Wall clock time and date at job start Mon Mar 30 2020 01:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00269 * 2 1 4 4 H 1.48507 * 109.46932 * 274.63482 * 3 2 1 5 5 H 1.48504 * 109.46901 * 34.62991 * 3 2 1 6 6 H 1.48491 * 109.47412 * 154.63224 * 3 2 1 7 7 C 1.38816 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99266 * 31.72643 * 7 2 1 9 9 N 1.36928 * 120.00516 * 211.73417 * 7 2 1 10 10 C 1.46501 * 120.00340 * 222.12361 * 9 7 2 11 11 C 1.50695 * 109.47273 * 86.26304 * 10 9 7 12 12 C 1.38241 * 119.99924 * 273.33895 * 11 10 9 13 13 C 1.38228 * 119.99942 * 179.76411 * 12 11 10 14 14 C 1.38242 * 119.99981 * 0.48579 * 13 12 11 15 15 C 1.38229 * 119.99937 * 359.79293 * 14 13 12 16 16 C 1.38232 * 120.00142 * 93.60804 * 11 10 9 17 17 C 1.46511 * 119.99909 * 42.11755 * 9 7 2 18 18 C 1.52995 * 109.46654 * 87.02191 * 17 9 7 19 19 H 1.08998 * 109.81557 * 304.11301 * 18 17 9 20 20 C 1.52943 * 109.80615 * 64.48857 * 18 17 9 21 21 C 1.50071 * 110.30617 * 168.87608 * 20 18 17 22 22 C 1.29441 * 124.07501 * 343.05759 * 21 20 18 23 23 C 1.50071 * 124.07571 * 0.44631 * 22 21 20 24 24 C 1.53021 * 110.14440 * 342.86720 * 23 22 21 25 25 H 0.97005 * 120.00125 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47000 * 206.26268 * 10 9 7 27 27 H 1.08997 * 109.46540 * 326.26371 * 10 9 7 28 28 H 1.07998 * 120.00050 * 0.02562 * 12 11 10 29 29 H 1.07999 * 119.99953 * 180.24876 * 13 12 11 30 30 H 1.08001 * 119.99921 * 179.76542 * 14 13 12 31 31 H 1.08003 * 120.00085 * 179.97438 * 15 14 13 32 32 H 1.07994 * 120.00127 * 0.02562 * 16 11 10 33 33 H 1.08997 * 109.47039 * 327.02460 * 17 9 7 34 34 H 1.09001 * 109.47073 * 207.01985 * 17 9 7 35 35 H 1.09003 * 109.14793 * 48.71182 * 20 18 17 36 36 H 1.08998 * 109.30433 * 289.15249 * 20 18 17 37 37 H 1.08000 * 117.96356 * 163.03026 * 21 20 18 38 38 H 1.08002 * 117.96124 * 180.46081 * 22 21 20 39 39 H 1.08995 * 109.35458 * 222.66022 * 23 22 21 40 40 H 1.09000 * 109.35559 * 103.07374 * 23 22 21 41 41 H 1.09001 * 109.64486 * 169.12345 * 24 23 22 42 42 H 1.09004 * 109.64420 * 289.53768 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3998 2.1029 -1.3956 5 1 1.5000 2.6224 0.7957 6 1 3.5932 1.4139 0.5998 7 6 2.0103 -1.2022 0.0005 8 1 1.5912 -2.0677 -0.4910 9 7 3.2260 -1.2906 0.6243 10 6 4.3250 -2.0203 -0.0130 11 6 5.0644 -1.0986 -0.9482 12 6 4.6310 -0.9435 -2.2517 13 6 5.3064 -0.0944 -3.1082 14 6 6.4212 0.5921 -2.6641 15 6 6.8579 0.4326 -1.3623 16 6 6.1793 -0.4125 -0.5042 17 6 3.4279 -0.6553 1.9289 18 6 3.0031 -1.6206 3.0373 19 1 1.9712 -1.9339 2.8790 20 6 3.9144 -2.8489 3.0322 21 6 3.6893 -3.6695 4.2683 22 6 3.0930 -3.2320 5.3306 23 6 2.5349 -1.8460 5.4711 24 6 3.1282 -0.9280 4.4002 25 1 -0.4850 0.8401 0.0004 26 1 5.0093 -2.3872 0.7520 27 1 3.9233 -2.8631 -0.5756 28 1 3.7623 -1.4826 -2.5997 29 1 4.9655 0.0299 -4.1254 30 1 6.9511 1.2526 -3.3343 31 1 7.7290 0.9685 -1.0155 32 1 6.5207 -0.5373 0.5127 33 1 2.8275 0.2525 1.9878 34 1 4.4812 -0.4028 2.0510 35 1 4.9539 -2.5227 2.9995 36 1 3.6980 -3.4544 2.1521 37 1 4.0467 -4.6886 4.2716 38 1 2.9910 -3.9063 6.1681 39 1 2.7813 -1.4557 6.4585 40 1 1.4513 -1.8797 5.3582 41 1 2.5827 0.0156 4.3832 42 1 4.1790 -0.7395 4.6204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201423647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:04 Heat of formation + Delta-G solvation = 34.109172 kcal Electronic energy + Delta-G solvation = -21194.338877 eV Core-core repulsion = 18331.800245 eV Total energy + Delta-G solvation = -2862.538632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24499 -39.50721 -37.15927 -34.01286 -33.07163 -31.66085 -31.62954 -31.20039 -27.62135 -27.04236 -24.18711 -23.41972 -23.25324 -22.04011 -21.51401 -18.70610 -18.62552 -17.60799 -16.95775 -16.74577 -16.14833 -15.89388 -15.73673 -15.20421 -14.90413 -14.70880 -14.34851 -14.15817 -13.96685 -13.80255 -13.52935 -13.38796 -13.17651 -13.00687 -12.84670 -12.53387 -12.29194 -12.09359 -11.97497 -11.69322 -11.56870 -11.38599 -11.14317 -10.88192 -10.56144 -9.75929 -9.69365 -9.51176 -8.61191 -8.26189 -5.53257 0.60036 0.63218 1.29440 1.39919 1.49900 1.51816 2.43312 2.95500 3.01542 3.63019 3.92966 3.98119 4.08650 4.15255 4.20133 4.28374 4.38754 4.41528 4.54468 4.57465 4.62664 4.68984 4.76894 4.80716 4.86500 4.90931 5.01580 5.05880 5.12878 5.15722 5.19406 5.28264 5.29872 5.30990 5.52571 5.67813 5.69172 5.71602 5.89442 5.90999 6.01094 6.17851 6.23583 6.28314 7.06646 7.67761 8.14517 8.94308 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.007101 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.576817 B = 3942.087882 C = 4825.521812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.304 1.304 5 H -0.304 1.304 6 H -0.241 1.241 7 C -0.246 4.246 8 H 0.037 0.963 9 N -0.596 5.596 10 C 0.178 3.822 11 C -0.101 4.101 12 C -0.124 4.124 13 C -0.137 4.137 14 C -0.139 4.139 15 C -0.129 4.129 16 C -0.128 4.128 17 C 0.158 3.842 18 C -0.097 4.097 19 H 0.037 0.963 20 C -0.072 4.072 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.088 4.088 24 C -0.113 4.113 25 H 0.261 0.739 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.021 0.979 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.906 -2.437 5.587 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.232 1.232 5 H -0.231 1.231 6 H -0.165 1.165 7 C -0.376 4.376 8 H 0.055 0.945 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.104 4.104 12 C -0.143 4.143 13 C -0.155 4.155 14 C -0.158 4.158 15 C -0.147 4.147 16 C -0.146 4.146 17 C 0.033 3.967 18 C -0.118 4.118 19 H 0.056 0.944 20 C -0.109 4.109 21 C -0.178 4.178 22 C -0.182 4.182 23 C -0.125 4.125 24 C -0.151 4.151 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.147 0.853 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.753 -2.386 5.616 15.046 hybrid contribution -0.638 0.998 -0.588 1.323 sum 13.114 -1.388 5.028 14.114 Atomic orbital electron populations 1.70111 1.07747 1.27215 1.52079 1.25949 0.95002 1.00043 0.98169 0.86407 0.81540 0.82224 0.76677 1.23247 1.23121 1.16457 1.18388 0.93599 0.93359 1.32299 0.94525 1.44158 1.07990 1.63493 1.16037 1.20163 0.88794 0.92084 0.93615 1.21024 0.94918 0.99652 0.94807 1.21144 0.99003 0.99654 0.94467 1.21385 0.96583 0.97362 1.00212 1.21371 0.97183 1.00379 0.96827 1.21420 1.00656 0.98661 0.93958 1.21248 0.95619 0.97629 1.00153 1.21168 0.97912 0.93458 0.84145 1.21583 0.98931 0.96543 0.94744 0.94431 1.20345 0.99168 0.95314 0.96055 1.22248 1.00628 0.99935 0.94962 1.22190 0.99884 0.97530 0.98605 1.20430 0.99582 0.93195 0.99315 1.21607 1.01416 0.97974 0.94148 0.93032 0.90242 0.93496 0.87848 0.85341 0.84003 0.83818 0.85207 0.96055 0.92387 0.90425 0.92148 0.86896 0.86517 0.89418 0.92180 0.92986 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.97 21.65 0.30 -57.36 16 2 C 0.01 0.40 5.08 84.86 0.43 0.83 16 3 Si 0.90 46.38 26.38 68.60 1.81 48.19 16 4 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 5 H -0.30 -15.72 7.11 99.48 0.71 -15.02 16 6 H -0.24 -11.54 5.98 99.48 0.59 -10.95 16 7 C -0.25 -13.54 9.74 84.04 0.82 -12.72 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 N -0.60 -26.62 1.76 -706.34 -1.24 -27.86 16 10 C 0.18 6.69 4.93 85.63 0.42 7.12 16 11 C -0.10 -3.73 5.44 -19.87 -0.11 -3.83 16 12 C -0.12 -4.70 9.72 22.27 0.22 -4.48 16 13 C -0.14 -4.50 10.05 22.27 0.22 -4.28 16 14 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16 15 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 16 C -0.13 -4.05 9.69 22.27 0.22 -3.84 16 17 C 0.16 6.43 3.66 86.38 0.32 6.75 16 18 C -0.10 -3.52 2.45 -10.68 -0.03 -3.55 16 19 H 0.04 1.67 8.13 -2.39 -0.02 1.65 16 20 C -0.07 -2.18 4.12 29.63 0.12 -2.06 16 21 C -0.16 -4.22 9.81 27.04 0.27 -3.95 16 22 C -0.16 -4.10 9.80 27.04 0.27 -3.83 16 23 C -0.09 -2.29 6.12 29.66 0.18 -2.11 16 24 C -0.11 -3.39 5.30 30.73 0.16 -3.22 16 25 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 26 H 0.08 2.52 6.45 -2.39 -0.02 2.50 16 27 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 28 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.02 0.98 4.68 -2.39 -0.01 0.97 16 34 H 0.06 2.08 8.02 -2.39 -0.02 2.06 16 35 H 0.08 2.09 7.83 -2.39 -0.02 2.08 16 36 H 0.06 2.01 7.17 -2.39 -0.02 1.99 16 37 H 0.11 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 Total: -1.00 -65.11 333.93 5.68 -59.43 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.85 Total: 17.94 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.95 Total: -40.34 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -0.94 Total: -85.22 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.81 Total: 48.19 kcal Total: -65.11 5.68 -59.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201423647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.539 kcal (2) G-P(sol) polarization free energy of solvation -65.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds