Wall clock time and date at job start Mon Mar 30 2020 01:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86800 * 120.00256 * 2 1 4 4 H 1.48496 * 109.47294 * 240.00277 * 3 2 1 5 5 H 1.48503 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47106 * 119.99976 * 3 2 1 7 7 C 1.39833 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00261 * 195.91796 * 7 2 1 9 9 C 1.41104 * 120.00073 * 15.91431 * 7 2 1 10 10 C 1.40907 * 120.14771 * 25.52604 * 9 7 2 11 11 C 1.36304 * 119.83834 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.15648 * 359.97004 * 11 10 9 13 13 N 1.38789 * 119.84317 * 180.02562 * 12 11 10 14 14 C 1.38814 * 119.99672 * 186.32579 * 13 12 11 15 15 C 1.32758 * 120.96873 * 241.79034 * 14 13 12 16 16 C 1.50554 * 116.87710 * 180.02562 * 15 14 13 17 17 C 1.48893 * 113.34563 * 84.18819 * 16 15 14 18 18 C 1.51403 * 117.61087 * 280.30135 * 17 16 15 19 19 C 1.53865 * 110.51995 * 73.92899 * 18 17 16 20 20 C 1.54959 * 107.74180 * 253.95345 * 19 18 17 21 21 C 1.50798 * 120.96891 * 61.76838 * 14 13 12 22 22 C 1.39617 * 120.31037 * 0.29905 * 12 11 10 23 23 C 1.36313 * 120.15161 * 359.44765 * 22 12 11 24 24 H 0.97005 * 119.99917 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.08191 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.92074 * 180.02562 * 11 10 9 27 27 H 0.96997 * 119.99979 * 6.33054 * 13 12 11 28 28 H 1.08002 * 121.55887 * 359.72552 * 15 14 13 29 29 H 1.09004 * 108.77272 * 204.98140 * 16 15 14 30 30 H 1.08997 * 108.77807 * 323.15865 * 16 15 14 31 31 H 1.08998 * 107.89861 * 158.17827 * 17 16 15 32 32 H 1.09004 * 107.70271 * 42.26513 * 17 16 15 33 33 H 1.08995 * 109.26701 * 313.65759 * 18 17 16 34 34 H 1.09001 * 109.26499 * 194.19340 * 18 17 16 35 35 H 1.09004 * 109.80483 * 134.39952 * 19 18 17 36 36 H 1.08999 * 109.80825 * 13.51884 * 19 18 17 37 37 H 1.09000 * 109.61892 * 297.27015 * 20 19 18 38 38 H 1.08999 * 109.76528 * 176.81467 * 20 19 18 39 39 H 1.08999 * 109.54454 * 195.10925 * 21 14 13 40 40 H 1.09003 * 109.54746 * 315.30367 * 21 14 13 41 41 H 1.07993 * 119.92121 * 179.70086 * 22 12 11 42 42 H 1.07998 * 120.07738 * 180.26894 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2782 2.7465 0.0006 6 1 3.0969 1.6963 1.2125 7 6 2.0083 -1.2110 -0.0005 8 1 3.0572 -1.2291 0.2560 9 6 1.3433 -2.4094 -0.3361 10 6 0.2005 -2.3779 -1.1599 11 6 -0.4372 -3.5393 -1.4797 12 6 0.0397 -4.7582 -0.9936 13 7 -0.6144 -5.9369 -1.3238 14 6 -0.2248 -7.1341 -0.7391 15 6 0.2389 -8.1356 -1.4769 16 6 0.6343 -9.3920 -0.7477 17 6 -0.5109 -10.3063 -0.4841 18 6 -1.4140 -9.9803 0.6866 19 6 -2.3155 -8.7786 0.3540 20 6 -1.7775 -7.5539 1.1362 21 6 -0.3153 -7.3347 0.7527 22 6 1.1682 -4.7963 -0.1724 23 6 1.8188 -3.6430 0.1512 24 1 -0.4850 0.8401 0.0004 25 1 -0.1696 -1.4357 -1.5363 26 1 -1.3130 -3.5167 -2.1113 27 1 -1.3438 -5.9241 -1.9631 28 1 0.3239 -8.0546 -2.5506 29 1 1.3734 -9.9263 -1.3447 30 1 1.0881 -9.1170 0.2044 31 1 -0.1107 -11.3080 -0.3276 32 1 -1.1269 -10.3338 -1.3830 33 1 -0.8028 -9.7415 1.5568 34 1 -2.0371 -10.8458 0.9120 35 1 -3.3405 -8.9902 0.6588 36 1 -2.2820 -8.5768 -0.7167 37 1 -1.8503 -7.7430 2.2072 38 1 -2.3595 -6.6685 0.8805 39 1 0.2721 -8.2069 1.0397 40 1 0.0690 -6.4518 1.2635 41 1 1.5288 -5.7421 0.2040 42 1 2.6941 -3.6743 0.7830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210448774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:28 Heat of formation + Delta-G solvation = 14.119453 kcal Electronic energy + Delta-G solvation = -20581.616209 eV Core-core repulsion = 17718.210757 eV Total energy + Delta-G solvation = -2863.405452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69582 -39.23479 -36.75129 -34.95410 -33.92870 -32.71808 -31.25817 -30.38285 -27.69701 -26.52785 -25.84106 -23.05480 -22.68827 -21.85696 -21.32939 -19.21153 -19.02942 -17.80494 -17.32060 -16.89511 -16.18384 -15.97996 -15.62090 -14.94947 -14.75663 -14.52028 -14.46328 -14.06554 -13.93764 -13.67493 -13.35732 -13.26685 -12.79367 -12.76185 -12.68693 -12.39174 -12.25038 -12.18503 -11.83713 -11.59543 -11.34141 -11.29577 -11.19849 -11.03727 -10.91451 -10.56201 -9.51297 -9.36209 -8.55295 -8.15631 -6.05814 1.00328 1.15097 1.35208 1.40221 1.51070 1.63233 2.26469 2.82971 2.91472 3.80606 3.84552 4.00095 4.12620 4.19293 4.24237 4.40116 4.45580 4.49718 4.54208 4.69555 4.77263 4.90988 4.92874 4.96951 5.02383 5.15605 5.16416 5.26775 5.28961 5.32712 5.35575 5.37550 5.41534 5.44902 5.59836 5.65629 5.71137 5.84791 5.94380 6.02854 6.15769 6.39762 6.68494 6.91233 7.05677 7.19862 7.24085 8.46364 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.042003 B = 0.003776 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.458190 B = 7413.048738 C = 7536.539126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.032 3.968 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.505 4.505 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.145 4.145 11 C -0.166 4.166 12 C 0.101 3.899 13 N -0.697 5.697 14 C 0.125 3.875 15 C -0.203 4.203 16 C -0.078 4.078 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.150 4.150 23 C -0.202 4.202 24 H 0.283 0.717 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.399 0.601 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -16.772 -0.217 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.536 4.536 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.165 4.165 11 C -0.188 4.188 12 C 0.004 3.996 13 N -0.325 5.325 14 C 0.030 3.970 15 C -0.225 4.225 16 C -0.115 4.115 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.145 4.145 21 C -0.151 4.151 22 C -0.172 4.172 23 C -0.222 4.222 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.235 0.765 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.065 0.935 41 H 0.130 0.870 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.345 -16.687 -0.099 17.019 hybrid contribution -0.073 1.303 -0.300 1.339 sum -3.418 -15.383 -0.399 15.763 Atomic orbital electron populations 1.69908 1.08728 1.29908 1.38337 1.26621 0.95502 1.04118 0.91747 0.85314 0.78726 0.76153 0.79822 1.18714 1.19406 1.18627 1.19599 0.97352 0.92510 1.44170 0.91299 1.17828 0.93405 0.92980 0.91751 1.20869 0.98801 0.96620 1.00187 1.20261 1.01504 0.91705 1.05348 1.17408 0.94847 0.85691 1.01699 1.41182 1.39172 1.03105 1.49069 1.19552 0.97786 0.85914 0.93731 1.23332 1.02829 0.97084 0.99267 1.19784 0.98360 0.93460 0.99939 1.20392 0.96701 0.99082 0.98653 1.21488 0.97763 0.97719 0.98323 1.22157 0.98916 0.94442 0.99807 1.21781 0.94631 0.98000 1.00069 1.21313 0.98412 1.02433 0.92942 1.20145 0.96900 0.97333 1.02787 1.20770 1.02951 0.93071 1.05443 0.90680 0.87951 0.87413 0.76505 0.87361 0.90776 0.91237 0.91064 0.92883 0.91672 0.90748 0.91603 0.92539 0.91057 0.94279 0.87745 0.93451 0.86963 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.99 10.90 21.81 0.24 -45.76 16 2 C 0.03 1.70 5.17 85.22 0.44 2.14 16 3 Si 0.98 40.15 29.59 68.60 2.03 42.18 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.51 -28.57 9.04 23.36 0.21 -28.36 16 8 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 9 C 0.04 2.42 5.57 -21.27 -0.12 2.31 16 10 C -0.14 -7.86 8.62 22.47 0.19 -7.67 16 11 C -0.17 -7.86 9.82 22.15 0.22 -7.64 16 12 C 0.10 4.38 6.56 38.71 0.25 4.63 16 13 N -0.70 -23.96 5.40 -175.03 -0.95 -24.91 16 14 C 0.12 3.66 3.29 40.31 0.13 3.79 16 15 C -0.20 -5.15 9.23 24.46 0.23 -4.93 16 16 C -0.08 -1.51 5.08 28.50 0.14 -1.36 16 17 C -0.11 -1.79 4.89 28.77 0.14 -1.65 16 18 C -0.12 -1.88 5.42 30.36 0.16 -1.71 16 19 C -0.12 -2.30 5.70 31.56 0.18 -2.12 16 20 C -0.11 -2.63 5.60 31.18 0.17 -2.46 16 21 C -0.11 -3.10 4.79 29.79 0.14 -2.96 16 22 C -0.15 -6.80 8.22 22.15 0.18 -6.62 16 23 C -0.20 -10.34 9.74 22.47 0.22 -10.12 16 24 H 0.28 14.11 8.30 -92.70 -0.77 13.34 16 25 H 0.10 5.84 6.15 -2.91 -0.02 5.82 16 26 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 27 H 0.40 12.34 8.82 -92.71 -0.82 11.52 16 28 H 0.11 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.07 1.38 5.66 -2.39 -0.01 1.37 16 31 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.05 0.90 7.70 -2.39 -0.02 0.88 16 33 H 0.06 1.06 6.56 -2.39 -0.02 1.05 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.06 1.25 6.28 -2.39 -0.02 1.23 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 2.42 3.59 -2.39 -0.01 2.42 16 40 H 0.05 1.58 6.20 -2.39 -0.01 1.57 16 41 H 0.11 4.57 5.89 -2.91 -0.02 4.56 16 42 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -60.61 320.01 4.43 -56.18 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.20 Total: 37.03 kcal Atomic # 6 Polarization: -67.64 SS G_CDS: 2.91 Total: -64.74 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -0.71 Total: -70.66 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -60.61 4.43 -56.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210448774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.304 kcal (2) G-P(sol) polarization free energy of solvation -60.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds