Wall clock time and date at job start Mon Mar 30 2020 01:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48496 * 109.47294 * 240.00277 * 3 2 1 5 5 H 1.48503 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47106 * 119.99976 * 3 2 1 7 7 C 1.39833 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00261 * 195.91796 * 7 2 1 9 9 C 1.41104 * 120.00073 * 15.91431 * 7 2 1 10 10 C 1.40907 * 120.14771 * 25.52604 * 9 7 2 11 11 C 1.36304 * 119.83834 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.15648 * 359.97004 * 11 10 9 13 13 N 1.38789 * 119.84317 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99672 * 186.32579 * 13 12 11 15 15 C 1.32758 * 120.96873 * 241.79034 * 14 13 12 16 16 C 1.50554 * 116.87710 * 180.02562 * 15 14 13 17 17 C 1.48893 * 113.34563 * 84.18819 * 16 15 14 18 18 C 1.51403 * 117.61087 * 280.30135 * 17 16 15 19 19 C 1.53865 * 110.51995 * 73.92899 * 18 17 16 20 20 C 1.54959 * 107.74180 * 253.95345 * 19 18 17 21 21 C 1.50798 * 120.96891 * 61.76838 * 14 13 12 22 22 C 1.39617 * 120.31037 * 0.29905 * 12 11 10 23 23 C 1.36313 * 120.15161 * 359.44765 * 22 12 11 24 24 H 0.97005 * 119.99917 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.08191 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.92074 * 180.02562 * 11 10 9 27 27 H 0.96997 * 119.99979 * 6.33054 * 13 12 11 28 28 H 1.08002 * 121.55887 * 359.72552 * 15 14 13 29 29 H 1.09004 * 108.77272 * 204.98140 * 16 15 14 30 30 H 1.08997 * 108.77807 * 323.15865 * 16 15 14 31 31 H 1.08998 * 107.89861 * 158.17827 * 17 16 15 32 32 H 1.09004 * 107.70271 * 42.26513 * 17 16 15 33 33 H 1.08995 * 109.26701 * 313.65759 * 18 17 16 34 34 H 1.09001 * 109.26499 * 194.19340 * 18 17 16 35 35 H 1.09004 * 109.80483 * 134.39952 * 19 18 17 36 36 H 1.08999 * 109.80825 * 13.51884 * 19 18 17 37 37 H 1.09000 * 109.61892 * 297.27015 * 20 19 18 38 38 H 1.08999 * 109.76528 * 176.81467 * 20 19 18 39 39 H 1.08999 * 109.54454 * 195.10925 * 21 14 13 40 40 H 1.09003 * 109.54746 * 315.30367 * 21 14 13 41 41 H 1.07993 * 119.92121 * 179.70086 * 22 12 11 42 42 H 1.07998 * 120.07738 * 180.26894 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0083 -1.2110 -0.0005 8 1 3.0572 -1.2291 0.2560 9 6 1.3433 -2.4094 -0.3361 10 6 0.2005 -2.3779 -1.1599 11 6 -0.4372 -3.5393 -1.4797 12 6 0.0397 -4.7582 -0.9936 13 7 -0.6144 -5.9369 -1.3238 14 6 -0.2248 -7.1341 -0.7391 15 6 0.2389 -8.1356 -1.4769 16 6 0.6343 -9.3920 -0.7477 17 6 -0.5109 -10.3063 -0.4841 18 6 -1.4140 -9.9803 0.6866 19 6 -2.3155 -8.7786 0.3540 20 6 -1.7775 -7.5539 1.1362 21 6 -0.3153 -7.3347 0.7527 22 6 1.1682 -4.7963 -0.1724 23 6 1.8188 -3.6430 0.1512 24 1 -0.4850 0.8401 0.0004 25 1 -0.1696 -1.4357 -1.5363 26 1 -1.3130 -3.5167 -2.1113 27 1 -1.3438 -5.9241 -1.9631 28 1 0.3239 -8.0546 -2.5506 29 1 1.3734 -9.9263 -1.3447 30 1 1.0881 -9.1170 0.2044 31 1 -0.1107 -11.3080 -0.3276 32 1 -1.1269 -10.3338 -1.3830 33 1 -0.8028 -9.7415 1.5568 34 1 -2.0371 -10.8458 0.9120 35 1 -3.3405 -8.9902 0.6588 36 1 -2.2820 -8.5768 -0.7167 37 1 -1.8503 -7.7430 2.2072 38 1 -2.3595 -6.6685 0.8805 39 1 0.2721 -8.2069 1.0397 40 1 0.0690 -6.4518 1.2635 41 1 1.5288 -5.7421 0.2040 42 1 2.6941 -3.6743 0.7830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210448774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:29 Heat of formation + Delta-G solvation = 26.124231 kcal Electronic energy + Delta-G solvation = -20581.095643 eV Core-core repulsion = 17718.210757 eV Total energy + Delta-G solvation = -2862.884885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.42326 -37.64061 -35.25638 -33.23007 -32.92454 -31.33949 -29.42035 -28.64332 -26.47286 -25.32668 -24.25563 -21.54092 -21.17644 -20.42798 -20.16914 -17.81901 -17.24425 -16.31483 -15.89899 -15.16635 -15.12008 -14.80603 -13.90695 -13.83528 -13.74338 -13.01970 -12.90732 -12.66336 -12.42967 -12.09946 -11.77687 -11.65193 -11.59871 -11.32425 -11.20465 -11.03199 -10.91858 -10.78319 -10.57440 -10.40146 -10.30485 -9.99148 -9.67371 -9.38821 -9.31032 -8.88802 -8.07780 -7.50288 -6.65801 -6.41485 -4.08660 2.45290 2.93413 3.09334 3.12907 3.16238 3.35718 4.03180 4.31221 4.72391 4.75696 4.86222 5.00620 5.21687 5.26109 5.39972 5.49780 5.65584 5.72452 5.79192 5.87181 5.91723 5.97186 6.11083 6.14830 6.22130 6.25121 6.27454 6.32080 6.35546 6.40375 6.52485 6.71788 6.94703 7.01369 7.18159 7.19501 7.33751 7.61212 7.66939 7.82744 8.12054 8.32026 8.53474 8.68735 8.75211 9.02665 9.11237 10.34622 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042003 B = 0.003776 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.458190 B = 7413.048738 C = 7536.539126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.127 4.127 11 C -0.155 4.155 12 C 0.077 3.923 13 N -0.703 5.703 14 C 0.158 3.842 15 C -0.229 4.229 16 C -0.076 4.076 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.193 4.193 24 H 0.277 0.723 25 H 0.121 0.879 26 H 0.087 0.913 27 H 0.391 0.609 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -14.459 -0.154 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.091 0.909 9 C 0.078 3.922 10 C -0.147 4.147 11 C -0.176 4.176 12 C -0.018 4.018 13 N -0.331 5.331 14 C 0.062 3.938 15 C -0.251 4.251 16 C -0.114 4.114 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.146 4.146 21 C -0.156 4.156 22 C -0.166 4.166 23 C -0.213 4.213 24 H 0.088 0.912 25 H 0.138 0.862 26 H 0.105 0.895 27 H 0.225 0.775 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.290 -14.313 -0.030 14.686 hybrid contribution -0.031 0.855 -0.267 0.896 sum -3.321 -13.458 -0.297 13.865 Atomic orbital electron populations 1.69841 1.07344 1.28769 1.37506 1.25805 0.94707 1.00936 0.92673 0.86424 0.80082 0.80694 0.79768 1.19054 1.20544 1.19229 1.19366 0.97226 0.91159 1.41898 0.90903 1.17520 0.92277 0.92026 0.90377 1.20930 0.98164 0.96281 0.99302 1.20069 1.00881 0.91878 1.04804 1.17327 0.95766 0.84650 1.04075 1.41231 1.39349 1.03579 1.48954 1.19355 0.95250 0.86283 0.92958 1.23033 1.06154 0.96729 0.99169 1.19699 0.97293 0.94349 1.00046 1.20436 0.97318 0.98599 0.98677 1.21479 0.97776 0.97811 0.98367 1.22201 0.97979 0.94798 1.00869 1.21791 0.95821 0.97948 0.99049 1.21338 0.97267 1.02992 0.94041 1.19969 0.96779 0.97221 1.02678 1.20584 1.02551 0.92800 1.05362 0.91211 0.86174 0.89484 0.77456 0.87327 0.92222 0.91342 0.93080 0.92737 0.91810 0.92503 0.92655 0.91494 0.92153 0.91930 0.89724 0.90489 0.88992 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.34 10.90 55.54 0.61 -20.73 16 2 C 0.07 1.90 5.17 -17.35 -0.09 1.81 16 3 Si 0.91 19.18 29.59 -169.99 -5.03 14.15 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.47 -12.62 9.04 -37.90 -0.34 -12.96 16 8 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 9 C 0.08 2.18 5.57 -106.79 -0.59 1.59 16 10 C -0.13 -3.31 8.62 -39.27 -0.34 -3.65 16 11 C -0.15 -3.60 9.82 -39.76 -0.39 -4.00 16 12 C 0.08 1.68 6.56 -83.68 -0.55 1.13 16 13 N -0.70 -12.48 5.40 -6.67 -0.04 -12.51 16 14 C 0.16 2.45 3.29 -81.25 -0.27 2.18 16 15 C -0.23 -3.21 9.23 -36.25 -0.33 -3.54 16 16 C -0.08 -0.88 5.08 -29.97 -0.15 -1.03 16 17 C -0.11 -1.14 4.89 -29.55 -0.14 -1.28 16 18 C -0.12 -1.16 5.42 -27.09 -0.15 -1.31 16 19 C -0.12 -1.36 5.70 -25.25 -0.14 -1.50 16 20 C -0.11 -1.41 5.60 -25.83 -0.14 -1.56 16 21 C -0.12 -1.71 4.79 -27.97 -0.13 -1.85 16 22 C -0.14 -3.28 8.22 -39.76 -0.33 -3.61 16 23 C -0.19 -4.79 9.74 -39.27 -0.38 -5.18 16 24 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 25 H 0.12 3.25 6.15 -52.48 -0.32 2.93 16 26 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.39 6.30 8.82 -40.82 -0.36 5.94 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.80 5.66 -51.93 -0.29 0.51 16 31 H 0.05 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 33 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.82 6.28 -51.93 -0.33 0.49 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.09 3.59 -51.93 -0.19 0.90 16 40 H 0.08 1.31 6.20 -51.93 -0.32 0.99 16 41 H 0.09 1.91 5.89 -52.49 -0.31 1.60 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -27.25 320.01 -10.34 -37.58 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.21 Total: 11.44 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -4.48 Total: -34.75 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.57 Total: -33.24 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.25 -10.34 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210448774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.708 kcal (2) G-P(sol) polarization free energy of solvation -27.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds