Wall clock time and date at job start Mon Mar 30 2020 01:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48505 * 109.46996 * 269.99612 * 3 2 1 5 5 H 1.48505 * 109.47263 * 29.99462 * 3 2 1 6 6 H 1.48493 * 109.47386 * 149.99981 * 3 2 1 7 7 C 1.37875 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00168 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99922 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47571 * 300.00367 * 11 10 9 13 13 N 1.46898 * 109.47503 * 179.97438 * 12 11 10 14 14 C 1.48711 * 111.10536 * 67.29234 * 13 12 11 15 15 C 1.51542 * 104.20241 * 154.02273 * 14 13 12 16 16 C 1.37987 * 132.18846 * 157.15248 * 15 14 13 17 17 C 1.38284 * 119.93637 * 180.33822 * 16 15 14 18 18 C 1.38265 * 120.04269 * 359.95321 * 17 16 15 19 19 C 1.38285 * 120.03402 * 0.04268 * 18 17 16 20 20 C 1.37986 * 119.93976 * 359.97438 * 19 18 17 21 21 C 1.48918 * 111.00223 * 179.97438 * 13 12 11 22 22 C 1.53001 * 109.47280 * 59.99832 * 12 11 10 23 23 C 1.52994 * 109.47012 * 300.00282 * 9 7 2 24 24 H 0.96995 * 120.00304 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46866 * 60.00734 * 9 7 2 26 26 H 1.09004 * 109.47191 * 60.00309 * 10 9 7 27 27 H 1.08998 * 109.47484 * 300.00461 * 10 9 7 28 28 H 1.09004 * 109.47504 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47464 * 60.00678 * 11 10 9 30 30 H 1.09004 * 109.46814 * 299.99839 * 12 11 10 31 31 H 1.09005 * 110.17432 * 35.46821 * 14 13 12 32 32 H 1.08999 * 110.72834 * 272.84692 * 14 13 12 33 33 H 1.07991 * 120.03062 * 0.29623 * 16 15 14 34 34 H 1.08002 * 119.98310 * 179.97438 * 17 16 15 35 35 H 1.07994 * 119.98500 * 180.02562 * 18 17 16 36 36 H 1.07992 * 120.03281 * 179.97438 * 19 18 17 37 37 H 1.08999 * 110.50127 * 87.13466 * 21 13 12 38 38 H 1.08995 * 110.61550 * 324.50376 * 21 13 12 39 39 H 1.08994 * 109.46751 * 59.99996 * 22 12 11 40 40 H 1.09002 * 109.47251 * 180.02562 * 22 12 11 41 41 H 1.08994 * 109.47202 * 299.99649 * 23 9 7 42 42 H 1.09002 * 109.47205 * 60.00208 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0022 12 6 6.0626 -1.9147 -1.2462 13 7 7.5316 -1.9142 -1.2447 14 6 8.0678 -3.2900 -1.4206 15 6 9.4343 -3.0800 -2.0411 16 6 10.5672 -3.8671 -2.0758 17 6 11.7027 -3.4140 -2.7220 18 6 11.7028 -2.1741 -3.3338 19 6 10.5676 -1.3851 -3.2993 20 6 9.4345 -1.8367 -2.6542 21 6 8.0663 -1.2190 -2.4482 22 6 5.5526 -0.4722 -1.2461 23 6 4.0220 -0.4730 -1.2480 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.6586 -3.1502 -0.8893 27 1 3.6579 -3.1506 0.8906 28 1 5.9149 -3.6642 0.0026 29 1 5.9142 -2.1231 0.8928 30 1 5.7000 -2.4283 -2.1367 31 1 7.4266 -3.8603 -2.0930 32 1 8.1586 -3.7946 -0.4587 33 1 10.5672 -4.8356 -1.5981 34 1 12.5899 -4.0292 -2.7493 35 1 12.5900 -1.8213 -3.8385 36 1 10.5679 -0.4165 -3.7767 37 1 8.1548 -0.1486 -2.2630 38 1 7.4294 -1.4044 -3.3131 39 1 5.9151 0.0411 -0.3556 40 1 5.9163 0.0419 -2.1358 41 1 3.6591 -0.9870 -2.1380 42 1 3.6587 0.5547 -1.2483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:34 Heat of formation + Delta-G solvation = 29.399161 kcal Electronic energy + Delta-G solvation = -20675.121512 eV Core-core repulsion = 17812.378638 eV Total energy + Delta-G solvation = -2862.742874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57729 -38.35941 -36.11811 -32.78667 -31.62093 -31.16564 -30.25876 -28.56818 -27.43593 -24.94495 -22.98933 -22.22693 -21.51656 -20.92232 -20.18592 -19.01194 -16.72986 -16.61060 -15.88175 -15.50473 -15.38982 -14.64643 -14.13272 -13.98881 -13.65781 -13.36735 -13.20576 -13.17280 -12.74873 -12.55824 -12.40566 -12.24754 -11.81987 -11.44023 -11.27189 -11.18962 -10.94987 -10.86686 -10.64803 -10.47594 -9.98262 -9.77768 -9.52055 -9.07958 -9.01387 -8.95689 -8.87129 -8.48398 -8.29133 -6.04137 -4.02654 1.16589 1.21524 3.28965 3.40642 3.43289 3.58082 3.94859 4.27488 4.44211 4.44417 4.83279 4.84247 5.08451 5.17694 5.27380 5.28521 5.32949 5.41588 5.45278 5.48099 5.63782 5.68983 5.84979 5.86711 5.91413 6.04566 6.11572 6.16015 6.22359 6.23735 6.28654 6.31140 6.42403 6.54607 6.65378 6.72643 6.77388 6.81064 6.93546 7.02785 7.16961 7.31810 7.60961 7.82334 8.56649 9.00438 9.59163 11.09377 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.041158 B = 0.004004 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.135265 B = 6992.014400 C = 7504.627566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.072 0.928 9 C 0.014 3.986 10 C -0.097 4.097 11 C -0.108 4.108 12 C 0.078 3.922 13 N -0.493 5.493 14 C 0.071 3.929 15 C -0.097 4.097 16 C -0.102 4.102 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.096 4.096 21 C 0.070 3.930 22 C -0.113 4.113 23 C -0.118 4.118 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.050 -5.254 -6.242 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.550 4.550 8 H 0.090 0.910 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.146 4.146 12 C -0.030 4.030 13 N -0.216 5.216 14 C -0.056 4.056 15 C -0.097 4.097 16 C -0.121 4.121 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.121 4.121 20 C -0.097 4.097 21 C -0.057 4.057 22 C -0.151 4.151 23 C -0.156 4.156 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 22.014 -4.883 -5.698 23.258 hybrid contribution 0.098 0.624 -0.894 1.095 sum 22.112 -4.259 -6.592 23.464 Atomic orbital electron populations 1.69906 1.06318 1.26851 1.51201 1.25039 0.94676 0.99076 0.94572 0.86844 0.80008 0.83579 0.77803 1.20730 1.22667 1.18881 1.21103 0.89046 0.94356 1.50485 0.90971 1.19155 0.96329 0.91892 0.93129 1.21429 0.91833 0.99185 1.01078 1.21607 0.97484 0.98513 0.96995 1.21954 0.84724 0.97830 0.98479 1.66273 1.09651 1.09657 1.36056 1.21882 0.91096 0.92267 1.00387 1.20709 0.95495 0.95117 0.98414 1.20462 0.91961 0.99647 0.99985 1.21058 0.97941 0.96458 0.98534 1.21059 0.97934 0.94733 1.00232 1.20469 0.91988 0.99972 0.99647 1.20709 0.95481 0.95807 0.97692 1.21908 0.91030 1.00016 0.92780 1.21681 0.97751 0.94382 1.01250 1.21971 0.91788 1.00367 1.01449 0.92766 0.95467 0.92936 0.92422 0.93207 0.91534 0.93762 0.92114 0.89096 0.86078 0.85913 0.85916 0.86096 0.89155 0.91987 0.91615 0.93301 0.92356 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.89 22.14 24.37 -169.99 -4.14 18.00 16 4 H -0.28 -6.80 6.87 56.52 0.39 -6.41 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 7 C -0.51 -14.33 9.14 -34.44 -0.31 -14.64 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.01 0.32 1.69 -91.77 -0.16 0.16 16 10 C -0.10 -1.89 5.14 -26.73 -0.14 -2.03 16 11 C -0.11 -1.76 5.22 -26.74 -0.14 -1.90 16 12 C 0.08 1.22 1.65 -67.72 -0.11 1.11 16 13 N -0.49 -7.02 5.37 -225.16 -1.21 -8.22 16 14 C 0.07 0.89 5.55 -3.56 -0.02 0.87 16 15 C -0.10 -1.17 6.28 -104.16 -0.65 -1.82 16 16 C -0.10 -1.05 10.04 -39.66 -0.40 -1.45 16 17 C -0.12 -1.12 10.05 -39.55 -0.40 -1.52 16 18 C -0.12 -1.12 10.05 -39.55 -0.40 -1.52 16 19 C -0.10 -1.07 10.04 -39.66 -0.40 -1.47 16 20 C -0.10 -1.18 6.28 -104.17 -0.65 -1.83 16 21 C 0.07 0.90 5.21 -3.45 -0.02 0.88 16 22 C -0.11 -1.97 5.10 -26.70 -0.14 -2.11 16 23 C -0.12 -2.50 4.68 -26.70 -0.13 -2.62 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.71 7.31 -51.93 -0.38 0.33 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.70 7.88 -51.93 -0.41 0.29 16 31 H 0.06 0.74 7.78 -51.93 -0.40 0.33 16 32 H 0.09 1.07 7.97 -51.93 -0.41 0.66 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.09 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.77 7.06 -51.93 -0.37 0.40 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -30.44 319.33 -10.67 -41.10 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.75 Total: -0.56 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -4.15 Total: -28.03 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.43 Total: -35.32 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.44 -10.67 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.499 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds