Wall clock time and date at job start Mon Mar 30 2020 01:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00269 * 2 1 4 4 H 1.48507 * 109.46932 * 274.63482 * 3 2 1 5 5 H 1.48504 * 109.46901 * 34.62991 * 3 2 1 6 6 H 1.48491 * 109.47412 * 154.63224 * 3 2 1 7 7 C 1.38816 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99266 * 31.72643 * 7 2 1 9 9 N 1.36928 * 120.00516 * 211.73417 * 7 2 1 10 10 C 1.46501 * 120.00340 * 222.12361 * 9 7 2 11 11 C 1.50695 * 109.47273 * 86.26304 * 10 9 7 12 12 C 1.38241 * 119.99924 * 273.33895 * 11 10 9 13 13 C 1.38228 * 119.99942 * 179.76411 * 12 11 10 14 14 C 1.38242 * 119.99981 * 0.48579 * 13 12 11 15 15 C 1.38229 * 119.99937 * 359.79293 * 14 13 12 16 16 C 1.38232 * 120.00142 * 93.60804 * 11 10 9 17 17 C 1.46511 * 119.99909 * 42.11755 * 9 7 2 18 18 C 1.52995 * 109.46654 * 87.02191 * 17 9 7 19 19 H 1.08998 * 109.81557 * 304.11301 * 18 17 9 20 20 C 1.52943 * 109.80615 * 64.48857 * 18 17 9 21 21 C 1.50071 * 110.30617 * 168.87608 * 20 18 17 22 22 C 1.29441 * 124.07501 * 343.05759 * 21 20 18 23 23 C 1.50071 * 124.07571 * 0.44631 * 22 21 20 24 24 C 1.53021 * 110.14440 * 342.86720 * 23 22 21 25 25 H 0.97005 * 120.00125 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47000 * 206.26268 * 10 9 7 27 27 H 1.08997 * 109.46540 * 326.26371 * 10 9 7 28 28 H 1.07998 * 120.00050 * 0.02562 * 12 11 10 29 29 H 1.07999 * 119.99953 * 180.24876 * 13 12 11 30 30 H 1.08001 * 119.99921 * 179.76542 * 14 13 12 31 31 H 1.08003 * 120.00085 * 179.97438 * 15 14 13 32 32 H 1.07994 * 120.00127 * 0.02562 * 16 11 10 33 33 H 1.08997 * 109.47039 * 327.02460 * 17 9 7 34 34 H 1.09001 * 109.47073 * 207.01985 * 17 9 7 35 35 H 1.09003 * 109.14793 * 48.71182 * 20 18 17 36 36 H 1.08998 * 109.30433 * 289.15249 * 20 18 17 37 37 H 1.08000 * 117.96356 * 163.03026 * 21 20 18 38 38 H 1.08002 * 117.96124 * 180.46081 * 22 21 20 39 39 H 1.08995 * 109.35458 * 222.66022 * 23 22 21 40 40 H 1.09000 * 109.35559 * 103.07374 * 23 22 21 41 41 H 1.09001 * 109.64486 * 169.12345 * 24 23 22 42 42 H 1.09004 * 109.64420 * 289.53768 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3998 2.1029 -1.3956 5 1 1.5000 2.6224 0.7957 6 1 3.5932 1.4139 0.5998 7 6 2.0103 -1.2022 0.0005 8 1 1.5912 -2.0677 -0.4910 9 7 3.2260 -1.2906 0.6243 10 6 4.3250 -2.0203 -0.0130 11 6 5.0644 -1.0986 -0.9482 12 6 4.6310 -0.9435 -2.2517 13 6 5.3064 -0.0944 -3.1082 14 6 6.4212 0.5921 -2.6641 15 6 6.8579 0.4326 -1.3623 16 6 6.1793 -0.4125 -0.5042 17 6 3.4279 -0.6553 1.9289 18 6 3.0031 -1.6206 3.0373 19 1 1.9712 -1.9339 2.8790 20 6 3.9144 -2.8489 3.0322 21 6 3.6893 -3.6695 4.2683 22 6 3.0930 -3.2320 5.3306 23 6 2.5349 -1.8460 5.4711 24 6 3.1282 -0.9280 4.4002 25 1 -0.4850 0.8401 0.0004 26 1 5.0093 -2.3872 0.7520 27 1 3.9233 -2.8631 -0.5756 28 1 3.7623 -1.4826 -2.5997 29 1 4.9655 0.0299 -4.1254 30 1 6.9511 1.2526 -3.3343 31 1 7.7290 0.9685 -1.0155 32 1 6.5207 -0.5373 0.5127 33 1 2.8275 0.2525 1.9878 34 1 4.4812 -0.4028 2.0510 35 1 4.9539 -2.5227 2.9995 36 1 3.6980 -3.4544 2.1521 37 1 4.0467 -4.6886 4.2716 38 1 2.9910 -3.9063 6.1681 39 1 2.7813 -1.4557 6.4585 40 1 1.4513 -1.8797 5.3582 41 1 2.5827 0.0156 4.3832 42 1 4.1790 -0.7395 4.6204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201423647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:04 Heat of formation + Delta-G solvation = 46.965512 kcal Electronic energy + Delta-G solvation = -21193.781385 eV Core-core repulsion = 18331.800245 eV Total energy + Delta-G solvation = -2861.981140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.84343 -38.21012 -35.54472 -32.03035 -31.69237 -30.40420 -30.32521 -29.69939 -26.10488 -25.25611 -22.85454 -21.96552 -21.84974 -20.64607 -19.92654 -17.41638 -16.73647 -16.26640 -15.54975 -15.06262 -14.63470 -14.47867 -14.20912 -13.86165 -13.22885 -13.03112 -12.98750 -12.84073 -12.47584 -12.22819 -12.16945 -11.92854 -11.82795 -11.67048 -11.09778 -10.81800 -10.65390 -10.52861 -10.45427 -10.24960 -9.94251 -9.80401 -9.63664 -9.38404 -8.64251 -8.46146 -8.35901 -8.12118 -6.73128 -6.09238 -3.42024 1.94223 1.97631 2.61044 3.38724 3.51026 3.60263 4.33775 4.56460 4.98879 5.10883 5.21265 5.32912 5.38185 5.42875 5.52791 5.56222 5.68501 5.73039 5.74443 5.85098 5.98549 6.02118 6.09118 6.10677 6.23903 6.24777 6.30165 6.39075 6.45877 6.49122 6.62945 6.63998 6.68723 6.69980 6.91127 6.99663 7.05920 7.08627 7.20618 7.29616 7.34749 7.60422 8.03918 8.40710 9.00546 9.69928 10.15922 11.05937 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.007101 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.576817 B = 3942.087882 C = 4825.521812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.055 3.945 3 Si 0.848 3.152 4 H -0.290 1.290 5 H -0.298 1.298 6 H -0.258 1.258 7 C -0.272 4.272 8 H 0.074 0.926 9 N -0.589 5.589 10 C 0.174 3.826 11 C -0.081 4.081 12 C -0.098 4.098 13 C -0.126 4.126 14 C -0.142 4.142 15 C -0.130 4.130 16 C -0.121 4.121 17 C 0.160 3.840 18 C -0.103 4.103 19 H 0.081 0.919 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.166 4.166 23 C -0.087 4.087 24 C -0.115 4.115 25 H 0.263 0.737 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.481 -2.928 4.235 11.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.148 4.148 3 Si 0.675 3.325 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.182 1.182 7 C -0.400 4.400 8 H 0.091 0.909 9 N -0.309 5.309 10 C 0.048 3.952 11 C -0.084 4.084 12 C -0.117 4.117 13 C -0.144 4.144 14 C -0.160 4.160 15 C -0.148 4.148 16 C -0.140 4.140 17 C 0.034 3.966 18 C -0.124 4.124 19 H 0.099 0.901 20 C -0.115 4.115 21 C -0.165 4.165 22 C -0.184 4.184 23 C -0.124 4.124 24 C -0.154 4.154 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.276 -2.868 4.256 11.487 hybrid contribution 0.351 1.243 -0.116 1.297 sum 10.627 -1.625 4.140 11.520 Atomic orbital electron populations 1.70020 1.06376 1.26934 1.48524 1.25549 0.94692 0.97651 0.96931 0.87305 0.81928 0.85412 0.77856 1.21724 1.22475 1.18246 1.18579 0.92165 0.94952 1.34298 0.90863 1.44163 1.08230 1.63307 1.15166 1.20175 0.89378 0.92708 0.92891 1.21079 0.93546 0.98973 0.94850 1.21089 0.98735 0.98416 0.93490 1.21105 0.96123 0.97656 0.99546 1.20932 0.97992 1.00983 0.96124 1.20983 1.00101 0.99426 0.94257 1.20975 0.96234 0.97889 0.98900 1.21112 0.97169 0.93994 0.84277 1.21762 1.00991 0.95687 0.93910 0.90084 1.20454 0.99042 0.96488 0.95538 1.22186 0.99502 0.99139 0.95639 1.21972 1.00957 0.97470 0.97993 1.20397 1.00295 0.93037 0.98654 1.21624 1.00211 0.98265 0.95268 0.92736 0.92989 0.92485 0.85972 0.86979 0.87232 0.87209 0.87114 0.93356 0.94698 0.92037 0.90549 0.88853 0.88914 0.92044 0.91106 0.92076 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16 2 C 0.05 1.53 5.08 -17.43 -0.09 1.44 16 3 Si 0.85 21.85 26.38 -169.99 -4.48 17.36 16 4 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.26 -6.44 5.98 56.52 0.34 -6.10 16 7 C -0.27 -7.16 9.74 -15.06 -0.15 -7.30 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 9 N -0.59 -13.03 1.76 -174.61 -0.31 -13.33 16 10 C 0.17 3.30 4.93 -5.20 -0.03 3.28 16 11 C -0.08 -1.54 5.44 -104.63 -0.57 -2.11 16 12 C -0.10 -1.87 9.72 -39.58 -0.38 -2.26 16 13 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 14 C -0.14 -2.28 10.05 -39.58 -0.40 -2.68 16 15 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 16 C -0.12 -2.12 9.69 -39.58 -0.38 -2.50 16 17 C 0.16 3.31 3.66 -4.04 -0.01 3.30 16 18 C -0.10 -1.88 2.45 -90.45 -0.22 -2.10 16 19 H 0.08 1.74 8.13 -51.93 -0.42 1.32 16 20 C -0.08 -1.25 4.12 -28.22 -0.12 -1.37 16 21 C -0.15 -2.11 9.81 -35.90 -0.35 -2.46 16 22 C -0.17 -2.30 9.80 -35.90 -0.35 -2.65 16 23 C -0.09 -1.22 6.12 -28.18 -0.17 -1.39 16 24 C -0.12 -1.82 5.30 -26.52 -0.14 -1.96 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.05 0.87 6.45 -51.93 -0.33 0.54 16 27 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 28 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.05 1.12 4.68 -51.93 -0.24 0.87 16 34 H 0.03 0.67 8.02 -51.93 -0.42 0.26 16 35 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 36 H 0.08 1.29 7.17 -51.93 -0.37 0.92 16 37 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.09 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -29.02 333.93 -10.03 -39.05 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.88 Total: 2.97 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -4.16 Total: -25.82 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.47 Total: -38.60 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.48 Total: 17.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.02 -10.03 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201423647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.019 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds