Wall clock time and date at job start Mon Mar 30 2020 01:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48505 * 109.46996 * 269.99612 * 3 2 1 5 5 H 1.48505 * 109.47263 * 29.99462 * 3 2 1 6 6 H 1.48493 * 109.47386 * 149.99981 * 3 2 1 7 7 C 1.37875 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00168 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99922 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47098 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.46956 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47571 * 300.00367 * 11 10 9 13 13 N 1.46898 * 109.47503 * 179.97438 * 12 11 10 14 14 C 1.48711 * 111.10536 * 67.29234 * 13 12 11 15 15 C 1.51542 * 104.20241 * 154.02273 * 14 13 12 16 16 C 1.37987 * 132.18846 * 157.15248 * 15 14 13 17 17 C 1.38284 * 119.93637 * 180.33822 * 16 15 14 18 18 C 1.38265 * 120.04269 * 359.95321 * 17 16 15 19 19 C 1.38285 * 120.03402 * 0.04268 * 18 17 16 20 20 C 1.37986 * 119.93976 * 359.97438 * 19 18 17 21 21 C 1.48918 * 111.00223 * 179.97438 * 13 12 11 22 22 C 1.53001 * 109.47280 * 59.99832 * 12 11 10 23 23 C 1.52994 * 109.47012 * 300.00282 * 9 7 2 24 24 H 0.96995 * 120.00304 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46866 * 60.00734 * 9 7 2 26 26 H 1.09004 * 109.47191 * 60.00309 * 10 9 7 27 27 H 1.08998 * 109.47484 * 300.00461 * 10 9 7 28 28 H 1.09004 * 109.47504 * 179.97438 * 11 10 9 29 29 H 1.09004 * 109.47464 * 60.00678 * 11 10 9 30 30 H 1.09004 * 109.46814 * 299.99839 * 12 11 10 31 31 H 1.09005 * 110.17432 * 35.46821 * 14 13 12 32 32 H 1.08999 * 110.72834 * 272.84692 * 14 13 12 33 33 H 1.07991 * 120.03062 * 0.29623 * 16 15 14 34 34 H 1.08002 * 119.98310 * 179.97438 * 17 16 15 35 35 H 1.07994 * 119.98500 * 180.02562 * 18 17 16 36 36 H 1.07992 * 120.03281 * 179.97438 * 19 18 17 37 37 H 1.08999 * 110.50127 * 87.13466 * 21 13 12 38 38 H 1.08995 * 110.61550 * 324.50376 * 21 13 12 39 39 H 1.08994 * 109.46751 * 59.99996 * 22 12 11 40 40 H 1.09002 * 109.47251 * 180.02562 * 22 12 11 41 41 H 1.08994 * 109.47202 * 299.99649 * 23 9 7 42 42 H 1.09002 * 109.47205 * 60.00208 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0022 12 6 6.0626 -1.9147 -1.2462 13 7 7.5316 -1.9142 -1.2447 14 6 8.0678 -3.2900 -1.4206 15 6 9.4343 -3.0800 -2.0411 16 6 10.5672 -3.8671 -2.0758 17 6 11.7027 -3.4140 -2.7220 18 6 11.7028 -2.1741 -3.3338 19 6 10.5676 -1.3851 -3.2993 20 6 9.4345 -1.8367 -2.6542 21 6 8.0663 -1.2190 -2.4482 22 6 5.5526 -0.4722 -1.2461 23 6 4.0220 -0.4730 -1.2480 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.6586 -3.1502 -0.8893 27 1 3.6579 -3.1506 0.8906 28 1 5.9149 -3.6642 0.0026 29 1 5.9142 -2.1231 0.8928 30 1 5.7000 -2.4283 -2.1367 31 1 7.4266 -3.8603 -2.0930 32 1 8.1586 -3.7946 -0.4587 33 1 10.5672 -4.8356 -1.5981 34 1 12.5899 -4.0292 -2.7493 35 1 12.5900 -1.8213 -3.8385 36 1 10.5679 -0.4165 -3.7767 37 1 8.1548 -0.1486 -2.2630 38 1 7.4294 -1.4044 -3.3131 39 1 5.9151 0.0411 -0.3556 40 1 5.9163 0.0419 -2.1358 41 1 3.6591 -0.9870 -2.1380 42 1 3.6587 0.5547 -1.2483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173333096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:33 Heat of formation + Delta-G solvation = 11.416814 kcal Electronic energy + Delta-G solvation = -20675.901285 eV Core-core repulsion = 17812.378638 eV Total energy + Delta-G solvation = -2863.522647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49842 -39.61663 -37.31598 -34.69388 -32.61476 -32.44022 -31.69342 -29.91334 -28.35476 -26.52927 -24.31324 -23.61588 -22.41376 -21.83214 -21.60330 -20.57825 -18.75821 -17.66098 -16.88442 -16.78965 -16.23564 -16.14441 -15.31478 -15.03755 -14.93330 -14.87023 -14.79845 -14.45595 -14.02824 -13.74524 -13.43867 -13.40457 -13.28093 -12.94833 -12.59629 -12.54416 -12.21679 -12.10788 -12.02062 -11.79970 -11.66966 -11.61575 -11.21584 -10.89007 -10.76938 -10.49746 -9.97070 -9.75719 -9.21895 -8.29297 -6.32164 0.40427 0.47197 1.29537 1.36010 1.46802 2.33038 2.83302 2.86777 3.06513 3.42718 3.56265 3.84731 3.90007 4.12592 4.21549 4.28425 4.36549 4.39107 4.46377 4.49871 4.53577 4.60303 4.65028 4.69394 4.70207 4.74234 4.78123 4.86649 5.01380 5.05346 5.10230 5.15536 5.22678 5.35185 5.40615 5.48716 5.52968 5.60341 5.60927 5.71139 5.80211 5.84339 6.01329 6.09486 6.34035 6.75834 7.33511 8.87861 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.041158 B = 0.004004 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.135265 B = 6992.014400 C = 7504.627566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.301 1.301 6 H -0.247 1.247 7 C -0.517 4.517 8 H 0.032 0.968 9 C 0.012 3.988 10 C -0.093 4.093 11 C -0.098 4.098 12 C 0.086 3.914 13 N -0.501 5.501 14 C 0.072 3.928 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.117 4.117 21 C 0.070 3.930 22 C -0.105 4.105 23 C -0.115 4.115 24 H 0.264 0.736 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.754 -5.111 -7.014 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.229 1.229 6 H -0.170 1.170 7 C -0.555 4.555 8 H 0.050 0.950 9 C -0.007 4.007 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.023 4.023 13 N -0.225 5.225 14 C -0.055 4.055 15 C -0.117 4.117 16 C -0.128 4.128 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.057 4.057 22 C -0.143 4.143 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 25.745 -4.757 -6.475 26.969 hybrid contribution -1.049 0.466 -0.664 1.326 sum 24.696 -4.291 -7.138 26.063 Atomic orbital electron populations 1.70058 1.08237 1.27912 1.53217 1.25904 0.95402 1.03051 0.94395 0.85819 0.79144 0.78703 0.78628 1.19265 1.22901 1.17043 1.21472 0.91878 0.92793 1.49395 0.94974 1.19130 0.93021 0.94584 0.93916 1.21326 0.94470 0.96632 1.00648 1.21479 0.94554 1.00204 0.97342 1.21761 0.86089 0.96409 0.98010 1.66211 1.08136 1.11042 1.37065 1.21886 0.91588 0.91253 1.00811 1.20797 0.95827 0.95720 0.99338 1.20758 0.91752 1.00248 1.00063 1.21449 0.98450 0.96706 0.97413 1.21439 0.98368 0.94553 0.99690 1.20749 0.91887 1.00887 0.99467 1.20779 0.95703 0.96215 0.99101 1.21899 0.91685 0.99983 0.92158 1.21570 0.94634 0.95964 1.02121 1.21829 0.94694 0.98926 0.99860 0.92676 0.96114 0.93330 0.93046 0.90793 0.91775 0.93747 0.92017 0.88578 0.84434 0.83229 0.83306 0.84699 0.89064 0.92039 0.91924 0.91237 0.92804 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 2 C 0.01 0.52 5.45 84.65 0.46 0.98 16 3 Si 0.95 45.95 24.37 68.60 1.67 47.62 16 4 H -0.27 -12.23 6.87 99.48 0.68 -11.54 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 7 C -0.52 -29.88 9.14 25.60 0.23 -29.64 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 9 C 0.01 0.57 1.69 -11.54 -0.02 0.55 16 10 C -0.09 -3.58 5.14 30.59 0.16 -3.43 16 11 C -0.10 -3.02 5.22 30.59 0.16 -2.86 16 12 C 0.09 2.52 1.65 44.91 0.07 2.59 16 13 N -0.50 -13.20 5.37 -866.28 -4.65 -17.85 16 14 C 0.07 1.64 5.55 85.47 0.47 2.12 16 15 C -0.12 -2.56 6.28 -19.56 -0.12 -2.68 16 16 C -0.11 -1.96 10.04 22.22 0.22 -1.74 16 17 C -0.12 -1.83 10.05 22.29 0.22 -1.60 16 18 C -0.12 -1.86 10.05 22.29 0.22 -1.63 16 19 C -0.11 -2.06 10.04 22.22 0.22 -1.83 16 20 C -0.12 -2.63 6.28 -19.57 -0.12 -2.75 16 21 C 0.07 1.66 5.21 85.43 0.44 2.11 16 22 C -0.11 -3.45 5.10 30.61 0.16 -3.29 16 23 C -0.12 -4.76 4.68 30.61 0.14 -4.61 16 24 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 26 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.94 7.31 -2.39 -0.02 1.92 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.32 7.88 -2.38 -0.02 1.30 16 31 H 0.06 1.38 7.78 -2.38 -0.02 1.36 16 32 H 0.10 2.04 7.97 -2.39 -0.02 2.02 16 33 H 0.14 1.89 8.06 -2.92 -0.02 1.86 16 34 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.09 2.09 7.94 -2.39 -0.02 2.08 16 38 H 0.06 1.44 7.91 -2.39 -0.02 1.42 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 40 H 0.07 2.01 7.06 -2.39 -0.02 1.99 16 41 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.03 1.51 3.27 -2.39 -0.01 1.50 16 Total: -1.00 -67.08 319.33 1.16 -65.92 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.90 Total: 12.49 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 2.93 Total: -47.73 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -4.35 Total: -78.30 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -67.08 1.16 -65.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.335 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds