Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48499 * 109.47169 * 275.32309 * 3 2 1 5 5 H 1.48490 * 109.47204 * 35.32465 * 3 2 1 6 6 H 1.48503 * 109.47039 * 155.32785 * 3 2 1 7 7 C 1.38811 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00001 * 336.30552 * 7 2 1 9 9 N 1.36936 * 120.00034 * 156.30963 * 7 2 1 10 10 C 1.46499 * 120.00051 * 140.45681 * 9 7 2 11 11 C 1.50696 * 109.47397 * 270.00279 * 10 9 7 12 12 C 1.38242 * 120.00200 * 90.00069 * 11 10 9 13 13 C 1.38235 * 120.00126 * 179.97438 * 12 11 10 14 14 C 1.38234 * 119.99718 * 359.97438 * 13 12 11 15 15 C 1.38241 * 120.00417 * 0.06758 * 14 13 12 16 16 C 1.38230 * 119.99633 * 359.89372 * 15 14 13 17 17 C 1.46497 * 120.00195 * 320.45994 * 9 7 2 18 18 C 1.52995 * 109.47028 * 272.57842 * 17 9 7 19 19 H 1.08996 * 109.64264 * 55.41991 * 18 17 9 20 20 C 1.53021 * 109.64213 * 294.99407 * 18 17 9 21 21 C 1.50067 * 110.15101 * 190.87847 * 20 18 17 22 22 C 1.29447 * 124.07168 * 17.13623 * 21 20 18 23 23 C 1.50067 * 124.07785 * 359.50438 * 22 21 20 24 24 C 1.53040 * 110.13752 * 17.17145 * 23 22 21 25 25 H 0.96997 * 120.00136 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47163 * 149.99939 * 10 9 7 27 27 H 1.09005 * 109.47128 * 30.00417 * 10 9 7 28 28 H 1.07996 * 119.99538 * 359.97438 * 12 11 10 29 29 H 1.07994 * 119.99978 * 179.72258 * 13 12 11 30 30 H 1.08000 * 119.99657 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.99948 * 179.97438 * 15 14 13 32 32 H 1.08000 * 119.99735 * 180.11037 * 16 15 14 33 33 H 1.09010 * 109.46729 * 32.57336 * 17 9 7 34 34 H 1.08994 * 109.47146 * 152.57185 * 17 9 7 35 35 H 1.08993 * 109.35952 * 311.09140 * 20 18 17 36 36 H 1.08999 * 109.35591 * 70.81279 * 20 18 17 37 37 H 1.07998 * 117.96583 * 197.15391 * 21 20 18 38 38 H 1.08004 * 117.95948 * 179.53313 * 22 21 20 39 39 H 1.08997 * 109.35937 * 137.36532 * 23 22 21 40 40 H 1.09004 * 109.35693 * 257.08572 * 23 22 21 41 41 H 1.09003 * 109.63385 * 190.86395 * 24 23 22 42 42 H 1.08994 * 109.66103 * 70.22242 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3852 2.1113 -1.3940 5 1 1.5085 2.6175 0.8095 6 1 3.5995 1.4102 0.5844 7 6 2.0102 -1.2022 -0.0005 8 1 1.5384 -2.0982 0.3749 9 7 3.2930 -1.2520 -0.4770 10 6 4.2960 -2.0746 0.2039 11 6 4.9881 -1.2515 1.2595 12 6 4.4838 -1.2118 2.5461 13 6 5.1191 -0.4572 3.5145 14 6 6.2589 0.2573 3.1966 15 6 6.7628 0.2183 1.9099 16 6 6.1280 -0.5369 0.9417 17 6 3.6626 -0.4827 -1.6677 18 6 3.3772 -1.3134 -2.9204 19 1 2.3335 -1.6276 -2.9218 20 6 4.2853 -2.5449 -2.9389 21 6 4.2092 -3.2234 -4.2753 22 6 3.7450 -2.6648 -5.3468 23 6 3.2083 -1.2644 -5.4000 24 6 3.6698 -0.4762 -4.1721 25 1 -0.4850 0.8400 0.0004 26 1 5.0297 -2.4272 -0.5210 27 1 3.8078 -2.9295 0.6719 28 1 3.5935 -1.7703 2.7945 29 1 4.7225 -0.4226 4.5184 30 1 6.7550 0.8472 3.9531 31 1 7.6531 0.7769 1.6615 32 1 6.5227 -0.5688 -0.0631 33 1 3.0791 0.4375 -1.7013 34 1 4.7241 -0.2386 -1.6276 35 1 5.3135 -2.2385 -2.7472 36 1 3.9654 -3.2413 -2.1637 37 1 4.5635 -4.2411 -4.3475 38 1 3.7436 -3.2427 -6.2592 39 1 3.5713 -0.7724 -6.3024 40 1 2.1189 -1.2955 -5.4189 41 1 3.1266 0.4672 -4.1170 42 1 4.7402 -0.2827 -4.2415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201423650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = 34.769229 kcal Electronic energy + Delta-G solvation = -21214.273772 eV Core-core repulsion = 18351.763762 eV Total energy + Delta-G solvation = -2862.510010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27684 -39.52420 -37.20354 -33.99565 -33.08607 -31.65778 -31.64947 -31.23184 -27.67890 -27.04909 -24.20372 -23.43799 -23.26960 -22.08255 -21.52477 -18.70809 -18.67094 -17.61834 -17.11771 -16.78205 -16.16943 -15.90165 -15.74270 -15.20911 -14.90323 -14.73872 -14.37047 -14.15490 -13.96154 -13.79830 -13.56538 -13.38914 -13.20025 -13.03665 -12.85329 -12.55303 -12.30400 -12.03357 -11.99980 -11.70070 -11.62534 -11.42815 -11.14773 -10.93617 -10.58644 -9.77102 -9.69171 -9.50584 -8.69403 -8.20763 -5.55445 0.60279 0.63329 1.25734 1.37799 1.50735 1.51284 2.41524 2.95001 3.07106 3.57648 3.90245 3.94857 4.07437 4.13044 4.19362 4.28003 4.36807 4.37765 4.52616 4.54932 4.60763 4.65216 4.76569 4.77499 4.83736 4.90400 4.95073 5.02974 5.08176 5.13045 5.15807 5.27287 5.29407 5.29767 5.48928 5.64818 5.68580 5.71238 5.88340 5.90135 6.01711 6.16660 6.19922 6.28241 7.02686 7.65406 8.08923 8.99214 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.007248 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.351358 B = 3862.470602 C = 4759.504103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.008 4.008 3 Si 0.927 3.073 4 H -0.279 1.279 5 H -0.317 1.317 6 H -0.258 1.258 7 C -0.239 4.239 8 H 0.042 0.958 9 N -0.599 5.599 10 C 0.179 3.821 11 C -0.102 4.102 12 C -0.125 4.125 13 C -0.135 4.135 14 C -0.139 4.139 15 C -0.130 4.130 16 C -0.129 4.129 17 C 0.144 3.856 18 C -0.097 4.097 19 H 0.038 0.962 20 C -0.072 4.072 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.088 4.088 24 C -0.114 4.114 25 H 0.260 0.740 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.023 0.977 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.872 -2.044 -4.437 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.204 4.204 3 Si 0.757 3.243 4 H -0.206 1.206 5 H -0.246 1.246 6 H -0.182 1.182 7 C -0.369 4.369 8 H 0.059 0.941 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.104 4.104 12 C -0.144 4.144 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.147 4.147 16 C -0.147 4.147 17 C 0.020 3.980 18 C -0.117 4.117 19 H 0.057 0.943 20 C -0.109 4.109 21 C -0.177 4.177 22 C -0.182 4.182 23 C -0.125 4.125 24 C -0.153 4.153 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.123 0.877 29 H 0.149 0.851 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.732 -1.993 -4.449 15.517 hybrid contribution -0.685 0.934 0.386 1.221 sum 14.047 -1.058 -4.062 14.661 Atomic orbital electron populations 1.69998 1.07542 1.27050 1.54325 1.25946 0.95317 1.00339 0.98846 0.86091 0.79955 0.81384 0.76905 1.20634 1.24629 1.18211 1.18544 0.88313 0.92616 1.37419 0.94071 1.44181 1.06192 1.55202 1.26384 1.20160 0.90602 0.91839 0.91971 1.21026 0.94788 0.99265 0.95358 1.21164 0.99108 1.00242 0.93907 1.21381 0.96573 0.97625 0.99710 1.21376 0.96802 1.00100 0.97433 1.21422 1.00732 0.99177 0.93415 1.21235 0.95752 0.97836 0.99926 1.21227 0.97753 0.93075 0.85972 1.21580 0.98911 0.96490 0.94768 0.94289 1.20377 0.99235 0.95994 0.95312 1.22254 1.00956 1.00022 0.94514 1.22186 1.00373 0.96980 0.98651 1.20438 1.00071 0.93748 0.98267 1.21627 1.01562 0.97787 0.94276 0.93115 0.90200 0.93236 0.87729 0.85088 0.83955 0.83897 0.85310 0.95852 0.92017 0.90269 0.92008 0.86797 0.86448 0.89372 0.92169 0.93249 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.97 21.65 0.30 -59.06 16 2 C -0.01 -0.45 5.28 84.86 0.45 0.00 16 3 Si 0.93 47.47 25.24 68.60 1.73 49.20 16 4 H -0.28 -13.72 6.66 99.48 0.66 -13.05 16 5 H -0.32 -16.76 7.11 99.48 0.71 -16.06 16 6 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.24 -13.23 9.87 84.03 0.83 -12.40 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 9 N -0.60 -26.88 1.84 -706.35 -1.30 -28.18 16 10 C 0.18 6.75 5.01 85.63 0.43 7.17 16 11 C -0.10 -3.74 5.46 -19.86 -0.11 -3.85 16 12 C -0.13 -4.70 9.70 22.27 0.22 -4.48 16 13 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 14 C -0.14 -3.92 10.05 22.27 0.22 -3.69 16 15 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 16 C -0.13 -4.11 9.70 22.27 0.22 -3.89 16 17 C 0.14 5.90 4.08 86.38 0.35 6.25 16 18 C -0.10 -3.51 2.45 -10.65 -0.03 -3.53 16 19 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 20 C -0.07 -2.18 4.09 29.66 0.12 -2.06 16 21 C -0.16 -4.17 9.80 27.03 0.27 -3.90 16 22 C -0.16 -4.06 9.80 27.03 0.27 -3.80 16 23 C -0.09 -2.30 6.12 29.66 0.18 -2.12 16 24 C -0.11 -3.45 5.31 30.74 0.16 -3.29 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.08 2.53 6.27 -2.39 -0.01 2.52 16 27 H 0.05 1.93 7.98 -2.38 -0.02 1.91 16 28 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.02 1.09 3.52 -2.38 -0.01 1.08 16 34 H 0.06 2.21 8.02 -2.39 -0.02 2.19 16 35 H 0.08 2.11 7.87 -2.39 -0.02 2.09 16 36 H 0.06 2.03 7.06 -2.39 -0.02 2.01 16 37 H 0.11 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 Total: -1.00 -66.10 332.91 5.68 -60.41 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.92 Total: 18.73 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 4.02 Total: -41.11 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -1.00 Total: -87.24 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.73 Total: 49.20 kcal Total: -66.10 5.68 -60.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201423650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.183 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds