Wall clock time and date at job start Mon Mar 30 2020 01:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.80059 * 2 1 4 4 C 1.53023 * 109.63291 * 120.50379 * 2 1 3 5 5 C 1.50083 * 110.02725 * 169.24041 * 4 2 1 6 6 C 1.30622 * 123.91647 * 342.89556 * 5 4 2 7 7 N 1.38807 * 118.04074 * 180.46742 * 6 5 4 8 8 C 1.38656 * 120.00041 * 119.74931 * 7 6 5 9 9 C 1.38827 * 120.30173 * 352.82148 * 8 7 6 10 10 C 1.38105 * 120.01962 * 179.72073 * 9 8 7 11 11 C 1.38933 * 120.63733 * 0.55927 * 10 9 8 12 12 C 1.36416 * 120.60919 * 359.72068 * 11 10 9 13 13 C 1.40749 * 119.95432 * 359.97438 * 12 11 10 14 14 C 1.41007 * 120.31234 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99814 * 207.54037 * 14 13 12 16 16 C 1.39901 * 119.99855 * 27.53826 * 14 13 12 17 17 N 1.30898 * 120.00208 * 12.76342 * 16 14 13 18 18 Si 1.86803 * 119.99963 * 192.75854 * 16 14 13 19 19 H 1.48503 * 109.46757 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46844 * 119.99774 * 18 16 14 21 21 H 1.48494 * 109.47141 * 240.00486 * 18 16 14 22 22 C 1.50079 * 123.91796 * 0.43612 * 6 5 4 23 23 C 1.53013 * 110.14195 * 342.87936 * 22 6 5 24 24 H 1.08998 * 109.46949 * 299.49052 * 1 2 3 25 25 H 1.08997 * 109.47017 * 59.49656 * 1 2 3 26 26 H 1.09001 * 109.46587 * 179.49595 * 1 2 3 27 27 H 1.08993 * 109.47491 * 180.50684 * 3 2 1 28 28 H 1.09009 * 109.46531 * 300.50774 * 3 2 1 29 29 H 1.09000 * 109.47269 * 60.50510 * 3 2 1 30 30 H 1.09000 * 109.35661 * 49.10894 * 4 2 1 31 31 H 1.08998 * 109.35965 * 289.37314 * 4 2 1 32 32 H 1.07995 * 118.04001 * 162.91833 * 5 4 2 33 33 H 0.97000 * 119.99929 * 299.75107 * 7 6 5 34 34 H 1.07999 * 119.98993 * 359.97438 * 9 8 7 35 35 H 1.08005 * 119.68073 * 180.27759 * 10 9 8 36 36 H 1.08001 * 119.69746 * 179.73742 * 11 10 9 37 37 H 1.07999 * 120.02464 * 180.02562 * 12 11 10 38 38 H 0.96996 * 119.99937 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.35454 * 103.08168 * 22 6 5 40 40 H 1.08994 * 109.36148 * 222.66519 * 22 6 5 41 41 H 1.08997 * 109.63522 * 169.30362 * 23 22 6 42 42 H 1.09003 * 109.63204 * 289.70341 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0483 1.4395 0.0000 4 6 2.0442 -0.7316 1.2418 5 6 3.5216 -0.9679 1.1242 6 6 4.1843 -0.8949 0.0010 7 7 5.5490 -1.1466 0.0310 8 6 6.0784 -2.1886 -0.7150 9 6 5.2381 -3.0750 -1.3751 10 6 5.7718 -4.1074 -2.1212 11 6 7.1476 -4.2785 -2.2110 12 6 7.9969 -3.4262 -1.5683 13 6 7.4806 -2.3615 -0.8061 14 6 8.3516 -1.4757 -0.1391 15 1 8.0244 -0.9689 0.7567 16 6 9.6397 -1.2534 -0.6377 17 7 9.9549 -1.6603 -1.8413 18 14 10.9098 -0.3757 0.4140 19 1 10.3076 -0.0208 1.7242 20 1 12.0755 -1.2697 0.6314 21 1 11.3560 0.8605 -0.2773 22 6 3.5583 -0.5558 -1.3202 23 6 2.0401 -0.7311 -1.2443 24 1 -0.3633 0.5059 0.8945 25 1 -0.3633 0.5216 -0.8854 26 1 -0.3632 -1.0277 -0.0090 27 1 3.1382 1.4333 -0.0091 28 1 1.6804 1.9580 -0.8855 29 1 1.6953 1.9528 0.8945 30 1 1.5315 -1.6889 1.3352 31 1 1.8443 -0.1266 2.1262 32 1 4.0695 -1.2132 2.0220 33 1 6.1324 -0.5935 0.5738 34 1 4.1670 -2.9547 -1.3084 35 1 5.1131 -4.7911 -2.6361 36 1 7.5484 -5.0936 -2.7952 37 1 9.0649 -3.5677 -1.6449 38 1 10.8481 -1.5065 -2.1868 39 1 3.7903 0.4783 -1.5751 40 1 3.9601 -1.2145 -2.0901 41 1 1.5774 -0.3064 -2.1352 42 1 1.7968 -1.7914 -1.1752 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210166626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:51 Heat of formation + Delta-G solvation = 18.626834 kcal Electronic energy + Delta-G solvation = -20898.921994 eV Core-core repulsion = 18035.711997 eV Total energy + Delta-G solvation = -2863.209997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.69049 -37.80632 -35.18227 -33.51944 -31.37758 -30.63319 -29.41350 -28.04332 -27.24931 -25.52327 -24.78265 -22.97180 -21.10830 -20.35360 -19.51468 -17.25316 -17.06671 -16.11561 -15.87530 -14.88555 -14.85658 -14.22589 -13.93814 -13.80760 -13.43312 -13.11047 -12.63899 -12.59830 -12.37031 -12.10412 -12.00765 -11.80875 -11.60163 -11.59554 -11.28988 -11.26286 -11.03285 -10.86872 -10.43056 -10.38781 -10.23593 -10.04134 -9.59521 -9.43607 -9.26790 -9.15485 -8.09780 -7.31550 -6.67968 -6.27378 -4.16721 2.61266 2.83784 3.10470 3.14455 3.23246 3.29525 3.98623 4.50410 4.74560 4.77363 4.89219 5.00615 5.37689 5.52958 5.55632 5.63079 5.73145 5.76016 5.84292 5.84613 5.92024 5.99578 6.05788 6.12739 6.18705 6.28549 6.30521 6.39054 6.41631 6.48925 6.57678 6.62767 6.88208 7.04618 7.22722 7.29489 7.41733 7.54926 7.75192 7.89248 8.19336 8.24472 8.49789 8.78088 8.82949 9.02643 9.12346 10.32065 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.005231 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.836236 B = 5351.447338 C = 6214.367690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.057 4.057 5 C -0.226 4.226 6 C 0.155 3.845 7 N -0.699 5.699 8 C 0.099 3.901 9 C -0.163 4.163 10 C -0.199 4.199 11 C -0.142 4.142 12 C -0.136 4.136 13 C 0.071 3.929 14 C -0.465 4.465 15 H 0.070 0.930 16 C 0.075 3.925 17 N -0.806 5.806 18 Si 0.905 3.095 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.277 1.277 22 C -0.103 4.103 23 C -0.102 4.102 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.400 0.600 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.276 0.724 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 3.827 2.849 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.095 4.095 5 C -0.248 4.248 6 C 0.059 3.941 7 N -0.327 5.327 8 C 0.002 3.998 9 C -0.185 4.185 10 C -0.219 4.219 11 C -0.162 4.162 12 C -0.157 4.157 13 C 0.067 3.933 14 C -0.497 4.497 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.433 5.433 18 Si 0.730 3.270 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.202 1.202 22 C -0.141 4.141 23 C -0.140 4.140 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.063 3.799 2.622 12.916 hybrid contribution 1.005 0.660 0.558 1.326 sum -11.058 4.459 3.180 12.340 Atomic orbital electron populations 1.21853 0.94922 1.01533 1.01362 1.20561 0.94720 0.95648 0.95775 1.21906 1.01984 0.95041 1.00906 1.20263 0.93049 0.99429 0.96773 1.22083 0.95266 1.09180 0.98282 1.18607 0.84783 0.96616 0.94080 1.41543 1.04111 1.34689 1.52382 1.17883 0.92501 0.90374 0.99025 1.20189 0.96743 0.97776 1.03805 1.20180 0.94519 1.01025 1.06206 1.20333 0.93447 1.00036 1.02335 1.20871 0.99335 0.94303 1.01145 1.17263 0.88646 0.93082 0.94300 1.19145 0.97118 1.23508 1.09898 0.91195 1.25742 0.98973 0.94853 0.94442 1.69835 1.20751 1.38364 1.14313 0.86323 0.80553 0.79281 0.80853 1.18735 1.19919 1.20225 1.20830 0.94514 1.02118 0.96676 1.21555 0.95170 1.00355 0.96917 0.92913 0.92863 0.92750 0.91809 0.93115 0.93171 0.91596 0.92141 0.88144 0.76310 0.88832 0.89645 0.89776 0.86255 0.91284 0.90933 0.89834 0.91999 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.48 37.16 0.32 -1.03 16 2 C -0.07 -0.78 0.78 -154.46 -0.12 -0.90 16 3 C -0.14 -1.63 7.82 37.16 0.29 -1.34 16 4 C -0.06 -0.72 4.88 -28.17 -0.14 -0.86 16 5 C -0.23 -3.56 9.23 -36.22 -0.33 -3.89 16 6 C 0.15 2.71 4.29 -81.34 -0.35 2.36 16 7 N -0.70 -14.56 5.15 -7.06 -0.04 -14.59 16 8 C 0.10 2.38 6.47 -83.29 -0.54 1.84 16 9 C -0.16 -3.71 8.07 -39.41 -0.32 -4.02 16 10 C -0.20 -4.55 10.03 -39.37 -0.40 -4.95 16 11 C -0.14 -3.41 9.96 -39.98 -0.40 -3.81 16 12 C -0.14 -3.57 8.61 -39.29 -0.34 -3.91 16 13 C 0.07 1.88 5.57 -106.63 -0.59 1.29 16 14 C -0.47 -12.10 8.52 -37.91 -0.32 -12.42 16 15 H 0.07 1.73 6.67 -52.49 -0.35 1.38 16 16 C 0.08 1.90 5.22 -17.33 -0.09 1.80 16 17 N -0.81 -21.05 10.86 55.55 0.60 -20.45 16 18 Si 0.90 18.90 29.58 -169.99 -5.03 13.87 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.10 -1.64 4.69 -28.18 -0.13 -1.78 16 23 C -0.10 -1.32 4.92 -26.69 -0.13 -1.45 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.84 5.66 -51.93 -0.29 0.55 16 28 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 32 H 0.10 1.65 8.05 -52.49 -0.42 1.23 16 33 H 0.40 8.29 7.08 -40.82 -0.29 8.00 16 34 H 0.09 1.95 5.97 -52.49 -0.31 1.64 16 35 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 3.25 6.19 -52.49 -0.32 2.92 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.07 1.13 6.90 -51.92 -0.36 0.78 16 40 H 0.08 1.51 5.91 -51.93 -0.31 1.21 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -26.89 324.51 -9.61 -36.49 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.44 Total: 12.86 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -3.60 Total: -33.07 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.57 Total: -35.04 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.89 -9.61 -36.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210166626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.118 kcal (2) G-P(sol) polarization free energy of solvation -26.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds