Wall clock time and date at job start Mon Mar 30 2020 01:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99962 * 2 1 4 4 H 1.48499 * 109.47513 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47105 * 299.99849 * 3 2 1 6 6 H 1.48503 * 109.47299 * 59.99501 * 3 2 1 7 7 C 1.39927 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99641 * 195.87453 * 7 2 1 9 9 C 1.41407 * 119.99868 * 15.86127 * 7 2 1 10 10 C 1.40787 * 120.20952 * 25.14729 * 9 7 2 11 11 C 1.37654 * 119.89907 * 180.02562 * 10 9 7 12 12 C 1.38512 * 120.32714 * 359.74139 * 11 10 9 13 13 C 1.39316 * 120.41990 * 0.51699 * 12 11 10 14 14 N 1.39719 * 119.94991 * 179.75956 * 13 12 11 15 15 C 1.38955 * 120.00169 * 349.46962 * 14 13 12 16 16 C 1.32673 * 121.55567 * 120.38946 * 15 14 13 17 17 C 1.51174 * 118.12588 * 179.79696 * 16 15 14 18 18 C 1.52693 * 108.79626 * 255.30609 * 17 16 15 19 19 C 1.54968 * 108.74202 * 57.76087 * 18 17 16 20 20 C 1.53865 * 107.74223 * 56.90716 * 19 18 17 21 21 C 1.51398 * 110.52499 * 253.97410 * 20 19 18 22 22 C 1.49475 * 117.60012 * 74.01820 * 21 20 19 23 23 C 1.38339 * 120.09546 * 359.48807 * 13 12 11 24 24 H 0.96998 * 120.00535 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.04843 * 0.04106 * 10 9 7 26 26 H 1.07998 * 119.83520 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.78955 * 180.27501 * 12 11 10 28 28 H 0.97008 * 119.99833 * 169.47108 * 14 13 12 29 29 H 1.07997 * 120.97046 * 359.72652 * 16 15 14 30 30 H 1.09006 * 109.79407 * 135.43106 * 17 16 15 31 31 H 1.09001 * 109.50788 * 15.01481 * 17 16 15 32 32 H 1.08992 * 109.61729 * 297.93803 * 18 17 16 33 33 H 1.08995 * 109.61695 * 177.58200 * 18 17 16 34 34 H 1.08996 * 109.80119 * 176.46512 * 19 18 17 35 35 H 1.08996 * 109.80350 * 297.28554 * 19 18 17 36 36 H 1.09005 * 109.26975 * 14.24236 * 20 19 18 37 37 H 1.08996 * 109.26673 * 133.73749 * 20 19 18 38 38 H 1.08999 * 107.81816 * 196.08007 * 21 20 19 39 39 H 1.09000 * 107.81532 * 311.96696 * 21 20 19 40 40 H 1.08998 * 108.78148 * 41.13638 * 22 21 20 41 41 H 1.09004 * 108.77748 * 159.43140 * 22 21 20 42 42 H 1.07999 * 120.16830 * 180.27971 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0571 -1.2296 0.2553 9 6 1.3413 -2.4130 -0.3358 10 6 0.1941 -2.3826 -1.1513 11 6 -0.4502 -3.5557 -1.4732 12 6 0.0276 -4.7678 -1.0031 13 6 1.1586 -4.8130 -0.1908 14 7 1.6291 -6.0407 0.2820 15 6 0.8570 -7.1859 0.1300 16 6 1.2995 -8.2366 -0.5487 17 6 0.3966 -9.4438 -0.6616 18 6 0.9124 -10.5333 0.2757 19 6 0.9519 -9.9707 1.7191 20 6 -0.4652 -9.4866 2.0726 21 6 -0.5284 -7.9740 2.0587 22 6 -0.5204 -7.2928 0.7283 23 6 1.8196 -3.6447 0.1436 24 1 -0.4851 0.8400 -0.0004 25 1 -0.1798 -1.4404 -1.5239 26 1 -1.3299 -3.5312 -2.0992 27 1 -0.4821 -5.6833 -1.2647 28 1 2.4949 -6.0935 0.7164 29 1 2.2765 -8.2297 -1.0088 30 1 0.4005 -9.8131 -1.6872 31 1 -0.6183 -9.1673 -0.3759 32 1 1.9154 -10.8325 -0.0280 33 1 0.2460 -11.3949 0.2369 34 1 1.2583 -10.7539 2.4124 35 1 1.6518 -9.1367 1.7713 36 1 -1.1728 -9.8828 1.3443 37 1 -0.7314 -9.8481 3.0659 38 1 -1.4359 -7.6733 2.5821 39 1 0.3208 -7.5995 2.6303 40 1 -1.1577 -7.8523 0.0436 41 1 -0.9288 -6.2890 0.8456 42 1 2.6991 -3.6788 0.7695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210449767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:18 Heat of formation + Delta-G solvation = 21.176027 kcal Electronic energy + Delta-G solvation = -20496.724501 eV Core-core repulsion = 17633.625045 eV Total energy + Delta-G solvation = -2863.099456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 271.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.34720 -37.55923 -35.26254 -33.31239 -32.78532 -31.49255 -29.73907 -27.97113 -25.99154 -25.32920 -24.93811 -21.69506 -21.06171 -20.64296 -19.87818 -17.97386 -17.22122 -16.31145 -15.45149 -15.18067 -14.97952 -14.75874 -14.38994 -14.03841 -13.55589 -13.06492 -12.96826 -12.80325 -12.30614 -12.10033 -11.78687 -11.75269 -11.50253 -11.36854 -11.19128 -11.09090 -10.81115 -10.69877 -10.48874 -10.38667 -10.28853 -10.03852 -9.79733 -9.38338 -9.31468 -9.00359 -8.13629 -7.39790 -6.70911 -6.27362 -4.32517 2.44119 2.83676 3.09937 3.15498 3.20694 3.35796 3.96571 4.21065 4.70138 4.75514 4.84442 5.00047 5.14894 5.27451 5.34975 5.50626 5.68770 5.73574 5.78837 5.82405 5.87588 5.93589 6.00424 6.12187 6.22175 6.25081 6.30207 6.35692 6.37715 6.52460 6.55968 6.75729 6.99229 7.05456 7.10556 7.22775 7.34018 7.39903 7.83268 7.91906 8.12986 8.24209 8.48467 8.64177 8.76751 8.97945 9.08207 10.25047 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.039142 B = 0.003732 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.177536 B = 7499.950860 C = 7544.367181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.137 3.863 10 C -0.191 4.191 11 C -0.080 4.080 12 C -0.285 4.285 13 C 0.212 3.788 14 N -0.706 5.706 15 C 0.148 3.852 16 C -0.218 4.218 17 C -0.089 4.089 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.101 4.101 23 C -0.280 4.280 24 H 0.278 0.722 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.394 0.606 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 -14.504 1.804 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.134 3.866 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.308 4.308 13 C 0.116 3.884 14 N -0.333 5.333 15 C 0.053 3.947 16 C -0.240 4.240 17 C -0.127 4.127 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.303 4.303 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.229 0.771 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.948 -14.353 1.787 14.494 hybrid contribution 0.744 0.825 0.266 1.142 sum -0.203 -13.528 2.053 13.684 Atomic orbital electron populations 1.69851 1.07503 1.28858 1.35761 1.25885 0.94715 1.01176 0.92297 0.86297 0.80968 0.81144 0.78484 1.18485 1.19757 1.20070 1.19583 0.97348 0.91023 1.41416 0.90613 1.17349 0.90618 0.91278 0.87318 1.21248 0.99890 0.96713 1.03295 1.20475 0.97864 0.92893 0.98645 1.19962 1.02553 0.96717 1.11552 1.17474 0.94092 0.83522 0.93307 1.41800 1.20773 1.04473 1.66260 1.19202 0.92975 0.86976 0.95579 1.23081 1.01500 0.96916 1.02498 1.20858 0.99228 0.93711 0.98887 1.21873 1.00760 0.97340 0.95080 1.22192 0.97209 1.00446 0.96045 1.21486 0.97263 0.95584 1.01010 1.20455 1.02073 0.94888 0.97326 1.20293 0.95336 1.01901 0.96424 1.20481 1.06164 0.91560 1.12097 0.91088 0.86532 0.89522 0.89279 0.77054 0.87638 0.92055 0.90223 0.92443 0.92384 0.92682 0.91349 0.91861 0.92401 0.92618 0.92618 0.90616 0.90437 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.82 10.88 55.55 0.60 -20.22 16 2 C 0.08 1.95 5.18 -17.35 -0.09 1.86 16 3 Si 0.91 18.89 29.59 -169.99 -5.03 13.86 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.51 9.06 -37.74 -0.34 -12.85 16 8 H 0.08 1.97 7.89 -52.48 -0.41 1.56 16 9 C 0.14 3.73 5.57 -106.85 -0.60 3.13 16 10 C -0.19 -5.08 8.69 -38.83 -0.34 -5.42 16 11 C -0.08 -1.92 10.01 -39.69 -0.40 -2.32 16 12 C -0.29 -6.53 8.35 -39.08 -0.33 -6.86 16 13 C 0.21 4.79 6.39 -83.83 -0.54 4.25 16 14 N -0.71 -13.00 5.46 -6.89 -0.04 -13.04 16 15 C 0.15 2.36 3.99 -81.32 -0.32 2.03 16 16 C -0.22 -3.08 8.49 -35.97 -0.31 -3.38 16 17 C -0.09 -1.03 5.45 -27.81 -0.15 -1.18 16 18 C -0.11 -1.12 5.59 -25.85 -0.14 -1.27 16 19 C -0.12 -1.26 5.70 -25.24 -0.14 -1.41 16 20 C -0.12 -1.20 5.42 -27.09 -0.15 -1.35 16 21 C -0.11 -1.38 4.90 -29.28 -0.14 -1.52 16 22 C -0.10 -1.49 4.25 -29.70 -0.13 -1.61 16 23 C -0.28 -6.96 9.64 -38.67 -0.37 -7.33 16 24 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 25 H 0.12 3.20 6.13 -52.49 -0.32 2.87 16 26 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.09 1.89 6.38 -52.49 -0.33 1.55 16 28 H 0.39 6.62 8.84 -40.82 -0.36 6.26 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.92 3.59 -51.93 -0.19 0.73 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 36 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.76 7.71 -51.93 -0.40 0.36 16 40 H 0.08 1.02 5.65 -51.93 -0.29 0.73 16 41 H 0.08 1.36 6.89 -51.93 -0.36 1.00 16 42 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -27.51 321.17 -10.38 -37.89 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.28 Total: 11.89 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -4.48 Total: -35.22 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.57 Total: -33.25 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.51 -10.38 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210449767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.063 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds