Wall clock time and date at job start Mon Mar 30 2020 01:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99753 * 2 1 4 4 H 1.48503 * 109.47325 * 239.99739 * 3 2 1 5 5 H 1.48496 * 109.47516 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47078 * 119.99838 * 3 2 1 7 7 C 1.37873 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99869 * 180.27941 * 7 2 1 9 9 C 1.50698 * 120.00181 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47204 * 300.00090 * 9 7 2 11 11 C 1.53002 * 109.47261 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46767 * 60.00377 * 11 10 9 13 13 N 1.46901 * 109.47132 * 179.97438 * 12 11 10 14 14 C 1.47904 * 110.99880 * 61.27207 * 13 12 11 15 15 C 1.53990 * 107.05484 * 214.15644 * 14 13 12 16 16 H 1.09005 * 110.31085 * 120.24062 * 15 14 13 17 17 F 1.39898 * 110.30889 * 242.30458 * 15 14 13 18 18 C 1.54588 * 105.14388 * 1.22570 * 15 14 13 19 19 C 1.48534 * 111.00052 * 303.87611 * 13 12 11 20 20 H 1.09002 * 110.66497 * 41.28037 * 19 13 12 21 21 C 1.53001 * 110.66548 * 278.15454 * 19 13 12 22 22 O 1.42904 * 109.47136 * 295.82415 * 21 19 13 23 23 C 1.53000 * 109.46922 * 299.99831 * 12 11 10 24 24 C 1.52999 * 109.47290 * 179.97438 * 9 7 2 25 25 H 0.97003 * 120.00264 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47080 * 59.99942 * 9 7 2 27 27 H 1.08999 * 109.46980 * 299.99912 * 10 9 7 28 28 H 1.09001 * 109.46829 * 59.99811 * 10 9 7 29 29 H 1.08996 * 109.47032 * 300.00193 * 11 10 9 30 30 H 1.08997 * 109.46813 * 179.97438 * 11 10 9 31 31 H 1.08999 * 109.47273 * 59.99627 * 12 11 10 32 32 H 1.09000 * 109.91357 * 333.50791 * 14 13 12 33 33 H 1.09002 * 109.91941 * 94.80166 * 14 13 12 34 34 H 1.08995 * 110.73013 * 140.31827 * 18 15 14 35 35 H 1.09002 * 110.72525 * 263.42484 * 18 15 14 36 36 H 1.09003 * 109.47024 * 55.81645 * 21 19 13 37 37 H 1.08997 * 109.47160 * 175.82350 * 21 19 13 38 38 H 0.96700 * 114.00026 * 180.02562 * 22 21 19 39 39 H 1.08999 * 109.46980 * 299.99976 * 23 12 11 40 40 H 1.09000 * 109.47271 * 180.02562 * 23 12 11 41 41 H 1.08989 * 109.47586 * 300.00139 * 24 9 7 42 42 H 1.09004 * 109.47027 * 60.00786 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0051 9 6 1.2511 -2.4991 0.0005 10 6 0.3710 -2.5800 1.2494 11 6 -0.3944 -3.9047 1.2491 12 6 0.5995 -5.0679 1.2496 13 7 -0.1353 -6.3399 1.2499 14 6 -0.9750 -6.4673 0.0390 15 6 -2.2463 -7.2331 0.4495 16 1 -3.1314 -6.6249 0.2625 17 9 -2.3322 -8.4417 -0.2499 18 6 -2.0860 -7.4996 1.9638 19 6 -1.0710 -6.4139 2.4011 20 1 -1.5716 -5.4575 2.5519 21 6 -0.3327 -6.8446 3.6701 22 8 0.1698 -8.1717 3.5017 23 6 1.4796 -4.9871 0.0007 24 6 2.2454 -3.6620 0.0005 25 1 -0.4851 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.9973 -2.5220 2.1396 28 1 -0.3373 -1.7515 1.2489 29 1 -1.0207 -3.9623 0.3589 30 1 -1.0210 -3.9625 2.1391 31 1 1.2259 -5.0103 2.1398 32 1 -1.2414 -5.4782 -0.3338 33 1 -0.4376 -7.0240 -0.7287 34 1 -3.0365 -7.3698 2.4811 35 1 -1.6862 -8.4983 2.1395 36 1 0.4972 -6.1629 3.8568 37 1 -1.0198 -6.8209 4.5159 38 1 0.6501 -8.5108 4.2694 39 1 0.8533 -5.0447 -0.8895 40 1 2.1875 -5.8160 0.0007 41 1 2.8720 -3.6043 -0.8893 42 1 2.8720 -3.6043 0.8906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:18 Heat of formation + Delta-G solvation = -108.371031 kcal Electronic energy + Delta-G solvation = -22313.099049 eV Core-core repulsion = 19013.612787 eV Total energy + Delta-G solvation = -3299.486262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.52801 -39.77964 -37.05222 -35.79189 -32.96739 -30.99177 -30.20148 -29.54430 -27.76956 -25.26749 -24.22579 -22.01463 -21.89499 -20.47498 -19.52053 -18.42655 -17.58156 -16.62504 -16.36683 -16.02804 -15.08484 -14.69619 -14.65739 -14.30003 -13.87142 -13.76706 -13.45384 -13.29123 -12.88307 -12.58354 -12.51251 -12.04059 -11.69457 -11.47569 -11.33991 -11.06790 -10.92552 -10.73176 -10.70347 -10.53044 -10.42654 -10.29129 -10.15828 -9.98439 -9.87988 -9.33498 -9.01524 -8.69654 -8.33327 -7.94525 -5.98682 -4.04736 3.30867 3.35591 3.38442 4.00810 4.22557 4.39178 4.43517 4.61605 4.65488 4.92315 5.19812 5.25428 5.30794 5.32256 5.42092 5.48718 5.55148 5.67647 5.72527 5.79833 5.90855 6.05891 6.14804 6.16674 6.26086 6.36423 6.43329 6.56468 6.64791 6.79677 6.89049 7.08960 7.11641 7.19444 7.37456 7.49107 7.68163 7.73902 8.00894 8.13826 8.47134 8.99365 9.59972 11.06723 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.004601 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.855862 B = 6084.670206 C = 6323.266592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.104 4.104 11 C -0.151 4.151 12 C 0.077 3.923 13 N -0.495 5.495 14 C 0.006 3.994 15 C 0.080 3.920 16 H 0.087 0.913 17 F -0.210 7.210 18 C -0.139 4.139 19 C 0.054 3.946 20 H 0.080 0.920 21 C 0.095 3.905 22 O -0.557 6.557 23 C -0.105 4.105 24 C -0.108 4.108 25 H 0.259 0.741 26 H 0.023 0.977 27 H 0.033 0.967 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.371 0.629 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -13.171 6.265 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.142 4.142 11 C -0.190 4.190 12 C -0.031 4.031 13 N -0.218 5.218 14 C -0.122 4.122 15 C 0.043 3.957 16 H 0.105 0.895 17 F -0.191 7.191 18 C -0.177 4.177 19 C -0.054 4.054 20 H 0.097 0.903 21 C 0.016 3.984 22 O -0.361 6.361 23 C -0.143 4.143 24 C -0.146 4.146 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.217 0.783 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.121 -13.421 5.673 15.142 hybrid contribution 0.097 1.643 0.506 1.722 sum -4.024 -11.778 6.179 13.895 Atomic orbital electron populations 1.69861 1.05863 1.26372 1.51047 1.24960 0.94826 0.98973 0.95210 0.86711 0.79648 0.83349 0.78593 1.20319 1.21370 1.20359 1.21211 0.92869 0.90790 1.50174 0.92849 1.18645 0.92623 0.91599 0.94067 1.21542 0.99449 0.94372 0.98871 1.22327 0.98617 0.98128 0.99909 1.21935 0.95228 0.86189 0.99703 1.65072 1.22537 1.33908 1.00287 1.23537 0.92745 1.00665 0.95299 1.22457 0.99415 0.82169 0.91676 0.89479 1.92806 1.97561 1.47913 1.80833 1.23040 0.98967 1.01965 0.93700 1.22938 0.92606 0.97739 0.92112 0.90272 1.21939 0.96732 0.84314 0.95389 1.86581 1.75810 1.30200 1.43493 1.21580 0.98127 0.98468 0.96165 1.21624 0.98613 0.94130 1.00207 0.93077 0.95902 0.94849 0.89098 0.92537 0.93722 0.90369 0.91162 0.89257 0.90634 0.88248 0.93251 0.93662 0.78335 0.92749 0.92802 0.93297 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.88 8.56 -34.44 -0.29 -14.17 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.19 2.10 -91.77 -0.19 0.99 16 10 C -0.10 -2.34 4.98 -26.73 -0.13 -2.47 16 11 C -0.15 -2.74 4.54 -26.73 -0.12 -2.86 16 12 C 0.08 1.29 2.25 -67.71 -0.15 1.14 16 13 N -0.49 -7.46 4.99 -214.72 -1.07 -8.53 16 14 C 0.01 0.08 5.01 -2.75 -0.01 0.07 16 15 C 0.08 1.03 4.78 -25.38 -0.12 0.90 16 16 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 17 F -0.21 -3.08 17.08 2.25 0.04 -3.04 16 18 C -0.14 -1.67 6.22 -24.88 -0.15 -1.82 16 19 C 0.05 0.70 2.55 -65.79 -0.17 0.53 16 20 H 0.08 1.02 5.52 -51.93 -0.29 0.74 16 21 C 0.09 1.07 6.95 37.16 0.26 1.33 16 22 O -0.56 -6.51 12.39 -35.23 -0.44 -6.95 16 23 C -0.11 -1.87 5.08 -26.71 -0.14 -2.01 16 24 C -0.11 -2.21 5.15 -26.71 -0.14 -2.35 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 29 H 0.06 1.06 6.05 -51.93 -0.31 0.74 16 30 H 0.04 0.74 5.99 -51.93 -0.31 0.43 16 31 H 0.08 1.34 7.40 -51.93 -0.38 0.95 16 32 H 0.07 1.06 5.30 -51.93 -0.28 0.78 16 33 H 0.09 1.34 8.02 -51.93 -0.42 0.92 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.33 7.02 -51.93 -0.36 0.97 16 36 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.37 2.62 9.12 45.56 0.42 3.04 16 39 H 0.05 0.97 6.98 -51.93 -0.36 0.61 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -29.38 316.15 -8.48 -37.86 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.92 Total: 3.41 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.46 Total: -19.13 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: -0.44 Total: -32.99 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.44 Total: -6.95 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.38 -8.48 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.510 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds