 -2.38 -0.02 0.99 16 32 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 33 H 0.10 1.78 7.84 -2.39 -0.02 1.76 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.07 8.11 -2.39 -0.02 1.05 16 36 H 0.40 2.34 9.12 -74.05 -0.68 1.66 16 37 H 0.05 1.36 7.53 -2.39 -0.02 1.34 16 38 H 0.11 2.18 7.69 -2.39 -0.02 2.16 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 2.08 6.89 -2.39 -0.02 2.07 16 41 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -67.89 326.25 0.06 -67.84 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.47 Total: 12.86 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 2.86 Total: -42.32 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -4.09 Total: -75.02 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.99 Total: -11.33 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.75 Total: -5.12 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -67.89 0.06 -67.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.328 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds