Wall clock time and date at job start Mon Mar 30 2020 01:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00375 * 2 1 4 4 H 1.48501 * 109.47122 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.46984 * 30.00058 * 3 2 1 6 6 H 1.48503 * 109.47451 * 149.99745 * 3 2 1 7 7 C 1.37876 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99989 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00315 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47538 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00091 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46853 * 180.02562 * 11 10 9 13 13 C 1.38254 * 120.00194 * 90.00097 * 12 11 10 14 14 C 1.38216 * 120.00447 * 179.97438 * 13 12 11 15 15 C 1.38255 * 119.99462 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99816 * 179.97438 * 15 14 13 17 17 C 1.53000 * 117.49681 * 300.00204 * 16 15 14 18 18 C 1.53002 * 60.02940 * 107.47810 * 17 16 15 19 19 C 1.38212 * 120.00064 * 0.25608 * 15 14 13 20 20 C 1.50707 * 119.99790 * 179.72091 * 19 15 14 21 21 C 1.52997 * 117.49717 * 188.74604 * 20 19 15 22 22 C 1.53003 * 117.49761 * 120.08703 * 20 19 15 23 23 C 1.38216 * 120.00058 * 270.02132 * 12 11 10 24 24 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47228 * 59.99844 * 9 7 2 26 26 H 1.09004 * 109.46987 * 300.00537 * 9 7 2 27 27 H 1.00900 * 110.99992 * 303.95288 * 10 9 7 28 28 H 1.08995 * 109.47239 * 60.00314 * 11 10 9 29 29 H 1.09000 * 109.47185 * 299.99808 * 11 10 9 30 30 H 1.08002 * 119.99901 * 0.02562 * 13 12 11 31 31 H 1.07996 * 120.00148 * 180.02562 * 14 13 12 32 32 H 1.08999 * 115.54993 * 154.33397 * 16 15 14 33 33 H 1.09002 * 117.49833 * 214.97915 * 17 16 15 34 34 H 1.09002 * 117.49953 * 359.97438 * 17 16 15 35 35 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 36 36 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 37 37 H 1.08997 * 115.54941 * 334.42072 * 20 19 15 38 38 H 1.08996 * 117.50301 * 359.97438 * 21 20 19 39 39 H 1.08995 * 117.49798 * 145.02230 * 21 20 19 40 40 H 1.08995 * 117.49977 * 214.98063 * 22 20 19 41 41 H 1.08998 * 117.49784 * 359.97438 * 22 20 19 42 42 H 1.08002 * 119.99570 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0009 12 6 5.9338 -4.0521 0.0002 13 6 6.1467 -4.7092 -1.1975 14 6 6.5729 -6.0240 -1.1982 15 6 6.7858 -6.6822 -0.0012 16 6 7.2500 -8.1160 -0.0019 17 6 6.3494 -9.1497 -0.6811 18 6 7.6609 -8.7250 -1.3448 19 6 6.5674 -6.0272 1.1961 20 6 6.7934 -6.7467 2.5008 21 6 6.3421 -6.0438 3.7826 22 6 7.8335 -6.1624 3.4588 23 6 6.1462 -4.7104 1.1968 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.6253 -3.0956 0.7821 28 1 5.8466 -2.1145 0.8909 29 1 5.8465 -2.1143 -0.8890 30 1 5.9808 -4.1948 -2.1325 31 1 6.7396 -6.5371 -2.1338 32 1 7.8000 -8.4325 0.8843 33 1 6.3072 -10.1465 -0.2419 34 1 5.4210 -8.7929 -1.1270 35 1 8.4816 -9.4424 -1.3424 36 1 7.5953 -8.0885 -2.2272 37 1 6.6987 -7.8319 2.4618 38 1 5.8821 -5.0607 3.6823 39 1 5.9508 -6.6665 4.5870 40 1 8.4227 -6.8631 4.0503 41 1 8.3545 -5.2578 3.1452 42 1 5.9792 -4.1973 2.1324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179771419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:10 Heat of formation + Delta-G solvation = 69.641331 kcal Electronic energy + Delta-G solvation = -19828.200424 eV Core-core repulsion = 16967.202581 eV Total energy + Delta-G solvation = -2860.997842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16312 -37.32358 -36.96577 -35.05487 -32.53355 -30.86651 -30.43153 -27.59703 -24.91153 -24.00036 -22.63028 -22.51676 -22.20365 -21.08918 -20.47468 -19.59431 -17.11011 -16.69854 -15.93237 -15.58433 -14.86536 -14.62719 -14.49834 -14.14067 -13.99375 -13.78117 -13.52867 -12.81267 -12.53803 -12.32790 -12.20185 -11.86245 -11.67372 -11.59305 -11.49868 -11.15773 -10.81747 -10.79643 -10.74144 -10.61908 -10.49409 -10.36417 -10.29622 -9.84280 -9.29987 -8.59855 -8.57108 -8.18516 -7.47036 -6.05877 -4.04003 1.40470 1.50435 3.28603 3.35628 3.37804 3.49348 3.74524 4.12373 4.41660 4.44225 4.50720 4.71809 4.75260 4.81951 4.90597 4.96309 5.06638 5.13469 5.24525 5.26317 5.36694 5.41422 5.48431 5.54323 5.64936 5.66133 5.69927 5.85941 5.90570 5.94351 5.96290 6.01474 6.05262 6.20451 6.26478 6.60614 6.72717 6.73750 6.88811 7.00570 7.13864 7.58901 7.87432 8.31229 8.64518 9.02445 9.55719 11.07416 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.003724 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.476194 B = 7517.380465 C = 8085.377901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.674 5.674 11 C 0.092 3.908 12 C -0.067 4.067 13 C -0.098 4.098 14 C -0.120 4.120 15 C -0.055 4.055 16 C -0.112 4.112 17 C -0.171 4.171 18 C -0.179 4.179 19 C -0.048 4.048 20 C -0.113 4.113 21 C -0.177 4.177 22 C -0.172 4.172 23 C -0.113 4.113 24 H 0.264 0.736 25 H -0.016 1.016 26 H 0.023 0.977 27 H 0.337 0.663 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.190 -16.170 2.757 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.304 5.304 11 C -0.037 4.037 12 C -0.067 4.067 13 C -0.117 4.117 14 C -0.138 4.138 15 C -0.055 4.055 16 C -0.130 4.130 17 C -0.208 4.208 18 C -0.216 4.216 19 C -0.048 4.048 20 C -0.131 4.131 21 C -0.214 4.214 22 C -0.209 4.209 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.002 0.998 26 H 0.041 0.959 27 H 0.154 0.846 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.969 -16.088 2.072 24.207 hybrid contribution 0.476 1.222 0.867 1.572 sum 18.445 -14.866 2.939 23.872 Atomic orbital electron populations 1.69902 1.06157 1.26877 1.50954 1.24907 0.94759 0.98943 0.94731 0.86819 0.80238 0.83823 0.78606 1.20117 1.21190 1.19270 1.21052 0.88888 0.94847 1.50630 0.90280 1.20028 0.96714 0.84889 0.94801 1.60531 1.03453 1.16721 1.49708 1.20919 0.91120 0.91182 1.00504 1.19917 0.97572 0.96431 0.92828 1.21006 0.98411 0.94288 0.97967 1.20950 1.00741 0.94856 0.97234 1.18787 1.00599 0.93558 0.92554 1.21000 1.03830 0.91168 0.96995 1.23026 0.95098 0.98803 1.03853 1.23065 0.98636 1.03591 0.96328 1.18772 1.00096 0.93467 0.92462 1.20995 1.04917 0.98682 0.88491 1.23088 0.97230 1.02758 0.98320 1.23017 0.92150 1.03163 1.02556 1.20903 1.00353 0.94034 0.97829 0.92637 0.99798 0.95940 0.84598 0.95458 0.90854 0.85871 0.86208 0.87102 0.88702 0.88446 0.88710 0.88354 0.87041 0.88178 0.88538 0.88739 0.88679 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.99 9.87 -34.44 -0.34 -15.33 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.03 4.51 -4.98 -0.02 4.00 16 10 N -0.67 -14.31 6.48 -116.34 -0.75 -15.06 16 11 C 0.09 1.59 5.81 -4.97 -0.03 1.56 16 12 C -0.07 -1.03 5.39 -104.62 -0.56 -1.60 16 13 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 14 C -0.12 -1.53 9.30 -39.58 -0.37 -1.90 16 15 C -0.05 -0.68 5.61 -104.62 -0.59 -1.26 16 16 C -0.11 -1.10 5.27 -91.73 -0.48 -1.59 16 17 C -0.17 -1.52 10.16 -26.73 -0.27 -1.79 16 18 C -0.18 -1.51 9.86 -26.69 -0.26 -1.77 16 19 C -0.05 -0.61 5.61 -104.62 -0.59 -1.20 16 20 C -0.11 -1.19 5.28 -91.77 -0.48 -1.67 16 21 C -0.18 -1.76 9.86 -26.69 -0.26 -2.02 16 22 C -0.17 -1.59 10.16 -26.69 -0.27 -1.86 16 23 C -0.11 -1.60 8.95 -39.58 -0.35 -1.95 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H -0.02 -0.38 7.20 -51.93 -0.37 -0.76 16 26 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 27 H 0.34 7.06 8.72 -39.29 -0.34 6.71 16 28 H 0.03 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.12 1.29 6.02 -52.49 -0.32 0.98 16 32 H 0.11 1.00 6.86 -51.93 -0.36 0.64 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.82 6.18 -51.93 -0.32 0.50 16 37 H 0.11 1.07 6.85 -51.93 -0.36 0.71 16 38 H 0.10 1.07 6.19 -51.93 -0.32 0.75 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.12 1.61 6.03 -52.49 -0.32 1.29 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -31.05 340.55 -11.37 -42.43 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.48 Total: 5.86 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -5.37 Total: -28.27 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.02 Total: -42.20 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.05 -11.37 -42.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179771419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.069 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds